Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34480 * 126.83841 * 2 1 4 4 N 1.36450 * 108.85898 * 180.26708 * 3 2 1 5 5 H 0.97003 * 124.85397 * 179.69729 * 4 3 2 6 6 C 1.34656 * 110.29486 * 359.71227 * 4 3 2 7 7 C 1.36766 * 108.40196 * 359.97438 * 6 4 3 8 8 C 1.47258 * 126.94898 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00622 * 174.31073 * 8 7 6 10 10 N 1.34774 * 119.99700 * 354.31303 * 8 7 6 11 11 C 1.46501 * 120.00099 * 7.62354 * 10 8 7 12 12 C 1.46500 * 120.00065 * 187.62450 * 10 8 7 13 13 H 1.09004 * 109.47240 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.47380 * 239.99755 * 12 10 8 15 15 C 1.53003 * 109.47415 * 119.99782 * 12 10 8 16 16 N 1.46504 * 109.47124 * 305.00403 * 15 12 10 17 17 C 1.34778 * 119.99941 * 179.97438 * 16 15 12 18 18 O 1.21276 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99583 * 179.97438 * 17 16 15 20 20 S 1.81004 * 109.46871 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99827 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00178 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99661 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00057 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46863 * 90.00717 * 25 23 21 27 27 H 1.48506 * 109.46769 * 209.99977 * 25 23 21 28 28 H 1.48490 * 109.47292 * 330.00200 * 25 23 21 29 29 H 1.08995 * 109.47058 * 270.20519 * 1 2 3 30 30 H 1.09012 * 109.46885 * 30.20128 * 1 2 3 31 31 H 1.09001 * 109.47428 * 150.19985 * 1 2 3 32 32 H 1.08003 * 125.57623 * 359.97438 * 3 2 1 33 33 H 1.08008 * 125.80261 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47091 * 67.00027 * 11 10 8 35 35 H 1.08997 * 109.46925 * 306.99505 * 11 10 8 36 36 H 1.09006 * 109.46981 * 186.99886 * 11 10 8 37 37 H 1.08998 * 109.46886 * 59.99913 * 14 12 10 38 38 H 1.08999 * 109.47337 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.47308 * 299.99832 * 14 12 10 40 40 H 1.09002 * 109.47125 * 64.99952 * 15 12 10 41 41 H 1.08997 * 109.47566 * 185.00207 * 15 12 10 42 42 H 0.97001 * 119.99944 * 359.97438 * 16 15 12 43 43 H 1.09002 * 109.47045 * 299.99824 * 19 17 16 44 44 H 1.09007 * 109.47282 * 59.99808 * 19 17 16 45 45 H 0.97000 * 120.00012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0060 5 1 4.3841 1.2411 -0.0115 6 6 3.6655 -0.6904 -0.0036 7 6 2.3863 -1.1742 0.0047 8 6 1.9748 -2.5881 0.0093 9 8 0.7991 -2.8789 0.1211 10 7 2.9009 -3.5598 -0.1103 11 6 4.3260 -3.2217 -0.0769 12 6 2.4826 -4.9543 -0.2737 13 1 1.3939 -5.0094 -0.2746 14 6 3.0340 -5.7911 0.8825 15 6 3.0223 -5.4968 -1.5986 16 7 2.5917 -4.6255 -2.6948 17 6 2.9521 -4.9088 -3.9622 18 8 3.6332 -5.8848 -4.1952 19 6 2.5086 -4.0127 -5.0898 20 16 3.1484 -4.6536 -6.6570 21 6 2.4988 -3.4500 -7.7677 22 1 1.9035 -2.6319 -7.3898 23 6 2.7521 -3.5532 -9.1285 24 7 2.2672 -2.6537 -9.9583 25 14 3.7823 -4.9677 -9.7821 26 1 2.8971 -6.1133 -10.1126 27 1 4.5038 -4.5310 -11.0045 28 1 4.7649 -5.3831 -8.7492 29 1 -0.3633 0.0037 1.0276 30 1 -0.3633 0.8883 -0.5170 31 1 -0.3634 -0.8918 -0.5107 32 1 1.9870 2.1058 -0.0004 33 1 4.5663 -1.2863 -0.0068 34 1 4.5907 -2.8614 0.9172 35 1 4.5321 -2.4440 -0.8121 36 1 4.9153 -4.1084 -0.3109 37 1 2.6495 -5.4046 1.8263 38 1 2.7224 -6.8285 0.7611 39 1 4.1226 -5.7361 0.8839 40 1 4.1114 -5.5248 -1.5631 41 1 2.6382 -6.5036 -1.7624 42 1 2.0472 -3.8446 -2.5084 43 1 1.4195 -3.9856 -5.1254 44 1 2.8920 -3.0056 -4.9258 45 1 2.4439 -2.7260 -10.9093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701169450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = -11.199324 kcal Electronic energy + Delta-G solvation = -27161.973296 eV Core-core repulsion = 23307.330742 eV Total energy + Delta-G solvation = -3854.642554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58405 -39.98084 -38.92281 -36.68424 -34.26230 -32.63933 -32.42948 -32.36726 -29.75641 -29.33423 -27.69476 -26.57155 -25.98826 -25.50383 -23.56499 -21.06116 -20.46257 -20.17435 -19.04894 -18.03214 -17.84411 -16.96489 -16.47214 -16.33861 -15.81790 -15.45241 -15.04298 -14.92413 -14.53319 -14.41715 -13.91714 -13.80078 -13.65544 -13.42960 -13.23130 -13.02784 -12.94538 -12.80765 -12.77561 -12.61870 -12.55619 -12.21292 -11.93496 -11.84085 -11.49408 -11.24818 -11.16599 -10.99434 -10.57994 -9.93857 -9.84395 -9.50527 -9.00480 -8.99615 -8.92040 -8.81077 -8.51075 -8.47889 -6.89389 -6.26921 -3.98350 1.51147 2.17377 2.63888 2.80942 3.01014 3.02953 3.33010 3.34291 3.37239 3.51383 3.70298 4.34715 4.37188 4.53342 4.61402 4.72149 4.75923 4.79865 4.87121 4.96236 5.08370 5.12041 5.13796 5.23792 5.30139 5.31791 5.35891 5.43110 5.56645 5.62825 5.73579 5.73821 5.81007 5.86549 5.93800 6.06905 6.09006 6.30260 6.56482 6.58269 6.65895 7.14586 7.19757 7.65273 7.96324 8.12013 8.44501 8.52698 9.19235 10.82429 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.002977 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.733933 B = 9404.071172 C =10884.342276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.108 4.108 3 C -0.027 4.027 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.027 3.973 7 C -0.229 4.229 8 C 0.590 3.410 9 O -0.539 6.539 10 N -0.611 5.611 11 C 0.065 3.935 12 C 0.125 3.875 13 H 0.110 0.890 14 C -0.157 4.157 15 C 0.112 3.888 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.522 6.522 19 C -0.123 4.123 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.400 0.600 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 5.003 27.263 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.154 4.154 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.109 4.109 7 C -0.240 4.240 8 C 0.381 3.619 9 O -0.417 6.417 10 N -0.345 5.345 11 C -0.078 4.078 12 C 0.022 3.978 13 H 0.128 0.872 14 C -0.215 4.215 15 C -0.013 4.013 16 N -0.386 5.386 17 C 0.317 3.683 18 O -0.397 6.397 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.185 0.815 33 H 0.209 0.791 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.889 3.386 26.749 27.402 hybrid contribution -0.151 1.430 -0.207 1.453 sum 4.738 4.816 26.542 27.388 Atomic orbital electron populations 1.20184 0.89265 1.02708 1.01834 1.20555 0.95646 0.90277 1.04901 1.21622 0.82546 0.99296 1.11985 1.41636 1.08320 1.06932 1.57508 0.74618 1.23286 0.99643 0.83827 1.04108 1.20275 0.92788 0.92550 1.18381 1.17484 0.84907 0.84098 0.75398 1.90757 1.17394 1.83405 1.50149 1.47687 1.06429 1.06617 1.73731 1.22276 0.81712 1.02498 1.01318 1.21371 1.02125 0.80393 0.93911 0.87216 1.22059 1.01544 1.00110 0.97800 1.21691 1.00040 0.94570 0.85024 1.45888 1.56222 1.30382 1.06102 1.20252 0.79367 0.85641 0.83005 1.90689 1.37295 1.28142 1.83567 1.23270 1.04931 1.01893 0.97298 1.84728 1.70116 1.39575 0.97092 1.22332 1.38434 1.12540 0.93539 0.89410 1.24712 0.94851 0.96036 0.95688 1.69944 1.43802 1.34384 1.03640 0.86733 0.82092 0.82663 0.80344 1.19194 1.19976 1.15941 0.91900 0.92274 0.90412 0.81479 0.79114 0.91926 0.90570 0.90148 0.91683 0.90903 0.92008 0.91322 0.90369 0.76600 0.88543 0.88663 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.93 36.00 0.36 -0.51 16 2 C -0.11 -1.15 6.35 -102.54 -0.65 -1.80 16 3 C -0.03 -0.21 11.82 -16.83 -0.20 -0.41 16 4 N -0.55 -3.41 5.90 -12.85 -0.08 -3.48 16 5 H 0.42 1.17 8.96 -40.82 -0.37 0.80 16 6 C 0.03 0.20 9.97 -16.85 -0.17 0.04 16 7 C -0.23 -2.47 6.22 -103.35 -0.64 -3.11 16 8 C 0.59 7.07 7.35 -12.60 -0.09 6.98 16 9 O -0.54 -8.15 14.76 5.26 0.08 -8.07 16 10 N -0.61 -5.64 2.24 -175.26 -0.39 -6.04 16 11 C 0.06 0.40 7.75 59.85 0.46 0.87 16 12 C 0.13 1.16 2.74 -67.93 -0.19 0.98 16 13 H 0.11 1.22 6.92 -51.93 -0.36 0.86 16 14 C -0.16 -1.08 9.19 37.16 0.34 -0.74 16 15 C 0.11 1.24 4.96 -4.04 -0.02 1.22 16 16 N -0.73 -10.11 5.39 -60.29 -0.32 -10.43 16 17 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 18 O -0.52 -11.29 15.86 5.56 0.09 -11.20 16 19 C -0.12 -2.49 6.16 36.01 0.22 -2.27 16 20 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 21 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 22 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 23 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 25 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.97 6.98 -51.93 -0.36 0.61 16 32 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.19 0.87 4.13 -52.48 -0.22 0.65 16 34 H 0.06 0.28 7.44 -51.93 -0.39 -0.11 16 35 H 0.08 0.46 5.45 -51.93 -0.28 0.17 16 36 H 0.08 0.45 6.15 -51.93 -0.32 0.13 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.36 7.22 -51.93 -0.37 -0.02 16 40 H 0.07 0.74 7.06 -51.93 -0.37 0.38 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.40 5.27 7.87 -40.82 -0.32 4.95 16 43 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 44 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -37.90 380.76 -7.59 -45.48 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.32 Total: 3.81 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.45 Total: -1.32 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.02 Total: -46.03 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.17 Total: -19.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.90 -7.59 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701169450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.283 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds