Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30170 * 126.79630 * 2 1 4 4 O 1.20920 * 111.60381 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56663 * 359.76462 * 4 3 2 6 6 C 1.35447 * 106.44409 * 0.37860 * 5 4 3 7 7 C 1.50702 * 128.00620 * 179.90989 * 6 5 4 8 8 N 1.46897 * 109.47133 * 267.93371 * 7 6 5 9 9 C 1.48559 * 111.00088 * 49.46114 * 8 7 6 10 10 C 1.54381 * 104.59729 * 200.95668 * 9 8 7 11 11 C 1.54263 * 105.05688 * 23.85390 * 10 9 8 12 12 C 1.48568 * 111.00270 * 294.04285 * 8 7 6 13 13 H 1.08994 * 110.50950 * 40.21123 * 12 8 7 14 14 C 1.53003 * 110.40826 * 277.81720 * 12 8 7 15 15 N 1.46500 * 109.46875 * 68.37756 * 14 12 8 16 16 C 1.34779 * 119.99935 * 186.64382 * 15 14 12 17 17 O 1.21276 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99955 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.46899 * 179.97438 * 18 16 15 20 20 C 1.76192 * 99.99908 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00281 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99944 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99786 * 0.27365 * 22 20 19 25 25 H 1.48497 * 109.47388 * 269.72867 * 24 22 20 26 26 H 1.48506 * 109.47059 * 29.72802 * 24 22 20 27 27 H 1.48492 * 109.47069 * 149.72634 * 24 22 20 28 28 H 1.09008 * 109.47020 * 264.28456 * 1 2 3 29 29 H 1.09000 * 109.48035 * 24.28943 * 1 2 3 30 30 H 1.09010 * 109.47051 * 144.29403 * 1 2 3 31 31 H 1.08000 * 126.77668 * 180.28812 * 5 4 3 32 32 H 1.08997 * 109.46807 * 147.93469 * 7 6 5 33 33 H 1.08995 * 109.46929 * 27.93254 * 7 6 5 34 34 H 1.09000 * 110.41200 * 82.18096 * 9 8 7 35 35 H 1.09000 * 110.51420 * 319.78989 * 9 8 7 36 36 H 1.08991 * 110.32417 * 264.95415 * 10 9 8 37 37 H 1.09007 * 110.40785 * 142.79105 * 10 9 8 38 38 H 1.09000 * 110.32188 * 241.10151 * 11 10 9 39 39 H 1.09006 * 110.32280 * 118.89446 * 11 10 9 40 40 H 1.08996 * 109.47148 * 308.37609 * 14 12 8 41 41 H 1.09001 * 109.46893 * 188.37091 * 14 12 8 42 42 H 0.96998 * 120.00341 * 6.63935 * 15 14 12 43 43 H 1.08998 * 109.47104 * 59.99995 * 18 16 15 44 44 H 1.08991 * 109.47226 * 299.99344 * 18 16 15 45 45 H 0.97006 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4536 0.7255 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 2.3540 -1.1320 0.0006 7 6 1.9592 -2.5864 0.0015 8 7 1.7900 -3.0487 -1.3825 9 6 2.9591 -2.6698 -2.2171 10 6 2.4330 -2.7161 -3.6678 11 6 0.9078 -2.5182 -3.5474 12 6 0.6408 -2.3690 -2.0342 13 1 0.6119 -1.3158 -1.7553 14 6 -0.6717 -3.0570 -1.6536 15 7 -0.9473 -2.8310 -0.2326 16 6 -1.9839 -3.4558 0.3604 17 8 -2.6887 -4.2046 -0.2824 18 6 -2.2671 -3.2237 1.8223 19 16 -3.7113 -4.1954 2.3187 20 6 -3.8113 -3.7475 4.0198 21 1 -3.0938 -3.0583 4.4399 22 6 -4.8123 -4.2806 4.8201 23 7 -4.8873 -3.9457 6.0908 24 14 -6.0487 -5.4787 4.0955 25 1 -7.2181 -4.7275 3.5726 26 1 -5.4126 -6.2375 2.9886 27 1 -6.4983 -6.4237 5.1490 28 1 -0.3633 -0.1024 1.0226 29 1 -0.3635 0.9366 -0.4227 30 1 -0.3634 -0.8346 -0.5998 31 1 4.5339 -1.1532 0.0120 32 1 1.0207 -2.7077 0.5424 33 1 2.7377 -3.1738 0.4881 34 1 3.7696 -3.3864 -2.0838 35 1 3.2970 -1.6641 -1.9672 36 1 2.6548 -3.6824 -4.1203 37 1 2.8736 -1.9123 -4.2577 38 1 0.3811 -3.3875 -3.9409 39 1 0.6001 -1.6164 -4.0768 40 1 -0.5888 -4.1274 -1.8419 41 1 -1.4846 -2.6448 -2.2514 42 1 -0.3838 -2.2319 0.2814 43 1 -2.4664 -2.1654 1.9902 44 1 -1.4032 -3.5289 2.4126 45 1 -5.5870 -4.3180 6.6501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713501718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = 26.717352 kcal Electronic energy + Delta-G solvation = -27933.529669 eV Core-core repulsion = 24080.531306 eV Total energy + Delta-G solvation = -3852.998363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.06391 -41.31250 -40.01200 -36.26472 -35.86054 -34.67173 -34.05455 -32.02826 -31.82826 -30.11718 -29.75460 -27.86689 -27.36263 -25.57570 -23.27454 -22.55028 -22.19588 -21.38830 -21.01201 -19.83774 -18.80937 -18.52896 -17.80370 -17.74214 -17.16487 -17.00395 -16.68938 -16.13349 -15.87913 -15.66903 -15.50680 -15.06786 -14.92271 -14.74430 -14.34537 -14.19647 -14.08050 -13.64570 -13.49787 -13.41508 -13.33949 -13.10510 -12.99537 -12.84157 -12.72237 -12.44807 -12.29285 -12.11143 -11.85749 -11.75145 -11.37965 -11.16914 -11.00722 -10.95823 -10.53981 -10.44277 -10.13562 -9.61129 -8.99447 -8.51477 -6.22204 0.49411 0.97940 1.07888 1.31876 1.47008 1.53421 1.55673 2.16952 2.25696 2.32459 2.70515 2.86980 2.92543 3.09352 3.44109 3.59987 3.66236 3.70929 3.87449 3.98328 4.04148 4.14424 4.17740 4.24770 4.37440 4.40666 4.43328 4.51221 4.57469 4.61651 4.68180 4.71241 4.73153 4.81739 4.91113 4.97392 5.06194 5.08713 5.19850 5.27512 5.35041 5.70692 5.80550 5.91553 6.11502 6.30553 6.93747 7.11361 7.25654 8.60957 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002917 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.650838 B = 9594.995001 C =10725.470288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.013 3.987 3 N -0.393 5.393 4 O 0.093 5.907 5 C -0.024 4.024 6 C -0.247 4.247 7 C 0.107 3.893 8 N -0.497 5.497 9 C 0.023 3.977 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.037 3.963 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.535 3.465 17 O -0.555 6.555 18 C -0.116 4.116 19 S -0.168 6.168 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.235 1.235 27 H -0.260 1.260 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.408 0.592 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.959 6.191 -19.917 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.146 4.146 3 N -0.100 5.100 4 O 0.029 5.971 5 C -0.107 4.107 6 C -0.253 4.253 7 C -0.022 4.022 8 N -0.219 5.219 9 C -0.104 4.104 10 C -0.158 4.158 11 C -0.156 4.156 12 C -0.072 4.072 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.379 5.379 16 C 0.320 3.680 17 O -0.433 6.433 18 C -0.267 4.267 19 S 0.058 5.942 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.159 4.159 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.159 1.159 27 H -0.184 1.184 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.274 0.726 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.251 0.749 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.439 5.680 -20.783 29.698 hybrid contribution 0.299 0.966 1.578 1.874 sum 20.738 6.646 -19.206 29.036 Atomic orbital electron populations 1.20843 0.86247 1.05276 1.04501 1.23730 0.99192 0.89006 1.02671 1.73889 0.90119 1.25033 1.20920 1.84810 1.20923 1.24332 1.67010 1.26622 1.01688 0.82644 0.99700 1.22115 0.93121 0.98795 1.11255 1.21004 1.03267 0.86104 0.91829 1.65773 1.03425 1.51606 1.01096 1.23350 0.93739 1.00793 0.92555 1.22275 0.94290 1.03109 0.96172 1.22285 0.97476 1.03167 0.92704 1.23197 0.90471 0.97187 0.96346 0.90883 1.21483 0.96050 1.01564 0.80105 1.46547 1.30911 1.48270 1.12190 1.19955 0.80383 0.79482 0.88138 1.90691 1.49165 1.37535 1.65900 1.23312 1.02329 1.05189 0.95894 1.84695 1.38066 1.61667 1.09758 1.22472 1.18584 1.32463 0.94228 0.91998 1.25560 0.98570 0.97324 0.94487 1.70017 1.34545 1.44555 1.06437 0.85875 0.80208 0.80246 0.80115 1.18694 1.15905 1.18384 0.89298 0.89603 0.88410 0.72603 0.90235 0.86745 0.88452 0.92685 0.90328 0.90339 0.90387 0.90201 0.91155 0.90866 0.74877 0.86970 0.86983 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 8.59 71.24 0.61 -1.33 16 2 C 0.01 0.24 6.47 43.58 0.28 0.52 16 3 N -0.39 -8.39 12.07 -49.58 -0.60 -8.99 16 4 O 0.09 1.56 11.20 71.60 0.80 2.36 16 5 C -0.02 -0.25 10.54 67.17 0.71 0.46 16 6 C -0.25 -3.45 3.96 -19.74 -0.08 -3.53 16 7 C 0.11 1.48 5.77 85.56 0.49 1.97 16 8 N -0.50 -7.07 5.33 -861.24 -4.59 -11.66 16 9 C 0.02 0.23 6.23 86.45 0.54 0.77 16 10 C -0.12 -1.16 7.00 31.49 0.22 -0.94 16 11 C -0.12 -1.43 6.55 31.49 0.21 -1.22 16 12 C 0.04 0.56 2.15 45.06 0.10 0.65 16 13 H 0.07 1.15 3.69 -2.39 -0.01 1.14 16 14 C 0.13 2.73 4.90 86.38 0.42 3.16 16 15 N -0.72 -17.12 3.88 -463.06 -1.80 -18.92 16 16 C 0.53 18.11 7.85 87.66 0.69 18.80 16 17 O -0.56 -23.29 15.84 -3.02 -0.05 -23.33 16 18 C -0.12 -4.34 6.16 71.24 0.44 -3.90 16 19 S -0.17 -8.43 18.54 -56.49 -1.05 -9.48 16 20 C -0.53 -30.69 10.04 67.96 0.68 -30.01 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 22 C 0.05 2.69 5.50 84.86 0.47 3.16 16 23 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 24 Si 0.91 44.80 27.74 68.60 1.90 46.71 16 25 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.24 -11.48 6.73 99.48 0.67 -10.81 16 27 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 28 H 0.09 1.53 8.13 -2.38 -0.02 1.51 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.63 2.70 -2.38 -0.01 1.63 16 31 H 0.26 0.15 8.06 -2.91 -0.02 0.12 16 32 H 0.08 1.34 4.62 -2.39 -0.01 1.33 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.52 5.02 -2.39 -0.01 0.51 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.08 0.99 7.86 -2.39 -0.02 0.97 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.41 8.10 3.00 -92.71 -0.28 7.83 16 43 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 44 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 45 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -75.71 362.04 1.42 -74.29 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.72 Total: 15.98 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.78 Total: -11.44 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -6.69 Total: -95.09 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.75 Total: -20.98 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -75.71 1.42 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.008 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds