Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34472 * 126.16460 * 2 1 4 4 C 1.30259 * 108.70111 * 180.26944 * 3 2 1 5 5 O 1.33973 * 108.75788 * 359.74855 * 4 3 2 6 6 C 1.34332 * 126.16393 * 179.85033 * 2 1 3 7 7 C 1.50699 * 126.44380 * 359.97438 * 6 2 1 8 8 N 1.46902 * 109.46811 * 89.71556 * 7 6 2 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 90.00172 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00020 * 23 21 19 26 26 H 1.48496 * 109.47474 * 330.00056 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08995 * 109.47607 * 270.14504 * 1 2 3 29 29 H 1.08996 * 109.47482 * 30.15169 * 1 2 3 30 30 H 1.09005 * 109.47393 * 150.14928 * 1 2 3 31 31 H 1.07994 * 125.62027 * 179.78059 * 4 3 2 32 32 H 1.09002 * 109.47383 * 329.71434 * 7 6 2 33 33 H 1.08994 * 109.47364 * 209.71437 * 7 6 2 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5733 -0.6447 -0.0041 6 6 2.2997 -1.0845 0.0028 7 6 1.8492 -2.5226 0.0071 8 7 1.6958 -2.9917 -1.3765 9 6 2.9924 -3.0337 -2.0647 10 6 2.7778 -3.3851 -3.5387 11 6 2.0818 -4.7453 -3.6381 12 6 0.7569 -4.6890 -2.8725 13 1 0.1027 -3.9478 -3.3314 14 7 0.1118 -6.0037 -2.9142 15 6 -0.6597 -6.3427 -3.9661 16 8 -0.8194 -5.5595 -4.8783 17 6 -1.3229 -7.6951 -4.0094 18 16 -2.2821 -7.8482 -5.5367 19 6 -2.9297 -9.4738 -5.3297 20 1 -2.6858 -10.0436 -4.4452 21 6 -3.7542 -10.0215 -6.3027 22 7 -4.0478 -9.3287 -7.3827 23 14 -4.4402 -11.7451 -6.0835 24 1 -5.7426 -11.6729 -5.3737 25 1 -4.6362 -12.3729 -7.4149 26 1 -3.4872 -12.5597 -5.2877 27 6 1.0300 -4.2999 -1.4178 28 1 -0.3634 0.0026 1.0276 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8913 -0.5115 31 1 4.4065 1.3434 -0.0106 32 1 0.8940 -2.6026 0.5260 33 1 2.5925 -3.1346 0.5180 34 1 3.6260 -3.7890 -1.5999 35 1 3.4749 -2.0592 -1.9902 36 1 3.7416 -3.4315 -4.0457 37 1 2.1556 -2.6228 -4.0077 38 1 2.7211 -5.5142 -3.2039 39 1 1.8881 -4.9797 -4.6847 40 1 0.2397 -6.6302 -2.1849 41 1 -1.9862 -7.8021 -3.1511 42 1 -0.5614 -8.4744 -3.9793 43 1 -3.6913 -8.4338 -7.4967 44 1 0.0874 -4.2451 -0.8734 45 1 1.6729 -5.0494 -0.9560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713058640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -20.611686 kcal Electronic energy + Delta-G solvation = -26522.868131 eV Core-core repulsion = 22667.817426 eV Total energy + Delta-G solvation = -3855.050704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.71089 -40.07061 -38.60197 -35.55031 -35.18128 -33.43085 -32.54009 -31.78740 -30.63899 -28.86415 -28.15235 -26.27824 -24.86399 -23.62180 -23.16287 -22.44872 -21.04591 -20.40395 -20.12996 -18.35241 -17.54575 -17.33235 -16.68785 -16.45035 -15.77056 -15.53153 -15.36292 -15.10521 -14.61591 -14.47293 -14.13146 -13.91482 -13.84155 -13.56663 -13.51237 -13.33412 -13.17426 -12.94270 -12.42392 -12.39074 -12.36486 -12.13463 -11.86851 -11.64861 -11.35903 -11.16209 -11.04552 -10.92033 -10.89722 -10.76238 -10.20322 -9.60060 -9.51875 -9.13227 -9.04831 -8.98770 -8.80590 -8.23500 -6.68356 -6.63366 -4.01339 1.03780 2.27541 2.37011 2.83561 2.96809 3.30229 3.37077 3.39232 3.54658 3.74532 3.80033 4.22039 4.23686 4.38759 4.50596 4.57946 4.64954 4.76158 4.79032 4.95597 4.98055 5.01986 5.16528 5.21226 5.24873 5.29310 5.30877 5.35499 5.44293 5.48578 5.52912 5.59341 5.65963 5.73108 5.75218 5.84094 5.99146 6.02920 6.06312 6.12206 6.39113 6.48493 6.64534 7.35962 7.59046 7.91021 8.48882 8.49647 9.25810 10.80605 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.001867 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.183852 B =14990.725054 C =15236.003656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 N -0.487 5.487 4 C 0.171 3.829 5 O -0.206 6.206 6 C -0.044 4.044 7 C 0.144 3.856 8 N -0.530 5.530 9 C 0.054 3.946 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.098 0.902 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.280 1.280 26 H -0.287 1.287 27 C 0.052 3.948 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.248 0.752 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.086 0.914 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.158 15.548 19.392 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 N -0.216 5.216 4 C -0.056 4.056 5 O -0.092 6.092 6 C -0.097 4.097 7 C 0.016 3.984 8 N -0.256 5.256 9 C -0.073 4.073 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.116 0.884 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.205 1.205 26 H -0.213 1.213 27 C -0.076 4.076 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.264 0.736 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.478 16.643 16.881 28.311 hybrid contribution 2.219 -1.266 2.720 3.732 sum 17.697 15.378 19.602 30.559 Atomic orbital electron populations 1.20171 0.86291 1.04074 1.02667 1.21524 0.98086 0.87269 1.04196 1.70386 1.01435 1.31889 1.17916 1.27997 0.97616 0.79272 1.00699 1.84426 1.30288 1.24706 1.69801 1.22880 0.80675 0.97455 1.08683 1.20385 1.01432 0.86183 0.90365 1.61801 1.22832 1.27079 1.13853 1.22191 0.89097 1.01064 0.94951 1.21532 1.01008 0.97568 0.95017 1.22010 0.96025 0.97089 1.02048 1.20791 0.94417 0.85730 0.94408 0.88376 1.45969 1.51673 1.17442 1.23751 1.20262 0.77690 0.88688 0.81436 1.90710 1.60344 1.51780 1.35942 1.23317 1.02859 0.96041 1.06002 1.84836 1.60083 1.22733 1.21263 1.23730 1.39017 1.00684 1.12164 0.91592 1.26058 0.94048 1.05579 0.91886 1.70766 1.41901 1.12860 1.26294 0.83288 0.75992 0.73147 0.76257 1.21049 1.20499 1.21320 1.22279 0.99380 0.88911 0.96995 0.90911 0.90542 0.89912 0.73577 0.87221 0.92704 0.94473 0.90687 0.91026 0.90668 0.92092 0.90608 0.76952 0.88963 0.89012 0.90940 0.89591 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.05 36.01 0.36 -0.21 16 2 C 0.01 0.09 7.11 -82.81 -0.59 -0.50 16 3 N -0.49 -4.96 11.29 -11.18 -0.13 -5.08 16 4 C 0.17 1.25 13.23 52.10 0.69 1.94 16 5 O -0.21 -1.75 10.03 5.35 0.05 -1.69 16 6 C -0.04 -0.38 5.94 -35.69 -0.21 -0.59 16 7 C 0.14 0.99 5.12 -4.98 -0.03 0.97 16 8 N -0.53 -4.38 4.65 -236.11 -1.10 -5.47 16 9 C 0.05 0.46 5.31 -3.83 -0.02 0.44 16 10 C -0.11 -1.05 6.09 -26.65 -0.16 -1.22 16 11 C -0.13 -1.45 5.58 -26.61 -0.15 -1.60 16 12 C 0.15 1.70 2.62 -67.85 -0.18 1.53 16 13 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 14 N -0.73 -9.10 5.08 -53.73 -0.27 -9.37 16 15 C 0.53 9.52 7.81 -10.99 -0.09 9.44 16 16 O -0.51 -11.29 15.53 5.56 0.09 -11.20 16 17 C -0.13 -2.58 6.16 36.00 0.22 -2.36 16 18 S -0.12 -3.08 19.60 -107.50 -2.11 -5.19 16 19 C -0.61 -17.41 9.50 30.94 0.29 -17.12 16 20 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 22 N -0.88 -27.45 13.67 55.49 0.76 -26.69 16 23 Si 1.09 24.86 29.92 -169.99 -5.09 19.77 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.05 0.42 4.93 -3.83 -0.02 0.40 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.60 7.80 -51.93 -0.40 0.19 16 31 H 0.25 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.11 0.59 7.65 -51.93 -0.40 0.19 16 33 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.40 3.70 8.60 -40.82 -0.35 3.34 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.28 8.82 7.13 -40.82 -0.29 8.53 16 44 H 0.09 0.62 8.01 -51.93 -0.42 0.21 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -36.74 384.73 -8.83 -45.57 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.87 Total: 1.52 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.03 Total: -7.97 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.74 Total: -46.61 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.14 Total: -12.90 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.74 -8.83 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713058640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.957 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds