Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34472 * 126.16460 * 2 1 4 4 C 1.30259 * 108.70111 * 180.26944 * 3 2 1 5 5 O 1.33973 * 108.75788 * 359.74855 * 4 3 2 6 6 C 1.34332 * 126.16393 * 179.85033 * 2 1 3 7 7 C 1.50699 * 126.44380 * 359.97438 * 6 2 1 8 8 N 1.46902 * 109.46811 * 89.71556 * 7 6 2 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 90.00172 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00020 * 23 21 19 26 26 H 1.48496 * 109.47474 * 330.00056 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08995 * 109.47607 * 270.14504 * 1 2 3 29 29 H 1.08996 * 109.47482 * 30.15169 * 1 2 3 30 30 H 1.09005 * 109.47393 * 150.14928 * 1 2 3 31 31 H 1.07994 * 125.62027 * 179.78059 * 4 3 2 32 32 H 1.09002 * 109.47383 * 329.71434 * 7 6 2 33 33 H 1.08994 * 109.47364 * 209.71437 * 7 6 2 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5733 -0.6447 -0.0041 6 6 2.2997 -1.0845 0.0028 7 6 1.8492 -2.5226 0.0071 8 7 1.6958 -2.9917 -1.3765 9 6 2.9924 -3.0337 -2.0647 10 6 2.7778 -3.3851 -3.5387 11 6 2.0818 -4.7453 -3.6381 12 6 0.7569 -4.6890 -2.8725 13 1 0.1027 -3.9478 -3.3314 14 7 0.1118 -6.0037 -2.9142 15 6 -0.6597 -6.3427 -3.9661 16 8 -0.8194 -5.5595 -4.8783 17 6 -1.3229 -7.6951 -4.0094 18 16 -2.2821 -7.8482 -5.5367 19 6 -2.9297 -9.4738 -5.3297 20 1 -2.6858 -10.0436 -4.4452 21 6 -3.7542 -10.0215 -6.3027 22 7 -4.0478 -9.3287 -7.3827 23 14 -4.4402 -11.7451 -6.0835 24 1 -5.7426 -11.6729 -5.3737 25 1 -4.6362 -12.3729 -7.4149 26 1 -3.4872 -12.5597 -5.2877 27 6 1.0300 -4.2999 -1.4178 28 1 -0.3634 0.0026 1.0276 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8913 -0.5115 31 1 4.4065 1.3434 -0.0106 32 1 0.8940 -2.6026 0.5260 33 1 2.5925 -3.1346 0.5180 34 1 3.6260 -3.7890 -1.5999 35 1 3.4749 -2.0592 -1.9902 36 1 3.7416 -3.4315 -4.0457 37 1 2.1556 -2.6228 -4.0077 38 1 2.7211 -5.5142 -3.2039 39 1 1.8881 -4.9797 -4.6847 40 1 0.2397 -6.6302 -2.1849 41 1 -1.9862 -7.8021 -3.1511 42 1 -0.5614 -8.4744 -3.9793 43 1 -3.6913 -8.4338 -7.4967 44 1 0.0874 -4.2451 -0.8734 45 1 1.6729 -5.0494 -0.9560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713058640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -49.874672 kcal Electronic energy + Delta-G solvation = -26524.137069 eV Core-core repulsion = 22667.817426 eV Total energy + Delta-G solvation = -3856.319643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.30175 -41.14983 -39.66038 -36.27896 -36.07232 -34.74092 -34.35622 -32.43812 -31.84555 -29.82758 -29.03544 -27.06549 -26.87871 -24.33333 -24.02208 -23.06753 -21.87408 -21.51013 -21.00424 -20.36466 -18.24984 -18.03371 -17.89273 -17.52622 -16.66470 -16.53386 -16.30196 -16.10705 -15.97792 -15.70064 -15.20335 -15.04021 -14.88962 -14.76065 -14.47174 -14.20566 -14.13609 -13.95310 -13.83896 -13.59225 -13.54235 -12.99370 -12.93190 -12.74094 -12.46523 -12.04905 -11.93988 -11.92362 -11.91761 -11.68902 -11.53885 -11.47446 -11.09845 -11.01349 -10.30980 -10.17457 -9.71630 -9.40464 -8.91701 -8.85929 -6.26731 0.45479 1.20289 1.52423 1.53197 1.62045 1.68220 1.79996 1.82700 2.12760 2.35160 2.94372 3.03171 3.15810 3.34305 3.59849 3.66307 3.79757 3.86806 3.93439 3.95618 4.12468 4.18316 4.19306 4.26677 4.39047 4.40471 4.49495 4.54037 4.61584 4.71073 4.75398 4.80373 4.84083 4.87598 4.99399 5.03642 5.15312 5.18443 5.24466 5.40254 5.45772 5.65505 5.86331 5.92891 6.15566 6.45244 6.76712 7.07107 7.18907 8.51750 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.001867 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.183852 B =14990.725054 C =15236.003656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 N -0.528 5.528 4 C 0.181 3.819 5 O -0.212 6.212 6 C -0.050 4.050 7 C 0.148 3.852 8 N -0.544 5.544 9 C 0.062 3.938 10 C -0.108 4.108 11 C -0.128 4.128 12 C 0.152 3.848 13 H 0.065 0.935 14 N -0.705 5.705 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.109 4.109 18 S -0.198 6.198 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.914 5.914 23 Si 1.139 2.861 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.262 1.262 27 C 0.062 3.938 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.289 0.711 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.260 0.740 44 H 0.099 0.901 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.685 14.296 22.554 32.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 N -0.257 5.257 4 C -0.045 4.045 5 O -0.099 6.099 6 C -0.103 4.103 7 C 0.020 3.980 8 N -0.270 5.270 9 C -0.066 4.066 10 C -0.147 4.147 11 C -0.167 4.167 12 C 0.047 3.953 13 H 0.083 0.917 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.260 4.260 18 S 0.028 5.972 19 C -0.760 4.760 20 H 0.094 0.906 21 C -0.224 4.224 22 N -0.549 5.549 23 Si 0.957 3.043 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.186 1.186 27 C -0.065 4.065 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.304 0.696 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.255 0.745 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.040 15.404 20.116 30.534 hybrid contribution 1.874 -0.735 1.807 2.705 sum 18.914 14.669 21.923 32.458 Atomic orbital electron populations 1.20176 0.85677 1.03681 1.03375 1.21855 0.98890 0.87705 1.04901 1.70380 1.02798 1.32777 1.19777 1.28957 0.98070 0.79254 0.98193 1.84437 1.30278 1.25245 1.69905 1.23146 0.80587 0.98047 1.08549 1.20480 1.02739 0.85245 0.89492 1.61712 1.22890 1.27331 1.15057 1.22092 0.89417 1.01174 0.93903 1.21481 1.00939 0.95966 0.96266 1.21940 0.96255 0.98539 0.99963 1.20852 0.93609 0.83934 0.96929 0.91651 1.45655 1.49521 1.18290 1.22453 1.19985 0.78154 0.87593 0.82093 1.90706 1.62395 1.52878 1.38157 1.23223 1.02676 0.97923 1.02194 1.85106 1.62116 1.22903 1.27032 1.24057 1.38570 1.01010 1.12332 0.90578 1.27842 0.94128 1.09278 0.91133 1.70888 1.43527 1.12540 1.27990 0.82682 0.76547 0.68366 0.76709 1.19271 1.20575 1.18602 1.22171 1.00662 0.89483 0.94218 0.89629 0.91556 0.89623 0.69592 0.85593 0.91223 0.93018 0.91207 0.89873 0.92698 0.90270 0.94080 0.74497 0.86799 0.87014 0.92858 0.88272 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.05 71.24 0.72 -0.35 16 2 C -0.01 -0.26 7.11 41.26 0.29 0.04 16 3 N -0.53 -10.35 11.29 -304.06 -3.43 -13.79 16 4 C 0.18 2.34 13.23 130.48 1.73 4.07 16 5 O -0.21 -3.19 10.03 -3.76 -0.04 -3.23 16 6 C -0.05 -0.79 5.94 24.79 0.15 -0.64 16 7 C 0.15 1.62 5.12 85.56 0.44 2.05 16 8 N -0.54 -7.71 4.65 -900.92 -4.19 -11.89 16 9 C 0.06 0.90 5.31 86.33 0.46 1.36 16 10 C -0.11 -1.93 6.09 30.65 0.19 -1.75 16 11 C -0.13 -2.68 5.58 30.67 0.17 -2.51 16 12 C 0.15 3.21 2.62 45.04 0.12 3.33 16 13 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 14 N -0.71 -16.06 5.08 -442.29 -2.25 -18.30 16 15 C 0.54 18.88 7.81 87.65 0.68 19.56 16 16 O -0.56 -25.57 15.53 -3.03 -0.05 -25.62 16 17 C -0.11 -4.15 6.16 71.23 0.44 -3.71 16 18 S -0.20 -10.83 19.60 -56.49 -1.11 -11.94 16 19 C -0.61 -34.99 9.50 67.96 0.65 -34.35 16 20 H 0.08 4.06 7.80 -2.91 -0.02 4.03 16 21 C -0.02 -1.20 5.49 84.86 0.47 -0.74 16 22 N -0.91 -58.11 13.67 21.65 0.30 -57.81 16 23 Si 1.14 49.02 29.92 68.60 2.05 51.07 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 27 C 0.06 0.80 4.93 86.33 0.43 1.23 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.17 7.80 -2.38 -0.02 1.15 16 31 H 0.29 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.13 0.95 7.65 -2.39 -0.02 0.93 16 33 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.07 1.12 6.54 -2.39 -0.02 1.11 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 6.22 8.60 -92.71 -0.80 5.42 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.82 16 43 H 0.26 17.24 7.13 -92.71 -0.66 16.58 16 44 H 0.10 1.07 8.01 -2.39 -0.02 1.05 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -84.09 384.73 -1.48 -85.57 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.31 Total: 18.35 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.92 Total: -12.41 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -9.57 Total: -101.80 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.08 Total: -28.85 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.11 Total: -11.94 kcal Total: -84.09 -1.48 -85.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713058640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -84.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds