Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30170 * 126.79630 * 2 1 4 4 O 1.20920 * 111.60381 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56663 * 359.76462 * 4 3 2 6 6 C 1.35447 * 106.44409 * 0.37860 * 5 4 3 7 7 C 1.50702 * 128.00620 * 179.90989 * 6 5 4 8 8 N 1.46897 * 109.47133 * 267.93371 * 7 6 5 9 9 C 1.48559 * 111.00088 * 49.46114 * 8 7 6 10 10 C 1.54381 * 104.59729 * 200.95668 * 9 8 7 11 11 C 1.54263 * 105.05688 * 23.85390 * 10 9 8 12 12 C 1.48568 * 111.00270 * 294.04285 * 8 7 6 13 13 H 1.08994 * 110.50950 * 40.21123 * 12 8 7 14 14 C 1.53003 * 110.40826 * 277.81720 * 12 8 7 15 15 N 1.46500 * 109.46875 * 68.37756 * 14 12 8 16 16 C 1.34779 * 119.99935 * 186.64382 * 15 14 12 17 17 O 1.21276 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99955 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.46899 * 179.97438 * 18 16 15 20 20 C 1.76192 * 99.99908 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00281 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99944 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99786 * 0.27365 * 22 20 19 25 25 H 1.48497 * 109.47388 * 269.72867 * 24 22 20 26 26 H 1.48506 * 109.47059 * 29.72802 * 24 22 20 27 27 H 1.48492 * 109.47069 * 149.72634 * 24 22 20 28 28 H 1.09008 * 109.47020 * 264.28456 * 1 2 3 29 29 H 1.09000 * 109.48035 * 24.28943 * 1 2 3 30 30 H 1.09010 * 109.47051 * 144.29403 * 1 2 3 31 31 H 1.08000 * 126.77668 * 180.28812 * 5 4 3 32 32 H 1.08997 * 109.46807 * 147.93469 * 7 6 5 33 33 H 1.08995 * 109.46929 * 27.93254 * 7 6 5 34 34 H 1.09000 * 110.41200 * 82.18096 * 9 8 7 35 35 H 1.09000 * 110.51420 * 319.78989 * 9 8 7 36 36 H 1.08991 * 110.32417 * 264.95415 * 10 9 8 37 37 H 1.09007 * 110.40785 * 142.79105 * 10 9 8 38 38 H 1.09000 * 110.32188 * 241.10151 * 11 10 9 39 39 H 1.09006 * 110.32280 * 118.89446 * 11 10 9 40 40 H 1.08996 * 109.47148 * 308.37609 * 14 12 8 41 41 H 1.09001 * 109.46893 * 188.37091 * 14 12 8 42 42 H 0.96998 * 120.00341 * 6.63935 * 15 14 12 43 43 H 1.08998 * 109.47104 * 59.99995 * 18 16 15 44 44 H 1.08991 * 109.47226 * 299.99344 * 18 16 15 45 45 H 0.97006 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4536 0.7255 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 2.3540 -1.1320 0.0006 7 6 1.9592 -2.5864 0.0015 8 7 1.7900 -3.0487 -1.3825 9 6 2.9591 -2.6698 -2.2171 10 6 2.4330 -2.7161 -3.6678 11 6 0.9078 -2.5182 -3.5474 12 6 0.6408 -2.3690 -2.0342 13 1 0.6119 -1.3158 -1.7553 14 6 -0.6717 -3.0570 -1.6536 15 7 -0.9473 -2.8310 -0.2326 16 6 -1.9839 -3.4558 0.3604 17 8 -2.6887 -4.2046 -0.2824 18 6 -2.2671 -3.2237 1.8223 19 16 -3.7113 -4.1954 2.3187 20 6 -3.8113 -3.7475 4.0198 21 1 -3.0938 -3.0583 4.4399 22 6 -4.8123 -4.2806 4.8201 23 7 -4.8873 -3.9457 6.0908 24 14 -6.0487 -5.4787 4.0955 25 1 -7.2181 -4.7275 3.5726 26 1 -5.4126 -6.2375 2.9886 27 1 -6.4983 -6.4237 5.1490 28 1 -0.3633 -0.1024 1.0226 29 1 -0.3635 0.9366 -0.4227 30 1 -0.3634 -0.8346 -0.5998 31 1 4.5339 -1.1532 0.0120 32 1 1.0207 -2.7077 0.5424 33 1 2.7377 -3.1738 0.4881 34 1 3.7696 -3.3864 -2.0838 35 1 3.2970 -1.6641 -1.9672 36 1 2.6548 -3.6824 -4.1203 37 1 2.8736 -1.9123 -4.2577 38 1 0.3811 -3.3875 -3.9409 39 1 0.6001 -1.6164 -4.0768 40 1 -0.5888 -4.1274 -1.8419 41 1 -1.4846 -2.6448 -2.2514 42 1 -0.3838 -2.2319 0.2814 43 1 -2.4664 -2.1654 1.9902 44 1 -1.4032 -3.5289 2.4126 45 1 -5.5870 -4.3180 6.6501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713501718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = 51.426366 kcal Electronic energy + Delta-G solvation = -27932.458206 eV Core-core repulsion = 24080.531306 eV Total energy + Delta-G solvation = -3851.926900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.38041 -40.43457 -38.86828 -35.58444 -34.77165 -33.39047 -32.44805 -31.24714 -30.87097 -29.16174 -28.83588 -26.75418 -25.64802 -24.70494 -22.60041 -21.92930 -21.25860 -20.68068 -20.04387 -18.15316 -18.04173 -17.63415 -16.90490 -16.48833 -16.07106 -15.75722 -15.28649 -15.02457 -14.94755 -14.72452 -14.37945 -13.84682 -13.77650 -13.60933 -13.29471 -13.11301 -12.97242 -12.83609 -12.76022 -12.58210 -12.21612 -11.95378 -11.78617 -11.68697 -11.52776 -11.26934 -11.10370 -11.01473 -10.84143 -10.61227 -10.26262 -9.86644 -9.83925 -9.53990 -9.02717 -9.00070 -8.96294 -8.51363 -6.92840 -6.29752 -4.01596 1.07139 1.75752 2.73346 2.84618 2.94308 3.27225 3.33090 3.50203 3.53394 3.61649 3.75471 4.06897 4.22857 4.27442 4.32461 4.38420 4.57377 4.63879 4.69351 4.78522 4.82080 5.01330 5.09336 5.10272 5.12337 5.16259 5.22373 5.27426 5.28800 5.33155 5.40979 5.47712 5.48781 5.55319 5.66819 5.72662 5.73700 5.76403 5.90364 5.96624 6.37526 6.46370 6.52643 7.48900 7.88672 7.93201 8.40585 8.44429 9.16430 10.79477 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002917 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.650838 B = 9594.995001 C =10725.470288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.025 3.975 3 N -0.360 5.360 4 O 0.100 5.900 5 C -0.045 4.045 6 C -0.237 4.237 7 C 0.104 3.896 8 N -0.486 5.486 9 C 0.022 3.978 10 C -0.122 4.122 11 C -0.117 4.117 12 C 0.031 3.969 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.744 5.744 16 C 0.529 3.471 17 O -0.514 6.514 18 C -0.127 4.127 19 S -0.138 6.138 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.274 1.274 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.396 0.604 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.151 6.447 -18.387 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 N -0.065 5.065 4 O 0.035 5.965 5 C -0.128 4.128 6 C -0.243 4.243 7 C -0.025 4.025 8 N -0.208 5.208 9 C -0.106 4.106 10 C -0.160 4.160 11 C -0.155 4.155 12 C -0.078 4.078 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.405 5.405 16 C 0.315 3.685 17 O -0.388 6.388 18 C -0.278 4.278 19 S 0.088 5.912 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.158 1.158 27 H -0.199 1.199 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.237 0.763 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.581 5.902 -19.249 27.397 hybrid contribution 0.685 0.801 1.147 1.558 sum 19.266 6.703 -18.101 27.272 Atomic orbital electron populations 1.20856 0.86128 1.05256 1.04598 1.23536 0.98926 0.88389 1.02612 1.73887 0.89339 1.24017 1.19286 1.84846 1.21633 1.22971 1.67057 1.25887 1.00650 0.83738 1.02518 1.22108 0.92807 0.99245 1.10143 1.21040 1.03599 0.85887 0.91940 1.65766 1.02851 1.51438 1.00761 1.23293 0.94170 1.00280 0.92864 1.22259 0.95224 1.02453 0.96114 1.22253 0.96535 1.02815 0.93920 1.23281 0.91577 0.97687 0.95224 0.90893 1.21351 0.94322 1.01992 0.81585 1.46717 1.32688 1.49735 1.11365 1.20296 0.79668 0.79472 0.89064 1.90702 1.47355 1.35380 1.65370 1.23308 1.04787 1.05418 0.94265 1.84794 1.34215 1.59875 1.12276 1.22320 1.19256 1.33202 0.92222 0.89413 1.24711 0.96753 0.95696 0.94119 1.69938 1.33406 1.43150 1.05193 0.86739 0.82506 0.82071 0.80578 1.19213 1.15849 1.19933 0.89197 0.89654 0.88425 0.76682 0.88585 0.88337 0.89756 0.93000 0.90691 0.91381 0.90152 0.91003 0.89825 0.91107 0.76272 0.88639 0.88537 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 8.59 36.01 0.31 -0.70 16 2 C 0.02 0.25 6.47 -82.10 -0.53 -0.28 16 3 N -0.36 -4.03 12.07 33.42 0.40 -3.63 16 4 O 0.10 0.93 11.20 17.17 0.19 1.12 16 5 C -0.05 -0.30 10.54 29.74 0.31 0.01 16 6 C -0.24 -1.93 3.96 -104.42 -0.41 -2.34 16 7 C 0.10 0.84 5.77 -4.98 -0.03 0.81 16 8 N -0.49 -4.02 5.33 -223.57 -1.19 -5.21 16 9 C 0.02 0.14 6.23 -2.18 -0.01 0.13 16 10 C -0.12 -0.75 7.00 -25.35 -0.18 -0.93 16 11 C -0.12 -0.82 6.55 -25.35 -0.17 -0.99 16 12 C 0.03 0.26 2.15 -66.07 -0.14 0.12 16 13 H 0.07 0.64 3.69 -51.93 -0.19 0.44 16 14 C 0.13 1.44 4.90 -4.04 -0.02 1.42 16 15 N -0.74 -9.25 3.88 -60.29 -0.23 -9.49 16 16 C 0.53 9.15 7.85 -10.98 -0.09 9.06 16 17 O -0.51 -10.84 15.84 5.56 0.09 -10.75 16 18 C -0.13 -2.41 6.16 36.01 0.22 -2.19 16 19 S -0.14 -3.46 18.54 -107.50 -1.99 -5.45 16 20 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 24 Si 0.86 21.67 27.74 -169.99 -4.72 16.96 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.23 -5.92 6.73 56.52 0.38 -5.54 16 27 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 28 H 0.09 0.80 8.13 -51.92 -0.42 0.38 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.87 2.70 -51.92 -0.14 0.73 16 31 H 0.22 0.56 8.06 -52.49 -0.42 0.13 16 32 H 0.10 0.89 4.62 -51.93 -0.24 0.65 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.34 5.02 -51.93 -0.26 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.40 4.19 3.00 -40.82 -0.12 4.06 16 43 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -34.70 362.04 -7.75 -42.45 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.01 Total: 2.06 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.52 Total: -7.81 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.25 Total: -44.03 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.28 Total: -9.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.70 -7.75 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.877 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds