Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62284 * 2 1 4 4 C 1.34474 * 108.70179 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.16634 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.46820 * 90.02653 * 5 4 3 7 7 C 1.48562 * 111.00142 * 54.58144 * 6 5 4 8 8 C 1.54377 * 104.59407 * 159.03785 * 7 6 5 9 9 C 1.54266 * 105.06190 * 336.14868 * 8 7 6 10 10 H 1.09000 * 110.32532 * 240.99801 * 9 8 7 11 11 N 1.46501 * 110.32047 * 118.89565 * 9 8 7 12 12 C 1.34773 * 120.00101 * 86.46129 * 11 9 8 13 13 O 1.21284 * 120.00364 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.00044 * 179.97438 * 12 11 9 15 15 S 1.81005 * 109.47130 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00128 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47469 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47010 * 120.00319 * 20 18 16 23 23 H 1.48499 * 109.47111 * 240.00125 * 20 18 16 24 24 C 1.48562 * 110.99842 * 170.00307 * 6 5 4 25 25 C 1.34331 * 107.67184 * 0.26737 * 4 3 2 26 26 C 1.50697 * 126.44614 * 179.73485 * 25 4 3 27 27 O 1.33969 * 125.61470 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47035 * 89.99684 * 1 2 3 29 29 H 1.08997 * 109.47449 * 210.00047 * 1 2 3 30 30 H 1.09006 * 109.46903 * 330.00239 * 1 2 3 31 31 H 1.08998 * 109.46894 * 330.02564 * 5 4 3 32 32 H 1.08997 * 109.47311 * 210.02728 * 5 4 3 33 33 H 1.09000 * 110.41111 * 40.26361 * 7 6 5 34 34 H 1.08989 * 110.41482 * 277.81625 * 7 6 5 35 35 H 1.09005 * 110.32720 * 217.25400 * 8 7 6 36 36 H 1.09003 * 110.32570 * 95.04509 * 8 7 6 37 37 H 0.96998 * 119.99846 * 266.44964 * 11 9 8 38 38 H 1.08996 * 109.47181 * 299.99493 * 14 12 11 39 39 H 1.08996 * 109.47197 * 59.99729 * 14 12 11 40 40 H 0.96996 * 120.00403 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.41528 * 82.17831 * 24 6 5 42 42 H 1.08997 * 110.50874 * 319.78619 * 24 6 5 43 43 H 1.09004 * 109.47158 * 89.99657 * 26 25 4 44 44 H 1.09003 * 109.47039 * 209.99239 * 26 25 4 45 45 H 1.08996 * 109.47055 * 329.99560 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 4.7571 1.5726 -0.0013 6 7 5.1497 1.8663 1.3834 7 6 5.3650 0.6139 2.1529 8 6 6.2573 1.0353 3.3401 9 6 6.9815 2.3115 2.8640 10 1 8.0603 2.1552 2.8589 11 7 6.6365 3.4441 3.7268 12 6 7.3371 3.6690 4.8560 13 8 8.2529 2.9335 5.1582 14 6 6.9825 4.8344 5.7432 15 16 8.0962 4.8674 7.1697 16 6 7.4745 6.2855 8.0105 17 1 6.6411 6.8353 7.5986 18 6 8.0550 6.6954 9.2028 19 7 9.0703 6.0251 9.7051 20 14 7.3963 8.1993 10.0937 21 1 6.2601 8.7708 9.3271 22 1 6.9315 7.8078 11.4487 23 1 8.4733 9.2146 10.2141 24 6 6.4658 2.5538 1.4292 25 6 3.5698 -0.6758 -0.0069 26 6 4.7936 -1.5550 -0.0154 27 8 2.2871 -1.0891 -0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 4.5127 2.5024 -0.5148 32 1 5.5818 1.0793 -0.5159 33 1 5.8757 -0.1271 1.5378 34 1 4.4144 0.2205 2.5127 35 1 6.9806 0.2519 3.5669 36 1 5.6453 1.2516 4.2157 37 1 5.9040 4.0322 3.4853 38 1 7.0838 5.7629 5.1813 39 1 5.9539 4.7288 6.0881 40 1 9.4763 6.3117 10.5380 41 1 6.3440 3.6210 1.2442 42 1 7.1498 2.1182 0.7008 43 1 5.0925 -1.7717 1.0102 44 1 4.5675 -2.4875 -0.5327 45 1 5.6061 -1.0419 -0.5299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713079240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -7.685601 kcal Electronic energy + Delta-G solvation = -26360.386656 eV Core-core repulsion = 22505.896469 eV Total energy + Delta-G solvation = -3854.490187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72110 -39.93920 -38.38469 -35.54696 -34.44054 -33.30589 -32.40352 -31.35590 -30.61954 -29.46014 -28.21405 -26.73554 -25.44179 -24.74040 -22.43134 -21.50582 -21.25303 -20.54950 -20.13904 -17.84193 -17.36227 -16.96697 -16.60007 -16.30268 -15.71395 -15.50245 -14.94195 -14.78203 -14.76313 -14.48235 -14.27624 -13.90513 -13.85467 -13.42754 -13.21838 -13.11909 -13.01127 -12.84273 -12.72788 -12.58604 -12.23176 -12.16306 -11.93559 -11.64434 -11.38381 -11.31672 -11.05163 -11.00655 -10.98476 -10.75970 -10.72550 -9.77569 -9.34440 -9.08609 -9.04827 -8.84283 -8.64960 -8.19992 -6.46833 -6.19402 -3.89351 1.04680 2.25350 2.28433 3.07754 3.13517 3.23541 3.30458 3.35884 3.57644 3.74505 3.78913 4.22923 4.24052 4.31706 4.36318 4.56205 4.66080 4.78852 4.87807 4.91720 4.93452 5.02892 5.07299 5.09248 5.15879 5.18912 5.23663 5.26715 5.33513 5.41387 5.53089 5.61707 5.64470 5.69176 5.71969 5.88509 5.94512 5.95364 6.07183 6.20004 6.46392 6.60857 6.76084 7.43316 7.62744 7.80264 8.38256 8.67389 9.26227 10.88097 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.001928 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.490283 B =14520.476833 C =15256.588318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.464 5.464 4 C -0.002 4.002 5 C 0.127 3.873 6 N -0.500 5.500 7 C 0.030 3.970 8 C -0.136 4.136 9 C 0.147 3.853 10 H 0.096 0.904 11 N -0.727 5.727 12 C 0.533 3.467 13 O -0.520 6.520 14 C -0.153 4.153 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.025 3.975 25 C -0.045 4.045 26 C -0.073 4.073 27 O -0.202 6.202 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 -14.896 -24.810 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.194 5.194 4 C -0.122 4.122 5 C -0.002 4.002 6 N -0.225 5.225 7 C -0.098 4.098 8 C -0.175 4.175 9 C 0.041 3.959 10 H 0.114 0.886 11 N -0.382 5.382 12 C 0.319 3.681 13 O -0.394 6.394 14 C -0.304 4.304 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.504 5.504 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.103 4.103 25 C -0.099 4.099 26 C -0.129 4.129 27 O -0.090 6.090 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.572 -15.228 -23.946 31.038 hybrid contribution -1.075 0.897 -0.254 1.422 sum -13.647 -14.331 -24.200 31.261 Atomic orbital electron populations 1.20252 0.81249 1.05229 1.04586 1.26255 0.96425 0.78520 1.01050 1.70344 1.01454 1.30038 1.17560 1.21189 0.93158 0.91455 1.06441 1.20474 0.90990 0.98048 0.90640 1.65509 1.27156 1.19114 1.10724 1.23302 0.99717 0.91672 0.95101 1.22811 0.98704 0.97663 0.98354 1.21527 0.99947 0.86269 0.88161 0.88607 1.46068 1.36954 1.31006 1.24137 1.20315 0.81497 0.85683 0.80588 1.90691 1.29294 1.47862 1.71602 1.23530 1.06141 0.98338 1.02360 1.85363 1.41412 1.38923 1.17792 1.22916 1.20750 1.14139 1.10387 0.90875 1.24995 0.94771 0.97568 0.96329 1.70027 1.21637 1.38803 1.19885 0.86115 0.78782 0.81363 0.79234 1.19603 1.20592 1.20587 1.23450 0.89629 1.01017 0.96202 1.23147 0.83980 0.95006 1.07768 1.20438 0.90049 0.98397 1.04046 1.84379 1.16459 1.37867 1.70294 0.89011 0.89408 0.87981 0.88653 0.92825 0.93230 0.90560 0.90466 0.90180 0.76384 0.89236 0.89241 0.92278 0.88905 0.92251 0.89315 0.90201 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.18 1.74 8.34 -12.95 -0.11 1.64 16 3 N -0.46 -5.39 11.29 -7.36 -0.08 -5.47 16 4 C 0.00 -0.02 5.77 -82.81 -0.48 -0.50 16 5 C 0.13 1.09 5.40 -4.98 -0.03 1.07 16 6 N -0.50 -4.84 5.48 -231.42 -1.27 -6.11 16 7 C 0.03 0.28 4.75 -2.18 -0.01 0.27 16 8 C -0.14 -1.53 6.78 -25.35 -0.17 -1.71 16 9 C 0.15 1.72 3.36 -66.54 -0.22 1.50 16 10 H 0.10 1.24 7.64 -51.93 -0.40 0.84 16 11 N -0.73 -9.99 5.00 -52.46 -0.26 -10.25 16 12 C 0.53 9.99 7.84 -10.98 -0.09 9.91 16 13 O -0.52 -11.71 15.56 5.55 0.09 -11.62 16 14 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 17 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 20 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.03 0.22 6.10 -2.18 -0.01 0.21 16 25 C -0.05 -0.40 6.72 -35.69 -0.24 -0.64 16 26 C -0.07 -0.39 8.61 36.00 0.31 -0.08 16 27 O -0.20 -1.99 10.78 5.33 0.06 -1.93 16 28 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.35 6.89 -51.93 -0.36 -0.01 16 33 H 0.05 0.37 5.34 -51.93 -0.28 0.09 16 34 H 0.08 0.82 7.77 -51.93 -0.40 0.41 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 37 H 0.40 4.72 8.56 -40.82 -0.35 4.37 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.09 0.79 7.99 -51.93 -0.41 0.38 16 42 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 43 H 0.09 0.44 6.88 -51.93 -0.36 0.08 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.36 7.13 -51.93 -0.37 -0.01 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -36.92 383.33 -9.12 -46.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.67 Total: 0.74 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.25 Total: -4.25 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.88 Total: -47.47 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.14 Total: -13.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.92 -9.12 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713079240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.347 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds