Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35444 * 126.77805 * 2 1 4 4 C 1.41380 * 103.98540 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.80360 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47325 * 94.99762 * 5 4 3 7 7 C 1.46897 * 111.00421 * 180.02562 * 6 5 4 8 8 H 1.09007 * 110.77955 * 323.21826 * 7 6 5 9 9 C 1.55153 * 110.72111 * 86.45283 * 7 6 5 10 10 C 1.54912 * 101.58230 * 153.86794 * 9 7 6 11 11 N 1.47421 * 104.83107 * 322.99299 * 10 9 7 12 12 C 1.34775 * 125.64649 * 204.09463 * 11 10 9 13 13 O 1.21284 * 120.00295 * 180.02562 * 12 11 10 14 14 C 1.50708 * 119.99957 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47016 * 299.99635 * 20 18 16 23 23 H 1.48495 * 109.47483 * 59.99992 * 20 18 16 24 24 C 1.47014 * 108.70511 * 24.35609 * 11 10 9 25 25 H 1.09005 * 109.88315 * 239.29631 * 24 11 10 26 26 C 1.52998 * 109.88541 * 118.12953 * 24 11 10 27 27 N 1.30178 * 106.39310 * 0.25898 * 4 3 2 28 28 O 1.20920 * 111.60440 * 359.53732 * 27 4 3 29 29 H 1.09000 * 109.46476 * 90.00293 * 1 2 3 30 30 H 1.08990 * 109.47425 * 210.00115 * 1 2 3 31 31 H 1.09001 * 109.47172 * 330.00631 * 1 2 3 32 32 H 1.08003 * 128.01125 * 359.94353 * 3 2 1 33 33 H 1.09003 * 109.47155 * 335.00034 * 5 4 3 34 34 H 1.08998 * 109.47614 * 214.99765 * 5 4 3 35 35 H 1.00905 * 111.00120 * 56.04690 * 6 5 4 36 36 H 1.08994 * 111.00496 * 35.79389 * 9 7 6 37 37 H 1.09003 * 111.03753 * 271.95636 * 9 7 6 38 38 H 1.09002 * 110.36666 * 204.15234 * 10 9 7 39 39 H 1.09001 * 110.46061 * 81.87930 * 10 9 7 40 40 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 41 41 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 42 42 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 43 43 H 1.09001 * 109.46601 * 61.45393 * 26 24 11 44 44 H 1.09000 * 109.47226 * 181.45101 * 26 24 11 45 45 H 1.08994 * 109.47222 * 301.45625 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 0.0006 5 6 4.9211 1.2998 0.0014 6 7 5.4038 1.4434 1.3814 7 6 6.6717 2.1841 1.4213 8 1 7.2966 1.9276 0.5658 9 6 6.4129 3.7131 1.4730 10 6 7.6972 4.2224 2.1737 11 7 8.0164 3.1882 3.1746 12 6 8.7366 3.3779 4.2979 13 8 8.9385 2.4504 5.0528 14 6 9.2911 4.7427 4.6159 15 16 10.2041 4.6741 6.1772 16 6 10.7255 6.3527 6.3008 17 1 10.4546 7.0602 5.5312 18 6 11.4843 6.7655 7.3872 19 7 11.8148 5.9029 8.3250 20 14 12.0363 8.5452 7.5186 21 1 12.8281 8.7274 8.7616 22 1 12.8751 8.8913 6.3429 23 1 10.8455 9.4315 7.5552 24 6 7.4245 1.9141 2.7413 25 1 6.7264 1.5537 3.4969 26 6 8.5277 0.8791 2.5120 27 7 3.4763 -0.7565 -0.0047 28 8 2.3094 -1.0737 0.0006 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 2.0346 2.1270 -0.0008 33 1 4.7634 2.2871 -0.4328 34 1 5.6609 0.7578 -0.5877 35 1 5.4965 0.5431 1.8276 36 1 5.5276 3.9396 2.0672 37 1 6.3242 4.1291 0.4694 38 1 7.5089 5.1782 2.6627 39 1 8.5108 4.3187 1.4549 40 1 8.4716 5.4560 4.7049 41 1 9.9619 5.0576 3.8167 42 1 11.5278 4.9788 8.2570 43 1 9.0612 0.7038 3.4462 44 1 8.0838 -0.0546 2.1664 45 1 9.2239 1.2506 1.7602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700811291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -1.695443 kcal Electronic energy + Delta-G solvation = -26186.976792 eV Core-core repulsion = 22332.746357 eV Total energy + Delta-G solvation = -3854.230435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.89714 -41.40019 -39.14938 -36.88813 -34.80702 -34.75416 -34.09936 -32.80282 -31.91397 -30.09037 -28.64092 -27.66361 -27.08541 -25.41800 -24.13418 -23.86139 -21.73593 -21.11154 -20.61277 -19.89062 -18.66019 -18.22631 -18.18075 -17.62139 -16.97794 -16.65126 -16.35383 -15.79956 -15.73769 -15.56721 -15.02053 -14.75511 -14.74892 -14.62355 -14.39797 -14.12466 -13.94365 -13.94129 -13.87866 -13.61183 -13.37074 -13.21740 -13.13797 -12.78058 -12.73521 -12.42554 -12.18817 -11.97030 -11.95440 -11.74548 -11.56257 -11.21570 -11.10171 -10.99244 -10.34088 -10.23425 -9.81241 -9.60832 -8.93532 -8.89570 -6.29242 0.52588 1.10605 1.23347 1.45860 1.51276 1.60687 1.80686 1.94023 2.25453 2.33525 2.98414 3.01643 3.05697 3.25626 3.31941 3.53618 3.56038 3.74869 3.94532 4.08547 4.14486 4.17421 4.23331 4.26987 4.30313 4.31188 4.37113 4.46449 4.54378 4.62482 4.71295 4.73468 4.74900 4.88670 4.92819 4.97849 5.06064 5.10946 5.19752 5.28114 5.34662 5.63035 5.85102 6.06519 6.13260 6.31477 7.01571 7.05659 7.30383 8.49724 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001816 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.926103 B =15417.191158 C =15699.124803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.228 4.228 4 C 0.013 3.987 5 C 0.143 3.857 6 N -0.675 5.675 7 C 0.092 3.908 8 H 0.084 0.916 9 C -0.109 4.109 10 C 0.087 3.913 11 N -0.610 5.610 12 C 0.545 3.455 13 O -0.564 6.564 14 C -0.099 4.099 15 S -0.196 6.196 16 C -0.613 4.613 17 H 0.076 0.924 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.137 2.863 21 H -0.280 1.280 22 H -0.262 1.262 23 H -0.262 1.262 24 C 0.134 3.866 25 H 0.062 0.938 26 C -0.159 4.159 27 N -0.399 5.399 28 O 0.079 5.921 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.194 0.806 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.342 0.658 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.561 -6.221 -26.195 35.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.249 4.249 4 C -0.145 4.145 5 C 0.014 3.986 6 N -0.308 5.308 7 C -0.018 4.018 8 H 0.101 0.899 9 C -0.147 4.147 10 C -0.035 4.035 11 N -0.345 5.345 12 C 0.333 3.667 13 O -0.443 6.443 14 C -0.250 4.250 15 S 0.030 5.970 16 C -0.761 4.761 17 H 0.094 0.906 18 C -0.222 4.222 19 N -0.548 5.548 20 Si 0.954 3.046 21 H -0.206 1.206 22 H -0.187 1.187 23 H -0.187 1.187 24 C 0.030 3.970 25 H 0.080 0.920 26 C -0.218 4.218 27 N -0.106 5.106 28 O 0.015 5.985 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.211 0.789 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.938 -7.043 -23.985 33.259 hybrid contribution -0.451 -0.422 -1.490 1.612 sum -22.388 -7.464 -25.475 34.726 Atomic orbital electron populations 1.20562 0.81214 1.05894 1.05456 1.25287 0.97946 0.85404 1.01041 1.22738 0.90415 1.02209 1.09579 1.23778 0.98624 0.89656 1.02466 1.20299 0.88854 0.99803 0.89659 1.60528 1.28921 1.24480 1.16878 1.22533 0.88923 0.95544 0.94789 0.89859 1.22846 0.96332 0.92752 1.02776 1.22736 0.98647 0.91566 0.90513 1.48405 1.52373 1.12241 1.21444 1.19726 0.77612 0.89345 0.80000 1.90680 1.59501 1.44588 1.49495 1.23151 1.03168 0.97541 1.01158 1.85088 1.67926 1.16820 1.27120 1.24024 1.42959 0.94372 1.14703 0.90563 1.27874 0.93042 1.10576 0.90736 1.70922 1.43882 1.05194 1.34790 0.82720 0.77188 0.67461 0.77198 1.20561 1.18686 1.18676 1.21652 0.94491 0.84242 0.96642 0.91989 1.22109 0.98862 0.99052 1.01731 1.73846 0.97971 1.17613 1.21172 1.84770 1.11326 1.34435 1.67971 0.87741 0.89212 0.87285 0.78881 0.86186 0.92964 0.83953 0.89971 0.86448 0.89625 0.89290 0.87365 0.87301 0.92954 0.94352 0.90042 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 71.24 0.74 0.52 16 2 C -0.03 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -2.77 11.06 22.40 0.25 -2.52 16 4 C 0.01 0.22 6.84 43.58 0.30 0.52 16 5 C 0.14 1.74 6.13 85.56 0.52 2.27 16 6 N -0.68 -10.19 6.29 -489.43 -3.08 -13.27 16 7 C 0.09 1.37 2.77 46.11 0.13 1.50 16 8 H 0.08 1.01 7.60 -2.38 -0.02 0.99 16 9 C -0.11 -1.36 6.71 31.99 0.21 -1.14 16 10 C 0.09 1.57 6.69 86.86 0.58 2.15 16 11 N -0.61 -17.03 3.06 -788.04 -2.41 -19.44 16 12 C 0.55 21.41 7.66 87.66 0.67 22.08 16 13 O -0.56 -27.33 14.91 -3.04 -0.05 -27.38 16 14 C -0.10 -4.08 5.16 71.24 0.37 -3.71 16 15 S -0.20 -11.06 19.60 -56.49 -1.11 -12.17 16 16 C -0.61 -35.70 9.50 67.95 0.65 -35.05 16 17 H 0.08 4.13 7.80 -2.92 -0.02 4.11 16 18 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 19 N -0.91 -58.63 13.67 21.65 0.30 -58.33 16 20 Si 1.14 49.37 29.92 68.60 2.05 51.42 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 C 0.13 3.18 2.99 45.35 0.14 3.32 16 25 H 0.06 1.75 7.97 -2.38 -0.02 1.73 16 26 C -0.16 -3.90 9.11 71.98 0.66 -3.25 16 27 N -0.40 -8.29 12.07 -49.55 -0.60 -8.89 16 28 O 0.08 1.46 11.20 71.65 0.80 2.26 16 29 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.12 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.05 0.63 8.09 -2.39 -0.02 0.61 16 35 H 0.34 6.06 8.44 -89.69 -0.76 5.30 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 1.51 7.48 -2.39 -0.02 1.50 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.11 4.07 7.85 -2.39 -0.02 4.06 16 41 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 42 H 0.26 17.40 7.12 -92.71 -0.66 16.74 16 43 H 0.04 1.25 6.89 -2.39 -0.02 1.23 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -84.04 388.79 2.13 -81.91 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.35 Total: 18.09 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.87 Total: -14.19 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -5.80 Total: -99.94 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.76 Total: -25.12 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -1.11 Total: -12.17 kcal Total: -84.04 2.13 -81.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.216 kcal (2) G-P(sol) polarization free energy of solvation -84.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds