Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34480 * 126.83841 * 2 1 4 4 N 1.36450 * 108.85898 * 180.26708 * 3 2 1 5 5 H 0.97003 * 124.85397 * 179.69729 * 4 3 2 6 6 C 1.34656 * 110.29486 * 359.71227 * 4 3 2 7 7 C 1.36766 * 108.40196 * 359.97438 * 6 4 3 8 8 C 1.47258 * 126.94898 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00622 * 174.31073 * 8 7 6 10 10 N 1.34774 * 119.99700 * 354.31303 * 8 7 6 11 11 C 1.46501 * 120.00099 * 7.62354 * 10 8 7 12 12 C 1.46500 * 120.00065 * 187.62450 * 10 8 7 13 13 H 1.09004 * 109.47240 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.47380 * 239.99755 * 12 10 8 15 15 C 1.53003 * 109.47415 * 119.99782 * 12 10 8 16 16 N 1.46504 * 109.47124 * 305.00403 * 15 12 10 17 17 C 1.34778 * 119.99941 * 179.97438 * 16 15 12 18 18 O 1.21276 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99583 * 179.97438 * 17 16 15 20 20 S 1.81004 * 109.46871 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99827 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00178 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99661 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00057 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46863 * 90.00717 * 25 23 21 27 27 H 1.48506 * 109.46769 * 209.99977 * 25 23 21 28 28 H 1.48490 * 109.47292 * 330.00200 * 25 23 21 29 29 H 1.08995 * 109.47058 * 270.20519 * 1 2 3 30 30 H 1.09012 * 109.46885 * 30.20128 * 1 2 3 31 31 H 1.09001 * 109.47428 * 150.19985 * 1 2 3 32 32 H 1.08003 * 125.57623 * 359.97438 * 3 2 1 33 33 H 1.08008 * 125.80261 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47091 * 67.00027 * 11 10 8 35 35 H 1.08997 * 109.46925 * 306.99505 * 11 10 8 36 36 H 1.09006 * 109.46981 * 186.99886 * 11 10 8 37 37 H 1.08998 * 109.46886 * 59.99913 * 14 12 10 38 38 H 1.08999 * 109.47337 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.47308 * 299.99832 * 14 12 10 40 40 H 1.09002 * 109.47125 * 64.99952 * 15 12 10 41 41 H 1.08997 * 109.47566 * 185.00207 * 15 12 10 42 42 H 0.97001 * 119.99944 * 359.97438 * 16 15 12 43 43 H 1.09002 * 109.47045 * 299.99824 * 19 17 16 44 44 H 1.09007 * 109.47282 * 59.99808 * 19 17 16 45 45 H 0.97000 * 120.00012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0060 5 1 4.3841 1.2411 -0.0115 6 6 3.6655 -0.6904 -0.0036 7 6 2.3863 -1.1742 0.0047 8 6 1.9748 -2.5881 0.0093 9 8 0.7991 -2.8789 0.1211 10 7 2.9009 -3.5598 -0.1103 11 6 4.3260 -3.2217 -0.0769 12 6 2.4826 -4.9543 -0.2737 13 1 1.3939 -5.0094 -0.2746 14 6 3.0340 -5.7911 0.8825 15 6 3.0223 -5.4968 -1.5986 16 7 2.5917 -4.6255 -2.6948 17 6 2.9521 -4.9088 -3.9622 18 8 3.6332 -5.8848 -4.1952 19 6 2.5086 -4.0127 -5.0898 20 16 3.1484 -4.6536 -6.6570 21 6 2.4988 -3.4500 -7.7677 22 1 1.9035 -2.6319 -7.3898 23 6 2.7521 -3.5532 -9.1285 24 7 2.2672 -2.6537 -9.9583 25 14 3.7823 -4.9677 -9.7821 26 1 2.8971 -6.1133 -10.1126 27 1 4.5038 -4.5310 -11.0045 28 1 4.7649 -5.3831 -8.7492 29 1 -0.3633 0.0037 1.0276 30 1 -0.3633 0.8883 -0.5170 31 1 -0.3634 -0.8918 -0.5107 32 1 1.9870 2.1058 -0.0004 33 1 4.5663 -1.2863 -0.0068 34 1 4.5907 -2.8614 0.9172 35 1 4.5321 -2.4440 -0.8121 36 1 4.9153 -4.1084 -0.3109 37 1 2.6495 -5.4046 1.8263 38 1 2.7224 -6.8285 0.7611 39 1 4.1226 -5.7361 0.8839 40 1 4.1114 -5.5248 -1.5631 41 1 2.6382 -6.5036 -1.7624 42 1 2.0472 -3.8446 -2.5084 43 1 1.4195 -3.9856 -5.1254 44 1 2.8920 -3.0056 -4.9258 45 1 2.4439 -2.7260 -10.9093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701169450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = -38.568125 kcal Electronic energy + Delta-G solvation = -27163.160096 eV Core-core repulsion = 23307.330742 eV Total energy + Delta-G solvation = -3855.829354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23074 -40.97923 -40.13379 -37.62156 -35.36602 -34.68363 -33.37375 -33.24540 -31.07287 -30.15676 -28.32232 -27.90963 -27.25679 -26.83614 -24.31966 -21.79675 -21.74903 -20.98854 -19.86439 -19.74105 -18.64404 -17.91830 -17.76235 -17.53965 -17.09140 -16.75440 -16.38716 -16.26502 -15.72014 -15.16360 -15.07741 -14.95698 -14.78015 -14.68974 -14.33308 -14.02498 -13.91795 -13.85114 -13.58102 -13.44896 -13.35788 -13.32850 -13.14147 -13.00404 -12.89642 -12.60933 -12.54218 -12.19114 -11.89277 -11.85784 -11.17987 -11.05828 -10.82544 -10.57283 -10.17289 -9.77723 -9.46929 -9.15140 -9.01205 -8.52365 -6.23909 0.81190 0.96500 1.31820 1.45790 1.51062 1.52312 1.54849 1.94184 2.22110 2.26371 2.52189 2.55177 2.69538 2.85745 3.59664 3.77937 3.91205 3.99608 4.10831 4.16743 4.21703 4.25792 4.26291 4.41764 4.47999 4.58601 4.62798 4.64893 4.72402 4.80620 4.87348 4.89495 4.92943 5.04618 5.16352 5.24550 5.33783 5.37114 5.61867 5.69513 5.85598 6.00461 6.10088 6.33758 6.45436 6.71529 6.92140 7.10862 7.30393 8.60414 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.002977 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.733933 B = 9404.071172 C =10884.342276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.152 4.152 3 C -0.016 4.016 4 N -0.537 5.537 5 H 0.436 0.564 6 C 0.047 3.953 7 C -0.269 4.269 8 C 0.582 3.418 9 O -0.586 6.586 10 N -0.606 5.606 11 C 0.054 3.946 12 C 0.132 3.868 13 H 0.087 0.913 14 C -0.149 4.149 15 C 0.112 3.888 16 N -0.711 5.711 17 C 0.539 3.461 18 O -0.556 6.556 19 C -0.114 4.114 20 S -0.163 6.163 21 C -0.534 4.534 22 H 0.058 0.942 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.916 3.084 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.234 1.234 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.194 0.806 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.404 0.596 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 5.010 28.686 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C -0.144 4.144 4 N -0.132 5.132 5 H 0.277 0.723 6 C -0.090 4.090 7 C -0.279 4.279 8 C 0.375 3.625 9 O -0.468 6.468 10 N -0.339 5.339 11 C -0.087 4.087 12 C 0.028 3.972 13 H 0.105 0.895 14 C -0.207 4.207 15 C -0.012 4.012 16 N -0.364 5.364 17 C 0.324 3.676 18 O -0.434 6.434 19 C -0.265 4.265 20 S 0.064 5.936 21 C -0.681 4.681 22 H 0.076 0.924 23 C -0.159 4.159 24 N -0.556 5.556 25 Si 0.738 3.262 26 H -0.187 1.187 27 H -0.181 1.181 28 H -0.158 1.158 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.211 0.789 33 H 0.239 0.761 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.240 0.760 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.469 3.428 28.210 29.382 hybrid contribution -0.986 1.531 -0.512 1.891 sum 6.483 4.959 27.698 28.875 Atomic orbital electron populations 1.20074 0.90138 1.01802 1.01453 1.20796 0.95837 0.91669 1.07470 1.21954 0.82802 0.99763 1.09923 1.41704 1.08561 1.06916 1.55987 0.72332 1.23681 0.99381 0.84396 1.01564 1.20382 0.94399 0.91989 1.21165 1.17811 0.84630 0.85117 0.74932 1.90725 1.19336 1.84118 1.52585 1.47733 1.07464 1.06019 1.72672 1.22557 0.79699 1.03412 1.03025 1.21277 1.00961 0.81037 0.93932 0.89475 1.22007 1.02533 0.99939 0.96214 1.21907 1.00800 0.93984 0.84502 1.45745 1.54863 1.30460 1.05313 1.19807 0.79236 0.84787 0.83742 1.90680 1.39179 1.29380 1.84131 1.23262 1.05180 1.02823 0.95198 1.84555 1.70497 1.39022 0.99536 1.22477 1.38216 1.12654 0.94772 0.92420 1.25595 0.95923 0.98486 0.95926 1.70025 1.45068 1.36135 1.04336 0.85842 0.80658 0.79508 0.80197 1.18723 1.18133 1.15764 0.92128 0.90900 0.93437 0.78918 0.76112 0.89473 0.90024 0.88975 0.91959 0.90026 0.90180 0.90028 0.90444 0.76046 0.87895 0.87357 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.93 71.24 0.71 -1.01 16 2 C -0.15 -3.22 6.35 -18.51 -0.12 -3.34 16 3 C -0.02 -0.22 11.82 83.11 0.98 0.76 16 4 N -0.54 -5.03 5.90 -194.56 -1.15 -6.18 16 5 H 0.44 0.81 8.96 -92.71 -0.83 -0.02 16 6 C 0.05 0.57 9.97 83.91 0.84 1.41 16 7 C -0.27 -5.60 6.22 -19.04 -0.12 -5.72 16 8 C 0.58 14.00 7.35 86.61 0.64 14.64 16 9 O -0.59 -18.74 14.76 -4.10 -0.06 -18.80 16 10 N -0.61 -10.35 2.24 -826.65 -1.86 -12.20 16 11 C 0.05 0.50 7.75 127.77 0.99 1.49 16 12 C 0.13 2.29 2.74 44.99 0.12 2.42 16 13 H 0.09 1.96 6.92 -2.38 -0.02 1.95 16 14 C -0.15 -1.72 9.19 71.98 0.66 -1.06 16 15 C 0.11 2.30 4.96 86.38 0.43 2.72 16 16 N -0.71 -18.80 5.39 -463.05 -2.49 -21.29 16 17 C 0.54 19.15 7.85 87.66 0.69 19.84 16 18 O -0.56 -23.38 15.86 -3.02 -0.05 -23.43 16 19 C -0.11 -4.54 6.16 71.24 0.44 -4.10 16 20 S -0.16 -8.33 18.55 -56.49 -1.05 -9.38 16 21 C -0.53 -31.70 10.04 67.95 0.68 -31.02 16 22 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.92 -56.49 13.97 21.65 0.30 -56.19 16 25 Si 0.92 45.08 27.74 68.60 1.90 46.99 16 26 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.23 -11.38 6.74 99.48 0.67 -10.71 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.31 6.98 -2.39 -0.02 1.30 16 32 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.22 1.12 4.13 -2.91 -0.01 1.11 16 34 H 0.09 0.42 7.44 -2.39 -0.02 0.40 16 35 H 0.08 0.69 5.45 -2.39 -0.01 0.67 16 36 H 0.09 0.68 6.15 -2.38 -0.01 0.66 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.66 7.22 -2.39 -0.02 0.64 16 40 H 0.08 1.53 7.06 -2.39 -0.02 1.52 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.40 10.38 7.87 -92.71 -0.73 9.65 16 43 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 44 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 45 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -84.64 380.76 2.40 -82.24 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.55 Total: 18.02 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 7.41 Total: 0.23 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -5.20 Total: -95.86 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.11 Total: -42.23 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.38 kcal Total: -84.64 2.40 -82.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701169450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.668 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds