Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35454 * 128.01065 * 2 1 4 4 O 1.34035 * 106.44500 * 179.97438 * 3 2 1 5 5 N 1.20922 * 111.57153 * 359.71228 * 4 3 2 6 6 C 1.30173 * 111.60251 * 0.47811 * 5 4 3 7 7 C 1.50695 * 126.80231 * 179.79559 * 6 5 4 8 8 N 1.46901 * 109.47486 * 269.69083 * 7 6 5 9 9 C 1.47445 * 110.99908 * 63.78483 * 8 7 6 10 10 C 1.54310 * 107.37399 * 236.66331 * 9 8 7 11 11 C 1.55402 * 102.89851 * 337.89453 * 10 9 8 12 12 C 1.47846 * 110.99870 * 302.94636 * 8 7 6 13 13 H 1.09000 * 110.37564 * 27.53249 * 12 8 7 14 14 C 1.52998 * 110.37238 * 265.18991 * 12 8 7 15 15 N 1.46496 * 109.47294 * 59.84852 * 14 12 8 16 16 C 1.34778 * 120.00522 * 185.75105 * 15 14 12 17 17 O 1.21286 * 119.99417 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00425 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47376 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00283 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00122 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00186 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99912 * 179.97438 * 22 20 19 25 25 H 1.48489 * 109.47450 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47219 * 119.99987 * 24 22 20 27 27 H 1.48506 * 109.46888 * 239.99462 * 24 22 20 28 28 H 1.08995 * 109.47680 * 270.04592 * 1 2 3 29 29 H 1.09003 * 109.46958 * 30.04827 * 1 2 3 30 30 H 1.08999 * 109.47234 * 150.03838 * 1 2 3 31 31 H 1.08003 * 126.77088 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47118 * 149.69125 * 7 6 5 33 33 H 1.08996 * 109.47060 * 29.69197 * 7 6 5 34 34 H 1.09007 * 109.88530 * 356.15098 * 9 8 7 35 35 H 1.08995 * 109.88624 * 117.17170 * 9 8 7 36 36 H 1.09004 * 110.70706 * 96.17692 * 10 9 8 37 37 H 1.09002 * 110.70902 * 219.41486 * 10 9 8 38 38 H 1.09001 * 110.87237 * 277.38999 * 11 10 9 39 39 H 1.09006 * 111.02451 * 153.63277 * 11 10 9 40 40 H 1.09003 * 109.47220 * 179.85449 * 14 12 8 41 41 H 1.09003 * 109.47434 * 299.84903 * 14 12 8 42 42 H 0.97003 * 119.99975 * 5.75266 * 15 14 12 43 43 H 1.09004 * 109.47217 * 299.99481 * 18 16 15 44 44 H 1.08998 * 109.47221 * 59.99971 * 18 16 15 45 45 H 0.97002 * 119.99484 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5876 0.5746 0.0006 5 7 3.5878 -0.6346 0.0066 6 6 2.3775 -1.1141 0.0006 7 6 1.9826 -2.5683 0.0008 8 7 1.8547 -3.0413 -1.3841 9 6 3.1508 -2.9818 -2.0845 10 6 2.9556 -2.1082 -3.3415 11 6 1.4225 -2.1861 -3.5834 12 6 0.8764 -2.2254 -2.1343 13 1 0.8254 -1.2183 -1.7205 14 6 -0.5034 -2.8858 -2.1029 15 7 -0.9510 -3.0160 -0.7141 16 6 -2.0917 -3.6764 -0.4327 17 8 -2.7479 -4.1625 -1.3295 18 6 -2.5524 -3.8097 0.9958 19 16 -4.1030 -4.7421 1.0452 20 6 -4.4027 -4.7459 2.7815 21 1 -3.7088 -4.2585 3.4503 22 6 -5.5300 -5.3761 3.2898 23 7 -6.3756 -5.9706 2.4747 24 14 -5.8473 -5.3807 5.1307 25 1 -4.7554 -4.6504 5.8230 26 1 -7.1445 -4.7144 5.4111 27 1 -5.8942 -6.7816 5.6214 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8903 -0.5132 31 1 2.0576 2.1094 -0.0004 32 1 1.0284 -2.6856 0.5143 33 1 2.7461 -3.1521 0.5150 34 1 3.9031 -2.5342 -1.4350 35 1 3.4617 -3.9853 -2.3750 36 1 3.2631 -1.0804 -3.1481 37 1 3.5034 -2.5227 -4.1878 38 1 1.1604 -3.0954 -4.1244 39 1 1.0646 -1.3023 -4.1117 40 1 -1.2129 -2.2717 -2.6574 41 1 -0.4438 -3.8738 -2.5595 42 1 -0.4264 -2.6268 0.0030 43 1 -1.7937 -4.3364 1.5747 44 1 -2.7105 -2.8185 1.4206 45 1 -7.1636 -6.4107 2.8299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713501484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = 17.727518 kcal Electronic energy + Delta-G solvation = -27808.208506 eV Core-core repulsion = 23954.820314 eV Total energy + Delta-G solvation = -3853.388192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.00297 -41.20294 -40.01411 -36.13626 -35.78644 -34.56595 -33.88557 -32.33058 -31.95038 -30.01913 -29.09151 -27.69304 -27.51749 -25.63464 -22.90259 -22.70825 -22.28916 -21.51245 -20.92003 -19.79338 -18.80124 -18.52840 -17.77946 -17.61162 -17.06377 -16.86376 -16.50771 -16.22054 -15.93050 -15.70951 -15.29729 -14.94824 -14.58975 -14.49075 -14.40400 -14.18345 -14.04195 -13.76721 -13.65221 -13.25510 -13.13849 -13.13183 -12.89985 -12.63073 -12.59429 -12.38393 -12.28379 -12.19470 -11.92621 -11.68755 -11.58952 -11.14335 -11.07199 -10.91056 -10.30368 -10.24767 -10.07538 -9.56281 -8.64028 -8.33143 -6.10499 0.54169 1.12112 1.28494 1.42311 1.48341 1.59215 1.64395 2.24829 2.29872 2.37953 2.78710 3.01145 3.07408 3.32449 3.42371 3.55985 3.65177 3.80866 3.97755 4.01665 4.08602 4.14365 4.17410 4.29968 4.36450 4.50107 4.50798 4.51675 4.59808 4.68621 4.71328 4.75815 4.79847 4.84534 4.86417 4.91649 4.98977 5.07853 5.24132 5.27334 5.42966 5.44111 5.81211 5.85568 6.21791 6.44253 7.08500 7.23831 7.26981 8.76229 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.002735 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.867273 B =10233.818192 C =11244.194614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.207 4.207 3 C -0.046 4.046 4 O 0.092 5.908 5 N -0.377 5.377 6 C -0.025 4.025 7 C 0.121 3.879 8 N -0.515 5.515 9 C 0.036 3.964 10 C -0.129 4.129 11 C -0.118 4.118 12 C 0.046 3.954 13 H 0.090 0.910 14 C 0.137 3.863 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.275 1.275 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.405 0.595 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.146 17.435 -7.822 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.212 4.212 3 C -0.127 4.127 4 O 0.027 5.973 5 N -0.082 5.082 6 C -0.186 4.186 7 C -0.008 4.008 8 N -0.239 5.239 9 C -0.092 4.092 10 C -0.168 4.168 11 C -0.156 4.156 12 C -0.062 4.062 13 H 0.108 0.892 14 C 0.013 3.987 15 N -0.367 5.367 16 C 0.320 3.680 17 O -0.440 6.440 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.272 0.728 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.998 15.451 -9.303 28.446 hybrid contribution 0.012 1.271 2.330 2.654 sum 22.010 16.722 -6.973 28.507 Atomic orbital electron populations 1.20556 0.86582 1.04556 1.03967 1.21540 0.99160 0.91532 1.08930 1.26521 0.81718 1.02603 1.01846 1.84785 1.30359 1.15192 1.67006 1.73872 1.22859 0.92049 1.19441 1.24480 0.89235 1.00305 1.04547 1.20989 1.02497 0.85412 0.91935 1.63830 1.08169 1.50809 1.01078 1.22905 0.90230 1.00815 0.95222 1.22711 0.96360 0.99544 0.98157 1.22743 0.94796 1.03841 0.94248 1.23211 0.90745 0.96508 0.95768 0.89202 1.21401 0.93949 1.01144 0.82192 1.46111 1.23811 1.56785 1.10041 1.20045 0.80837 0.77259 0.89881 1.90693 1.56128 1.48321 1.48872 1.23389 1.02499 1.05632 0.96791 1.85575 1.24372 1.70993 1.10992 1.23240 1.12378 1.41577 0.92113 0.89938 1.26108 0.94597 0.93859 1.04554 1.70191 1.12750 1.34487 1.37313 0.84920 0.78572 0.78276 0.76267 1.18032 1.19885 1.20088 0.89864 0.88573 0.91223 0.72815 0.88732 0.88750 0.92407 0.89984 0.92213 0.89109 0.90070 0.88900 0.90788 0.92154 0.75444 0.87660 0.87056 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.63 71.24 0.69 -0.48 16 2 C -0.21 -2.80 5.18 -19.73 -0.10 -2.90 16 3 C -0.05 -0.47 12.26 67.18 0.82 0.36 16 4 O 0.09 1.47 11.20 71.68 0.80 2.27 16 5 N -0.38 -7.37 11.07 -49.56 -0.55 -7.92 16 6 C -0.03 -0.45 5.18 43.58 0.23 -0.22 16 7 C 0.12 2.22 5.51 85.56 0.47 2.69 16 8 N -0.52 -9.67 4.99 -865.20 -4.31 -13.98 16 9 C 0.04 0.61 6.42 86.64 0.56 1.16 16 10 C -0.13 -1.78 6.97 31.86 0.22 -1.56 16 11 C -0.12 -1.65 6.50 32.07 0.21 -1.45 16 12 C 0.05 0.78 2.12 45.38 0.10 0.88 16 13 H 0.09 1.41 3.24 -2.39 -0.01 1.40 16 14 C 0.14 3.11 5.01 86.38 0.43 3.55 16 15 N -0.71 -18.21 4.46 -463.07 -2.07 -20.28 16 16 C 0.53 19.61 7.85 87.65 0.69 20.30 16 17 O -0.56 -25.89 15.85 -3.05 -0.05 -25.93 16 18 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 19 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 20 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 24 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.01 3.09 -2.39 -0.01 1.00 16 31 H 0.26 0.17 8.06 -2.91 -0.02 0.15 16 32 H 0.09 1.68 5.23 -2.39 -0.01 1.67 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.09 6.25 -2.38 -0.01 1.07 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 39 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 42 H 0.40 8.44 3.82 -92.71 -0.35 8.08 16 43 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.70 369.40 1.51 -76.19 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.67 Total: 20.44 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 5.86 Total: -11.48 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -6.64 Total: -97.66 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.75 Total: -23.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -77.70 1.51 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.915 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds