Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35444 * 126.77805 * 2 1 4 4 C 1.41380 * 103.98540 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.80360 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47325 * 94.99762 * 5 4 3 7 7 C 1.46897 * 111.00421 * 180.02562 * 6 5 4 8 8 H 1.09007 * 110.77955 * 323.21826 * 7 6 5 9 9 C 1.55153 * 110.72111 * 86.45283 * 7 6 5 10 10 C 1.54912 * 101.58230 * 153.86794 * 9 7 6 11 11 N 1.47421 * 104.83107 * 322.99299 * 10 9 7 12 12 C 1.34775 * 125.64649 * 204.09463 * 11 10 9 13 13 O 1.21284 * 120.00295 * 180.02562 * 12 11 10 14 14 C 1.50708 * 119.99957 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47016 * 299.99635 * 20 18 16 23 23 H 1.48495 * 109.47483 * 59.99992 * 20 18 16 24 24 C 1.47014 * 108.70511 * 24.35609 * 11 10 9 25 25 H 1.09005 * 109.88315 * 239.29631 * 24 11 10 26 26 C 1.52998 * 109.88541 * 118.12953 * 24 11 10 27 27 N 1.30178 * 106.39310 * 0.25898 * 4 3 2 28 28 O 1.20920 * 111.60440 * 359.53732 * 27 4 3 29 29 H 1.09000 * 109.46476 * 90.00293 * 1 2 3 30 30 H 1.08990 * 109.47425 * 210.00115 * 1 2 3 31 31 H 1.09001 * 109.47172 * 330.00631 * 1 2 3 32 32 H 1.08003 * 128.01125 * 359.94353 * 3 2 1 33 33 H 1.09003 * 109.47155 * 335.00034 * 5 4 3 34 34 H 1.08998 * 109.47614 * 214.99765 * 5 4 3 35 35 H 1.00905 * 111.00120 * 56.04690 * 6 5 4 36 36 H 1.08994 * 111.00496 * 35.79389 * 9 7 6 37 37 H 1.09003 * 111.03753 * 271.95636 * 9 7 6 38 38 H 1.09002 * 110.36666 * 204.15234 * 10 9 7 39 39 H 1.09001 * 110.46061 * 81.87930 * 10 9 7 40 40 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 41 41 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 42 42 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 43 43 H 1.09001 * 109.46601 * 61.45393 * 26 24 11 44 44 H 1.09000 * 109.47226 * 181.45101 * 26 24 11 45 45 H 1.08994 * 109.47222 * 301.45625 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 0.0006 5 6 4.9211 1.2998 0.0014 6 7 5.4038 1.4434 1.3814 7 6 6.6717 2.1841 1.4213 8 1 7.2966 1.9276 0.5658 9 6 6.4129 3.7131 1.4730 10 6 7.6972 4.2224 2.1737 11 7 8.0164 3.1882 3.1746 12 6 8.7366 3.3779 4.2979 13 8 8.9385 2.4504 5.0528 14 6 9.2911 4.7427 4.6159 15 16 10.2041 4.6741 6.1772 16 6 10.7255 6.3527 6.3008 17 1 10.4546 7.0602 5.5312 18 6 11.4843 6.7655 7.3872 19 7 11.8148 5.9029 8.3250 20 14 12.0363 8.5452 7.5186 21 1 12.8281 8.7274 8.7616 22 1 12.8751 8.8913 6.3429 23 1 10.8455 9.4315 7.5552 24 6 7.4245 1.9141 2.7413 25 1 6.7264 1.5537 3.4969 26 6 8.5277 0.8791 2.5120 27 7 3.4763 -0.7565 -0.0047 28 8 2.3094 -1.0737 0.0006 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 2.0346 2.1270 -0.0008 33 1 4.7634 2.2871 -0.4328 34 1 5.6609 0.7578 -0.5877 35 1 5.4965 0.5431 1.8276 36 1 5.5276 3.9396 2.0672 37 1 6.3242 4.1291 0.4694 38 1 7.5089 5.1782 2.6627 39 1 8.5108 4.3187 1.4549 40 1 8.4716 5.4560 4.7049 41 1 9.9619 5.0576 3.8167 42 1 11.5278 4.9788 8.2570 43 1 9.0612 0.7038 3.4462 44 1 8.0838 -0.0546 2.1664 45 1 9.2239 1.2506 1.7602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700811291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = 23.811499 kcal Electronic energy + Delta-G solvation = -26185.870728 eV Core-core repulsion = 22332.746357 eV Total energy + Delta-G solvation = -3853.124371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.30594 -40.23778 -37.95435 -36.06151 -34.19886 -33.46583 -32.52605 -31.77318 -30.85826 -28.69797 -28.25162 -26.92528 -24.86478 -24.59253 -23.45726 -22.85885 -20.92084 -20.45890 -19.06637 -18.18204 -18.01234 -17.64602 -16.94850 -16.46616 -16.02439 -15.29992 -15.07691 -14.98414 -14.26596 -14.20444 -14.08066 -13.92685 -13.83345 -13.75317 -13.58857 -13.12713 -12.98843 -12.83012 -12.68598 -12.48346 -12.36938 -12.06453 -11.83385 -11.79412 -11.57140 -11.53938 -11.25242 -10.92667 -10.90264 -10.56832 -10.17423 -9.72974 -9.57325 -9.45081 -9.01301 -8.97895 -8.58172 -8.21875 -6.67005 -6.61962 -3.99803 1.06545 1.77544 2.69873 2.75710 2.97819 3.31614 3.37836 3.42465 3.57661 3.62950 3.91291 4.00341 4.12727 4.25900 4.35616 4.58190 4.69511 4.77548 4.78887 4.87348 4.91833 4.99955 5.03603 5.07389 5.17674 5.22555 5.23230 5.24785 5.32911 5.41463 5.43526 5.48492 5.53335 5.62154 5.64081 5.77377 5.86900 5.92815 6.01543 6.16131 6.41663 6.52993 6.80007 7.60404 7.87313 7.91794 8.47672 8.50231 9.27343 10.81919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001816 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.926103 B =15417.191158 C =15699.124803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.035 4.035 3 C -0.218 4.218 4 C 0.023 3.977 5 C 0.140 3.860 6 N -0.671 5.671 7 C 0.078 3.922 8 H 0.065 0.935 9 C -0.121 4.121 10 C 0.099 3.901 11 N -0.619 5.619 12 C 0.549 3.451 13 O -0.514 6.514 14 C -0.124 4.124 15 S -0.116 6.116 16 C -0.607 4.607 17 H 0.065 0.935 18 C 0.035 3.965 19 N -0.883 5.883 20 Si 1.084 2.916 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.139 3.861 25 H 0.082 0.918 26 C -0.166 4.166 27 N -0.363 5.363 28 O 0.100 5.900 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.348 0.652 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.278 0.722 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.796 -8.449 -23.031 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.239 4.239 4 C -0.136 4.136 5 C 0.010 3.990 6 N -0.305 5.305 7 C -0.032 4.032 8 H 0.083 0.917 9 C -0.160 4.160 10 C -0.024 4.024 11 N -0.356 5.356 12 C 0.337 3.663 13 O -0.388 6.388 14 C -0.275 4.275 15 S 0.110 5.890 16 C -0.755 4.755 17 H 0.084 0.916 18 C -0.175 4.175 19 N -0.518 5.518 20 Si 0.910 3.090 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.034 3.966 25 H 0.100 0.900 26 C -0.224 4.224 27 N -0.067 5.067 28 O 0.032 5.968 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.107 -9.260 -20.745 30.338 hybrid contribution -0.858 0.354 -2.356 2.532 sum -20.965 -8.906 -23.101 32.442 Atomic orbital electron populations 1.20347 0.83952 1.04819 1.04085 1.24535 0.96453 0.86135 1.02753 1.22394 0.91132 1.01042 1.09374 1.23394 0.97341 0.89835 1.03068 1.20201 0.89460 0.98795 0.90522 1.60504 1.29227 1.24784 1.15946 1.22640 0.88953 0.94874 0.96768 0.91688 1.22848 0.98148 0.93733 1.01255 1.22325 0.96581 0.92475 0.91049 1.48447 1.54601 1.10028 1.22560 1.19979 0.76908 0.90548 0.78863 1.90696 1.57203 1.43578 1.47348 1.23293 1.03347 0.95884 1.04975 1.84822 1.66111 1.16303 1.21726 1.23693 1.43348 0.94049 1.14445 0.91632 1.26055 0.93447 1.06681 0.91342 1.70800 1.42079 1.05614 1.33272 0.83332 0.76489 0.72640 0.76547 1.20265 1.21149 1.21127 1.21485 0.94661 0.85302 0.95103 0.89974 1.22187 0.98889 0.97783 1.03529 1.73855 0.97151 1.16404 1.19242 1.84819 1.11243 1.33258 1.67443 0.89415 0.89773 0.88922 0.81089 0.88443 0.93108 0.83223 0.89314 0.90117 0.90025 0.91379 0.89043 0.89088 0.90990 0.90406 0.92211 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.18 16 2 C -0.04 -0.24 7.49 -35.30 -0.26 -0.50 16 3 C -0.22 -1.54 11.06 -39.38 -0.44 -1.98 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.14 1.04 6.13 -4.98 -0.03 1.01 16 6 N -0.67 -5.79 6.29 -106.05 -0.67 -6.45 16 7 C 0.08 0.69 2.77 -65.88 -0.18 0.51 16 8 H 0.07 0.53 7.60 -51.93 -0.39 0.13 16 9 C -0.12 -1.00 6.71 -24.58 -0.17 -1.17 16 10 C 0.10 1.05 6.69 -2.53 -0.02 1.04 16 11 N -0.62 -8.99 3.06 -163.01 -0.50 -9.49 16 12 C 0.55 10.67 7.66 -10.98 -0.08 10.59 16 13 O -0.51 -11.89 14.91 5.55 0.08 -11.81 16 14 C -0.12 -2.58 5.16 36.01 0.19 -2.39 16 15 S -0.12 -3.17 19.60 -107.50 -2.11 -5.28 16 16 C -0.61 -17.63 9.50 30.94 0.29 -17.34 16 17 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 18 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 19 N -0.88 -27.68 13.67 55.49 0.76 -26.92 16 20 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 C 0.14 1.71 2.99 -66.95 -0.20 1.51 16 25 H 0.08 1.14 7.97 -51.93 -0.41 0.72 16 26 C -0.17 -2.05 9.11 37.16 0.34 -1.71 16 27 N -0.36 -3.82 12.07 33.42 0.40 -3.42 16 28 O 0.10 0.93 11.20 17.18 0.19 1.12 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.10 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.35 3.25 8.44 -39.29 -0.33 2.92 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.78 7.85 -51.91 -0.41 1.37 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 43 H 0.08 1.22 6.89 -51.93 -0.36 0.86 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.36 388.79 -8.76 -45.12 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.86 Total: 1.01 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.84 Total: -9.68 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.01 Total: -46.29 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.36 -8.76 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.934 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds