Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.80091 * 2 1 4 4 O 1.20925 * 111.60673 * 180.02562 * 3 2 1 5 5 C 1.34045 * 111.56308 * 359.76942 * 4 3 2 6 6 C 1.35452 * 106.44638 * 0.37379 * 5 4 3 7 7 C 1.50703 * 128.00582 * 179.91200 * 6 5 4 8 8 N 1.46904 * 109.47157 * 259.68050 * 7 6 5 9 9 C 1.48536 * 110.99942 * 56.01878 * 8 7 6 10 10 C 1.54939 * 103.22578 * 159.71888 * 9 8 7 11 11 C 1.54589 * 102.92144 * 322.58577 * 10 9 8 12 12 C 1.47903 * 110.99533 * 173.41075 * 8 7 6 13 13 H 1.08992 * 110.08796 * 333.60327 * 12 8 7 14 14 C 1.53007 * 109.91336 * 94.80644 * 12 8 7 15 15 N 1.46495 * 109.47067 * 296.94761 * 14 12 8 16 16 C 1.34777 * 119.99847 * 173.77739 * 15 14 12 17 17 O 1.21278 * 120.00039 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99599 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46713 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99803 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00255 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00060 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99365 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47451 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46980 * 120.00283 * 24 22 20 27 27 H 1.48504 * 109.47062 * 239.99811 * 24 22 20 28 28 H 1.09000 * 109.46727 * 269.97069 * 1 2 3 29 29 H 1.09000 * 109.47210 * 29.97362 * 1 2 3 30 30 H 1.09005 * 109.46539 * 149.97120 * 1 2 3 31 31 H 1.08001 * 126.77884 * 180.28529 * 5 4 3 32 32 H 1.09002 * 109.46935 * 139.68226 * 7 6 5 33 33 H 1.09008 * 109.47001 * 19.68183 * 7 6 5 34 34 H 1.09001 * 110.66727 * 41.28267 * 9 8 7 35 35 H 1.09005 * 110.80958 * 278.22280 * 9 8 7 36 36 H 1.08995 * 110.71974 * 204.22494 * 10 9 8 37 37 H 1.08999 * 110.87131 * 81.01579 * 10 9 8 38 38 H 1.09006 * 110.30687 * 263.04262 * 11 10 9 39 39 H 1.08997 * 110.31097 * 140.87224 * 11 10 9 40 40 H 1.08998 * 109.46569 * 176.94216 * 14 12 8 41 41 H 1.08999 * 109.46878 * 56.94660 * 14 12 8 42 42 H 0.97000 * 119.99867 * 353.78253 * 15 14 12 43 43 H 1.08994 * 109.47098 * 60.00630 * 18 16 15 44 44 H 1.09000 * 109.47376 * 299.99977 * 18 16 15 45 45 H 0.97005 * 119.99345 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 2.3540 -1.1320 -0.0007 7 6 1.9591 -2.5864 -0.0003 8 7 1.5975 -2.9960 -1.3640 9 6 2.7071 -2.7241 -2.3133 10 6 2.3880 -3.6576 -3.5081 11 6 1.8354 -4.9258 -2.8180 12 6 1.3558 -4.4535 -1.4330 13 1 1.9184 -4.9637 -0.6513 14 6 -0.1382 -4.7422 -1.2724 15 7 -0.5807 -4.3031 0.0533 16 6 -1.8891 -4.3420 0.3741 17 8 -2.7002 -4.7409 -0.4346 18 6 -2.3442 -3.8909 1.7381 19 16 -4.1418 -4.0628 1.8617 20 6 -4.3921 -3.4834 3.5068 21 1 -3.5491 -3.1610 4.1000 22 6 -5.6729 -3.4403 4.0401 23 7 -6.7004 -3.8327 3.3169 24 14 -5.9383 -2.8254 5.7839 25 1 -4.6318 -2.4471 6.3797 26 1 -6.8336 -1.6409 5.7601 27 1 -6.5607 -3.8999 6.5983 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3632 -0.8898 -0.5143 31 1 4.5339 -1.1534 0.0091 32 1 1.1048 -2.7307 0.6610 33 1 2.7963 -3.1901 0.3505 34 1 3.6672 -2.9842 -1.8676 35 1 2.7006 -1.6805 -2.6280 36 1 3.2931 -3.8876 -4.0702 37 1 1.6346 -3.2127 -4.1581 38 1 2.6228 -5.6720 -2.7115 39 1 1.0011 -5.3338 -3.3885 40 1 -0.3148 -5.8125 -1.3786 41 1 -0.6966 -4.2041 -2.0385 42 1 0.0681 -3.9844 0.7002 43 1 -2.0676 -2.8471 1.8866 44 1 -1.8675 -4.5054 2.5018 45 1 -7.5955 -3.8022 3.6895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713501716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = 5.129052 kcal Electronic energy + Delta-G solvation = -27285.342289 eV Core-core repulsion = 23431.407786 eV Total energy + Delta-G solvation = -3853.934502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.92037 -40.95405 -39.85327 -36.28946 -35.57944 -34.57412 -33.91398 -31.90535 -31.80544 -29.93017 -29.60052 -27.67865 -27.24613 -25.54749 -22.99233 -22.24853 -21.85773 -21.64146 -21.08664 -19.76769 -18.59609 -18.33233 -17.80001 -17.57589 -16.96829 -16.87495 -16.53700 -16.10531 -15.95867 -15.56462 -15.22993 -14.92500 -14.64545 -14.39977 -14.27961 -14.10624 -13.91820 -13.79396 -13.41723 -13.25009 -13.15301 -13.14266 -12.91143 -12.70389 -12.62169 -12.37608 -12.20685 -12.01515 -11.93505 -11.69990 -11.43653 -11.15242 -10.90634 -10.79683 -10.43534 -10.25038 -10.04555 -9.36666 -8.64678 -8.34078 -6.11265 0.59306 1.20184 1.28340 1.41095 1.47983 1.58822 1.66979 2.26713 2.33860 2.43204 2.95638 3.00212 3.24499 3.33434 3.61279 3.66533 3.73197 3.83717 4.03380 4.06952 4.14849 4.27186 4.29882 4.33967 4.50917 4.52926 4.56188 4.60089 4.62181 4.65093 4.71834 4.80225 4.85736 4.93433 4.99451 5.02013 5.10128 5.21200 5.25777 5.32641 5.42936 5.49518 5.92988 6.04095 6.20812 6.51575 7.07616 7.28667 7.37554 8.75309 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002969 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.879698 B = 9429.591398 C =11315.197987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 N -0.404 5.404 4 O 0.090 5.910 5 C -0.036 4.036 6 C -0.203 4.203 7 C 0.122 3.878 8 N -0.524 5.524 9 C 0.043 3.957 10 C -0.121 4.121 11 C -0.120 4.120 12 C 0.064 3.936 13 H 0.082 0.918 14 C 0.136 3.864 15 N -0.708 5.708 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.149 6.149 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.408 0.592 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.345 0.955 -9.229 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.112 5.112 4 O 0.027 5.973 5 C -0.118 4.118 6 C -0.207 4.207 7 C -0.006 4.006 8 N -0.249 5.249 9 C -0.085 4.085 10 C -0.159 4.159 11 C -0.158 4.158 12 C -0.044 4.044 13 H 0.100 0.900 14 C 0.012 3.988 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.274 0.726 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 27.170 1.881 -10.724 29.270 hybrid contribution 0.840 -0.147 2.263 2.418 sum 28.010 1.734 -8.461 29.311 Atomic orbital electron populations 1.20153 0.86173 1.03805 1.03379 1.23732 0.99255 0.89024 1.01621 1.73882 0.90228 1.25287 1.21805 1.84788 1.20857 1.24366 1.67259 1.26561 1.01554 0.82786 1.00860 1.21168 0.92317 0.97101 1.10111 1.20608 1.00812 0.88263 0.90870 1.64683 1.39673 1.14507 1.06063 1.23169 0.92787 0.99764 0.92733 1.22462 1.01565 0.94825 0.97049 1.22374 1.01665 0.98370 0.93397 1.22602 0.93639 0.88348 0.99852 0.89970 1.21508 0.94731 0.98979 0.83601 1.45899 1.06456 1.66842 1.17141 1.20022 0.82926 0.77119 0.88050 1.90690 1.54276 1.47569 1.51962 1.23370 1.01441 1.05560 0.97713 1.85586 1.00570 1.85936 1.20072 1.23232 0.96587 1.49926 0.99494 0.90002 1.26102 0.94549 0.94945 1.03501 1.70193 0.99773 1.45834 1.38940 0.84933 0.78810 0.77907 0.76475 1.18060 1.20044 1.19895 0.90172 0.91295 0.89690 0.72568 0.90167 0.90066 0.91395 0.91701 0.89058 0.92187 0.88779 0.90959 0.91513 0.92801 0.75340 0.87555 0.87376 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.39 71.24 0.74 -1.04 16 2 C 0.02 0.49 7.33 43.58 0.32 0.81 16 3 N -0.40 -9.84 12.07 -49.54 -0.60 -10.44 16 4 O 0.09 1.68 11.20 71.59 0.80 2.48 16 5 C -0.04 -0.39 12.09 67.18 0.81 0.42 16 6 C -0.20 -3.08 4.75 -19.73 -0.09 -3.17 16 7 C 0.12 1.47 5.06 85.56 0.43 1.91 16 8 N -0.52 -7.19 4.94 -862.55 -4.26 -11.45 16 9 C 0.04 0.44 5.53 86.65 0.48 0.92 16 10 C -0.12 -1.18 7.06 31.80 0.22 -0.95 16 11 C -0.12 -1.17 6.57 31.47 0.21 -0.96 16 12 C 0.06 0.81 2.70 45.06 0.12 0.93 16 13 H 0.08 0.74 7.64 -2.39 -0.02 0.72 16 14 C 0.14 2.86 5.12 86.38 0.44 3.30 16 15 N -0.71 -17.22 5.32 -463.06 -2.46 -19.68 16 16 C 0.53 19.44 7.85 87.66 0.69 20.12 16 17 O -0.57 -26.24 15.85 -3.02 -0.05 -26.29 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.25 20.57 -56.49 -1.16 -9.42 16 20 C -0.54 -31.07 9.50 67.96 0.65 -30.42 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 24 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.26 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.08 1.13 5.52 -2.39 -0.01 1.11 16 33 H 0.08 0.52 7.92 -2.38 -0.02 0.50 16 34 H 0.07 0.40 8.02 -2.39 -0.02 0.38 16 35 H 0.06 0.89 7.93 -2.38 -0.02 0.87 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.07 0.85 7.69 -2.39 -0.02 0.83 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 42 H 0.41 7.42 5.61 -92.71 -0.52 6.90 16 43 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 44 H 0.11 3.79 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -81.24 385.52 0.99 -80.25 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.48 Total: 16.10 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.92 Total: -11.53 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -7.04 Total: -97.37 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.75 Total: -23.81 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.42 kcal Total: -81.24 0.99 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.382 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds