Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.80091 * 2 1 4 4 O 1.20925 * 111.60673 * 180.02562 * 3 2 1 5 5 C 1.34045 * 111.56308 * 359.76942 * 4 3 2 6 6 C 1.35452 * 106.44638 * 0.37379 * 5 4 3 7 7 C 1.50703 * 128.00582 * 179.91200 * 6 5 4 8 8 N 1.46904 * 109.47157 * 259.68050 * 7 6 5 9 9 C 1.48536 * 110.99942 * 56.01878 * 8 7 6 10 10 C 1.54939 * 103.22578 * 159.71888 * 9 8 7 11 11 C 1.54589 * 102.92144 * 322.58577 * 10 9 8 12 12 C 1.47903 * 110.99533 * 173.41075 * 8 7 6 13 13 H 1.08992 * 110.08796 * 333.60327 * 12 8 7 14 14 C 1.53007 * 109.91336 * 94.80644 * 12 8 7 15 15 N 1.46495 * 109.47067 * 296.94761 * 14 12 8 16 16 C 1.34777 * 119.99847 * 173.77739 * 15 14 12 17 17 O 1.21278 * 120.00039 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99599 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46713 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99803 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00255 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00060 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99365 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47451 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46980 * 120.00283 * 24 22 20 27 27 H 1.48504 * 109.47062 * 239.99811 * 24 22 20 28 28 H 1.09000 * 109.46727 * 269.97069 * 1 2 3 29 29 H 1.09000 * 109.47210 * 29.97362 * 1 2 3 30 30 H 1.09005 * 109.46539 * 149.97120 * 1 2 3 31 31 H 1.08001 * 126.77884 * 180.28529 * 5 4 3 32 32 H 1.09002 * 109.46935 * 139.68226 * 7 6 5 33 33 H 1.09008 * 109.47001 * 19.68183 * 7 6 5 34 34 H 1.09001 * 110.66727 * 41.28267 * 9 8 7 35 35 H 1.09005 * 110.80958 * 278.22280 * 9 8 7 36 36 H 1.08995 * 110.71974 * 204.22494 * 10 9 8 37 37 H 1.08999 * 110.87131 * 81.01579 * 10 9 8 38 38 H 1.09006 * 110.30687 * 263.04262 * 11 10 9 39 39 H 1.08997 * 110.31097 * 140.87224 * 11 10 9 40 40 H 1.08998 * 109.46569 * 176.94216 * 14 12 8 41 41 H 1.08999 * 109.46878 * 56.94660 * 14 12 8 42 42 H 0.97000 * 119.99867 * 353.78253 * 15 14 12 43 43 H 1.08994 * 109.47098 * 60.00630 * 18 16 15 44 44 H 1.09000 * 109.47376 * 299.99977 * 18 16 15 45 45 H 0.97005 * 119.99345 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 2.3540 -1.1320 -0.0007 7 6 1.9591 -2.5864 -0.0003 8 7 1.5975 -2.9960 -1.3640 9 6 2.7071 -2.7241 -2.3133 10 6 2.3880 -3.6576 -3.5081 11 6 1.8354 -4.9258 -2.8180 12 6 1.3558 -4.4535 -1.4330 13 1 1.9184 -4.9637 -0.6513 14 6 -0.1382 -4.7422 -1.2724 15 7 -0.5807 -4.3031 0.0533 16 6 -1.8891 -4.3420 0.3741 17 8 -2.7002 -4.7409 -0.4346 18 6 -2.3442 -3.8909 1.7381 19 16 -4.1418 -4.0628 1.8617 20 6 -4.3921 -3.4834 3.5068 21 1 -3.5491 -3.1610 4.1000 22 6 -5.6729 -3.4403 4.0401 23 7 -6.7004 -3.8327 3.3169 24 14 -5.9383 -2.8254 5.7839 25 1 -4.6318 -2.4471 6.3797 26 1 -6.8336 -1.6409 5.7601 27 1 -6.5607 -3.8999 6.5983 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3632 -0.8898 -0.5143 31 1 4.5339 -1.1534 0.0091 32 1 1.1048 -2.7307 0.6610 33 1 2.7963 -3.1901 0.3505 34 1 3.6672 -2.9842 -1.8676 35 1 2.7006 -1.6805 -2.6280 36 1 3.2931 -3.8876 -4.0702 37 1 1.6346 -3.2127 -4.1581 38 1 2.6228 -5.6720 -2.7115 39 1 1.0011 -5.3338 -3.3885 40 1 -0.3148 -5.8125 -1.3786 41 1 -0.6966 -4.2041 -2.0385 42 1 0.0681 -3.9844 0.7002 43 1 -2.0676 -2.8471 1.8866 44 1 -1.8675 -4.5054 2.5018 45 1 -7.5955 -3.8022 3.6895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713501716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = 30.623625 kcal Electronic energy + Delta-G solvation = -27284.236761 eV Core-core repulsion = 23431.407786 eV Total energy + Delta-G solvation = -3852.828975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.15939 -40.06164 -38.69327 -35.56544 -34.40209 -33.22639 -32.42100 -31.22767 -30.70695 -28.79860 -28.69485 -26.66072 -25.52332 -24.63677 -22.28289 -21.56276 -21.07638 -20.87348 -20.01243 -17.88384 -17.78720 -17.63048 -16.72522 -16.41776 -16.00518 -15.60276 -15.04463 -14.96176 -14.79771 -14.39457 -14.33547 -13.89829 -13.47417 -13.33065 -13.23764 -13.11184 -12.81782 -12.68185 -12.56989 -12.53302 -12.09891 -11.85450 -11.69505 -11.56129 -11.42125 -11.24292 -11.06725 -11.01049 -10.93066 -10.74626 -10.02434 -9.79846 -9.77979 -9.36588 -9.07047 -8.85742 -8.79522 -8.21723 -6.48704 -6.21228 -3.91294 1.21058 1.96687 2.98435 3.05163 3.14561 3.21894 3.28887 3.33465 3.54122 3.71432 3.96944 4.20958 4.23897 4.27761 4.30961 4.47557 4.58046 4.76081 4.81307 4.89608 5.07541 5.11598 5.14120 5.15010 5.25351 5.32335 5.35894 5.44422 5.47454 5.51717 5.59400 5.63338 5.66843 5.70323 5.71579 5.79968 5.89598 5.98064 6.08615 6.14297 6.43582 6.59085 6.67342 7.60413 7.71618 8.07321 8.35942 8.65281 9.24396 10.86209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002969 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.879698 B = 9429.591398 C =11315.197987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.044 3.956 3 N -0.370 5.370 4 O 0.096 5.904 5 C -0.059 4.059 6 C -0.193 4.193 7 C 0.120 3.880 8 N -0.502 5.502 9 C 0.038 3.962 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.054 3.946 13 H 0.061 0.939 14 C 0.137 3.863 15 N -0.736 5.736 16 C 0.531 3.469 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.211 0.789 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.391 0.609 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.631 1.384 -10.385 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 N -0.076 5.076 4 O 0.033 5.967 5 C -0.141 4.141 6 C -0.197 4.197 7 C -0.008 4.008 8 N -0.227 5.227 9 C -0.089 4.089 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.054 4.054 13 H 0.079 0.921 14 C 0.013 3.987 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.228 0.772 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.227 0.773 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.390 2.297 -11.879 26.334 hybrid contribution 1.858 -0.281 2.724 3.310 sum 25.248 2.016 -9.155 26.932 Atomic orbital electron populations 1.20261 0.85383 1.04539 1.03766 1.23572 0.99274 0.87823 1.00893 1.73886 0.89303 1.24199 1.20207 1.84836 1.21807 1.22661 1.67437 1.25755 1.00406 0.84121 1.03866 1.21031 0.92221 0.97105 1.09375 1.20593 1.00188 0.88667 0.91334 1.64791 1.38237 1.14328 1.05361 1.23196 0.92292 1.00521 0.92907 1.22472 1.01233 0.95148 0.97245 1.22367 1.01324 0.97901 0.94544 1.22689 0.96426 0.88124 0.98189 0.92131 1.21350 0.92303 0.99395 0.85698 1.46134 1.08224 1.68839 1.16039 1.20266 0.81534 0.77323 0.89131 1.90702 1.52551 1.44970 1.50908 1.23531 1.07183 1.03889 0.95830 1.85409 0.93152 1.85436 1.19222 1.22909 0.95912 1.50037 0.99450 0.90939 1.24988 0.94966 0.95000 0.98620 1.70032 0.99161 1.44459 1.36595 0.86132 0.78357 0.78505 0.82598 1.19639 1.20559 1.20586 0.89959 0.90614 0.88942 0.77206 0.89011 0.93050 0.93790 0.90190 0.90960 0.90443 0.90998 0.90092 0.91553 0.90434 0.77276 0.89374 0.89452 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.39 36.01 0.37 -0.54 16 2 C 0.04 0.50 7.33 -82.10 -0.60 -0.11 16 3 N -0.37 -4.57 12.07 33.43 0.40 -4.17 16 4 O 0.10 0.98 11.20 17.16 0.19 1.17 16 5 C -0.06 -0.42 12.09 29.74 0.36 -0.06 16 6 C -0.19 -1.70 4.75 -104.42 -0.50 -2.19 16 7 C 0.12 0.92 5.06 -4.97 -0.03 0.89 16 8 N -0.50 -4.07 4.94 -223.98 -1.11 -5.17 16 9 C 0.04 0.26 5.53 -1.89 -0.01 0.25 16 10 C -0.12 -0.75 7.06 -24.87 -0.18 -0.93 16 11 C -0.12 -0.77 6.57 -25.38 -0.17 -0.94 16 12 C 0.05 0.42 2.70 -66.64 -0.18 0.24 16 13 H 0.06 0.41 7.64 -51.93 -0.40 0.02 16 14 C 0.14 1.51 5.12 -4.04 -0.02 1.49 16 15 N -0.74 -9.42 5.32 -60.29 -0.32 -9.74 16 16 C 0.53 9.69 7.85 -10.98 -0.09 9.60 16 17 O -0.52 -11.60 15.85 5.56 0.09 -11.51 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 20 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.21 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.09 0.77 5.52 -51.93 -0.29 0.48 16 33 H 0.05 0.30 7.92 -51.92 -0.41 -0.11 16 34 H 0.04 0.24 8.02 -51.93 -0.42 -0.17 16 35 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 42 H 0.39 4.04 5.61 -40.82 -0.23 3.81 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -35.37 385.52 -8.79 -44.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.74 Total: 0.22 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.61 Total: -7.97 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.29 Total: -44.45 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.28 Total: -10.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.37 -8.79 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.781 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds