Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35454 * 128.01065 * 2 1 4 4 O 1.34035 * 106.44500 * 179.97438 * 3 2 1 5 5 N 1.20922 * 111.57153 * 359.71228 * 4 3 2 6 6 C 1.30173 * 111.60251 * 0.47811 * 5 4 3 7 7 C 1.50695 * 126.80231 * 179.79559 * 6 5 4 8 8 N 1.46901 * 109.47486 * 269.69083 * 7 6 5 9 9 C 1.47445 * 110.99908 * 63.78483 * 8 7 6 10 10 C 1.54310 * 107.37399 * 236.66331 * 9 8 7 11 11 C 1.55402 * 102.89851 * 337.89453 * 10 9 8 12 12 C 1.47846 * 110.99870 * 302.94636 * 8 7 6 13 13 H 1.09000 * 110.37564 * 27.53249 * 12 8 7 14 14 C 1.52998 * 110.37238 * 265.18991 * 12 8 7 15 15 N 1.46496 * 109.47294 * 59.84852 * 14 12 8 16 16 C 1.34778 * 120.00522 * 185.75105 * 15 14 12 17 17 O 1.21286 * 119.99417 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00425 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47376 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00283 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00122 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00186 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99912 * 179.97438 * 22 20 19 25 25 H 1.48489 * 109.47450 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47219 * 119.99987 * 24 22 20 27 27 H 1.48506 * 109.46888 * 239.99462 * 24 22 20 28 28 H 1.08995 * 109.47680 * 270.04592 * 1 2 3 29 29 H 1.09003 * 109.46958 * 30.04827 * 1 2 3 30 30 H 1.08999 * 109.47234 * 150.03838 * 1 2 3 31 31 H 1.08003 * 126.77088 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47118 * 149.69125 * 7 6 5 33 33 H 1.08996 * 109.47060 * 29.69197 * 7 6 5 34 34 H 1.09007 * 109.88530 * 356.15098 * 9 8 7 35 35 H 1.08995 * 109.88624 * 117.17170 * 9 8 7 36 36 H 1.09004 * 110.70706 * 96.17692 * 10 9 8 37 37 H 1.09002 * 110.70902 * 219.41486 * 10 9 8 38 38 H 1.09001 * 110.87237 * 277.38999 * 11 10 9 39 39 H 1.09006 * 111.02451 * 153.63277 * 11 10 9 40 40 H 1.09003 * 109.47220 * 179.85449 * 14 12 8 41 41 H 1.09003 * 109.47434 * 299.84903 * 14 12 8 42 42 H 0.97003 * 119.99975 * 5.75266 * 15 14 12 43 43 H 1.09004 * 109.47217 * 299.99481 * 18 16 15 44 44 H 1.08998 * 109.47221 * 59.99971 * 18 16 15 45 45 H 0.97002 * 119.99484 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5876 0.5746 0.0006 5 7 3.5878 -0.6346 0.0066 6 6 2.3775 -1.1141 0.0006 7 6 1.9826 -2.5683 0.0008 8 7 1.8547 -3.0413 -1.3841 9 6 3.1508 -2.9818 -2.0845 10 6 2.9556 -2.1082 -3.3415 11 6 1.4225 -2.1861 -3.5834 12 6 0.8764 -2.2254 -2.1343 13 1 0.8254 -1.2183 -1.7205 14 6 -0.5034 -2.8858 -2.1029 15 7 -0.9510 -3.0160 -0.7141 16 6 -2.0917 -3.6764 -0.4327 17 8 -2.7479 -4.1625 -1.3295 18 6 -2.5524 -3.8097 0.9958 19 16 -4.1030 -4.7421 1.0452 20 6 -4.4027 -4.7459 2.7815 21 1 -3.7088 -4.2585 3.4503 22 6 -5.5300 -5.3761 3.2898 23 7 -6.3756 -5.9706 2.4747 24 14 -5.8473 -5.3807 5.1307 25 1 -4.7554 -4.6504 5.8230 26 1 -7.1445 -4.7144 5.4111 27 1 -5.8942 -6.7816 5.6214 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8903 -0.5132 31 1 2.0576 2.1094 -0.0004 32 1 1.0284 -2.6856 0.5143 33 1 2.7461 -3.1521 0.5150 34 1 3.9031 -2.5342 -1.4350 35 1 3.4617 -3.9853 -2.3750 36 1 3.2631 -1.0804 -3.1481 37 1 3.5034 -2.5227 -4.1878 38 1 1.1604 -3.0954 -4.1244 39 1 1.0646 -1.3023 -4.1117 40 1 -1.2129 -2.2717 -2.6574 41 1 -0.4438 -3.8738 -2.5595 42 1 -0.4264 -2.6268 0.0030 43 1 -1.7937 -4.3364 1.5747 44 1 -2.7105 -2.8185 1.4206 45 1 -7.1636 -6.4107 2.8299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713501484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = 42.312533 kcal Electronic energy + Delta-G solvation = -27807.142420 eV Core-core repulsion = 23954.820314 eV Total energy + Delta-G solvation = -3852.322105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.35418 -40.26574 -38.72713 -35.49896 -34.56794 -33.21914 -32.42042 -31.64199 -30.74283 -28.76529 -28.50629 -26.82252 -25.52418 -24.63943 -22.20722 -22.06460 -21.49810 -20.39426 -20.00142 -18.16153 -18.02250 -17.61082 -16.87817 -16.30803 -15.89705 -15.38819 -15.33413 -15.03666 -14.79849 -14.41448 -14.19035 -13.92701 -13.79203 -13.49826 -13.33351 -13.20901 -13.05797 -12.63255 -12.62154 -12.57803 -11.90503 -11.83937 -11.61088 -11.56006 -11.41995 -11.26048 -11.06691 -11.00794 -10.91218 -10.74758 -10.39531 -9.79786 -9.73812 -9.36290 -9.06984 -8.83179 -8.80307 -8.21582 -6.48505 -6.21081 -3.91156 1.10593 1.75793 2.87921 3.03429 3.13838 3.21862 3.28548 3.32892 3.51453 3.69907 3.75419 4.05535 4.20982 4.26520 4.36628 4.49412 4.61534 4.67090 4.83522 4.90622 5.00782 5.10504 5.14195 5.19347 5.21775 5.22466 5.30939 5.37068 5.43121 5.44670 5.48195 5.53500 5.61828 5.68107 5.68418 5.79068 5.88888 5.89667 6.00201 6.13977 6.49414 6.60792 6.67707 7.60513 7.69623 7.87219 8.36079 8.64370 9.24469 10.86359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.002735 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.867273 B =10233.818192 C =11244.194614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.193 4.193 3 C -0.064 4.064 4 O 0.099 5.901 5 N -0.352 5.352 6 C -0.017 4.017 7 C 0.121 3.879 8 N -0.502 5.502 9 C 0.035 3.965 10 C -0.137 4.137 11 C -0.120 4.120 12 C 0.038 3.962 13 H 0.081 0.919 14 C 0.137 3.863 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.216 0.784 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.391 0.609 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.830 15.218 -8.698 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.197 4.197 3 C -0.145 4.145 4 O 0.033 5.967 5 N -0.056 5.056 6 C -0.178 4.178 7 C -0.009 4.009 8 N -0.226 5.226 9 C -0.092 4.092 10 C -0.176 4.176 11 C -0.158 4.158 12 C -0.070 4.070 13 H 0.098 0.902 14 C 0.012 3.988 15 N -0.395 5.395 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.621 13.200 -10.182 26.517 hybrid contribution 0.302 1.887 2.661 3.276 sum 20.923 15.087 -7.520 26.869 Atomic orbital electron populations 1.20569 0.87138 1.04443 1.03777 1.21405 0.98756 0.91650 1.07875 1.25789 0.83046 1.01217 1.04449 1.84813 1.29165 1.15646 1.67085 1.73866 1.22238 0.91309 1.18166 1.24458 0.88881 1.00181 1.04287 1.21063 1.02803 0.84881 0.92112 1.63864 1.07574 1.50361 1.00772 1.22918 0.90888 1.00587 0.94851 1.22761 0.96456 0.99947 0.98412 1.22719 0.94758 1.03149 0.95216 1.23272 0.92418 0.96634 0.94640 0.90171 1.21278 0.92197 1.01657 0.83669 1.46338 1.25714 1.58896 1.08577 1.20292 0.79889 0.77040 0.91075 1.90703 1.54318 1.45926 1.48013 1.23541 1.06289 1.05642 0.95062 1.85406 1.19033 1.68706 1.10019 1.22911 1.11899 1.41464 0.92045 0.90915 1.24990 0.95015 0.94576 0.99013 1.70031 1.12046 1.33433 1.34744 0.86127 0.78268 0.78019 0.83136 1.19636 1.20588 1.20573 0.90062 0.90417 0.89713 0.76758 0.88542 0.88310 0.91617 0.89940 0.91973 0.90402 0.89839 0.90487 0.91390 0.90409 0.77031 0.89296 0.89412 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.63 36.01 0.35 -0.39 16 2 C -0.19 -1.54 5.18 -104.42 -0.54 -2.08 16 3 C -0.06 -0.42 12.26 29.74 0.36 -0.06 16 4 O 0.10 0.89 11.20 17.19 0.19 1.08 16 5 N -0.35 -3.65 11.07 33.42 0.37 -3.28 16 6 C -0.02 -0.16 5.18 -82.10 -0.43 -0.59 16 7 C 0.12 1.16 5.51 -4.98 -0.03 1.13 16 8 N -0.50 -4.94 4.99 -224.82 -1.12 -6.06 16 9 C 0.04 0.31 6.42 -2.84 -0.02 0.30 16 10 C -0.14 -1.06 6.97 -24.77 -0.17 -1.24 16 11 C -0.12 -0.95 6.50 -24.45 -0.16 -1.11 16 12 C 0.04 0.36 2.12 -66.19 -0.14 0.22 16 13 H 0.08 0.71 3.24 -51.93 -0.17 0.54 16 14 C 0.14 1.61 5.01 -4.05 -0.02 1.59 16 15 N -0.74 -9.81 4.46 -60.30 -0.27 -10.08 16 16 C 0.53 9.81 7.85 -10.99 -0.09 9.72 16 17 O -0.52 -11.62 15.85 5.55 0.09 -11.53 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 24 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.71 3.09 -51.93 -0.16 0.55 16 31 H 0.22 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.10 0.91 5.23 -51.93 -0.27 0.64 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.64 6.25 -51.92 -0.32 0.31 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 42 H 0.39 4.38 3.82 -40.82 -0.16 4.22 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -34.87 369.40 -8.25 -43.12 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.11 Total: 2.25 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.46 Total: -8.24 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.29 Total: -44.76 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.28 Total: -10.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.87 -8.25 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.429 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds