Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34039 * 126.77928 * 2 1 4 4 N 1.20925 * 111.56488 * 179.97438 * 3 2 1 5 5 C 1.30174 * 111.60344 * 359.74191 * 4 3 2 6 6 C 1.35456 * 126.77126 * 179.97438 * 2 1 3 7 7 C 1.50700 * 128.00941 * 359.97054 * 6 2 1 8 8 N 1.46892 * 109.47215 * 89.27730 * 7 6 2 9 9 C 1.48564 * 111.00058 * 48.21061 * 8 7 6 10 10 C 1.54378 * 104.59379 * 200.95774 * 9 8 7 11 11 C 1.54260 * 105.05965 * 23.85003 * 10 9 8 12 12 C 1.48558 * 111.00265 * 292.78784 * 8 7 6 13 13 H 1.09006 * 110.50962 * 40.21298 * 12 8 7 14 14 C 1.52999 * 110.41001 * 277.82076 * 12 8 7 15 15 N 1.46494 * 109.47327 * 67.73004 * 14 12 8 16 16 C 1.34775 * 120.00302 * 187.28760 * 15 14 12 17 17 O 1.21283 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00290 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00109 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99654 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99880 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00259 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99989 * 180.27460 * 22 20 19 25 25 H 1.48490 * 109.47390 * 179.72272 * 24 22 20 26 26 H 1.48503 * 109.46988 * 299.72314 * 24 22 20 27 27 H 1.48507 * 109.47168 * 59.71931 * 24 22 20 28 28 H 1.08993 * 109.47193 * 263.78792 * 1 2 3 29 29 H 1.08999 * 109.46544 * 23.78973 * 1 2 3 30 30 H 1.08997 * 109.47216 * 143.78606 * 1 2 3 31 31 H 1.08004 * 126.79856 * 180.25944 * 5 4 3 32 32 H 1.09003 * 109.46963 * 329.27490 * 7 6 2 33 33 H 1.08999 * 109.46732 * 209.28038 * 7 6 2 34 34 H 1.08998 * 110.41574 * 82.17709 * 9 8 7 35 35 H 1.09002 * 110.50805 * 319.78325 * 9 8 7 36 36 H 1.08998 * 110.32642 * 264.95232 * 10 9 8 37 37 H 1.09001 * 110.40822 * 142.78703 * 10 9 8 38 38 H 1.08996 * 110.32472 * 241.10000 * 11 10 9 39 39 H 1.09005 * 110.32273 * 118.89690 * 11 10 9 40 40 H 1.08999 * 109.47205 * 307.72228 * 14 12 8 41 41 H 1.09005 * 109.46739 * 187.72766 * 14 12 8 42 42 H 0.97001 * 120.00181 * 7.28336 * 15 14 12 43 43 H 1.08998 * 109.47651 * 59.99326 * 18 16 15 44 44 H 1.09007 * 109.46988 * 299.99602 * 18 16 15 45 45 H 0.97000 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3096 1.0736 0.0000 4 7 3.4764 0.7562 0.0005 5 6 3.6213 -0.5374 0.0064 6 6 2.3179 -1.0850 0.0005 7 6 1.9223 -2.5392 0.0017 8 7 1.7763 -3.0081 -1.3826 9 6 2.9461 -2.6080 -2.2065 10 6 2.4355 -2.6682 -3.6621 11 6 0.9056 -2.5008 -3.5575 12 6 0.6204 -2.3533 -2.0475 13 1 0.5676 -1.3001 -1.7717 14 6 -0.6818 -3.0666 -1.6782 15 7 -0.9681 -2.8556 -0.2571 16 6 -1.9885 -3.5122 0.3295 17 8 -2.6700 -4.2774 -0.3193 18 6 -2.2834 -3.2947 1.7912 19 16 -3.7011 -4.3093 2.2782 20 6 -3.8199 -3.8719 3.9809 21 1 -3.1233 -3.1648 4.4066 22 6 -4.8081 -4.4368 4.7752 23 7 -5.6567 -5.2989 4.2564 24 14 -4.9389 -3.9673 6.5785 25 1 -6.0720 -4.6988 7.1996 26 1 -3.6773 -4.3245 7.2758 27 1 -5.1711 -2.5050 6.6937 28 1 -0.3633 -0.1112 1.0216 29 1 -0.3632 0.9404 -0.4146 30 1 -0.3633 -0.8291 -0.6071 31 1 4.5528 -1.0841 0.0120 32 1 0.9747 -2.6575 0.5273 33 1 2.6921 -3.1246 0.5045 34 1 3.7694 -3.3077 -2.0631 35 1 3.2611 -1.5950 -1.9558 36 1 2.6812 -3.6311 -4.1100 37 1 2.8658 -1.8573 -4.2497 38 1 0.4004 -3.3814 -3.9540 39 1 0.5852 -1.6066 -4.0924 40 1 -0.5795 -4.1340 -1.8738 41 1 -1.4988 -2.6642 -2.2772 42 1 -0.4233 -2.2434 0.2617 43 1 -2.5135 -2.2432 1.9630 44 1 -1.4131 -3.5777 2.3835 45 1 -6.3475 -5.6934 4.8115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713502102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = 52.223211 kcal Electronic energy + Delta-G solvation = -27887.206002 eV Core-core repulsion = 24035.313656 eV Total energy + Delta-G solvation = -3851.892346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.35739 -40.39350 -38.77406 -35.24616 -34.80365 -33.43561 -32.44322 -32.06094 -30.80305 -28.79867 -28.33276 -26.57700 -25.54013 -24.62427 -23.12891 -22.11574 -21.21955 -20.35987 -19.94846 -18.15335 -17.91908 -17.42940 -16.86729 -16.42609 -16.00014 -15.68536 -15.24795 -14.89845 -14.81584 -14.69509 -14.35096 -14.02212 -13.92770 -13.58452 -13.22579 -13.08598 -12.98477 -12.75365 -12.62450 -12.53866 -12.07824 -11.89100 -11.76376 -11.69003 -11.46239 -11.11041 -11.04998 -11.03814 -10.88540 -10.77778 -10.54120 -9.84432 -9.62851 -9.43258 -9.07730 -8.93662 -8.90522 -8.25966 -6.51664 -6.22887 -3.93737 1.03662 1.81542 2.68008 2.97323 3.06137 3.22492 3.26472 3.29212 3.57741 3.63674 3.88241 4.15418 4.19012 4.25410 4.27873 4.41007 4.54616 4.64194 4.79622 4.81958 4.95455 5.01001 5.06744 5.09989 5.12265 5.17325 5.26482 5.29614 5.39857 5.45350 5.46927 5.49255 5.59061 5.61753 5.68816 5.71797 5.80532 5.83533 5.95027 6.07952 6.42000 6.52679 6.57367 7.55836 7.58259 7.86046 8.33388 8.55396 9.22360 10.84413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002887 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.623779 B = 9697.060008 C =10974.137598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.017 4.017 3 O 0.098 5.902 4 N -0.365 5.365 5 C 0.005 3.995 6 C -0.241 4.241 7 C 0.106 3.894 8 N -0.486 5.486 9 C 0.024 3.976 10 C -0.123 4.123 11 C -0.116 4.116 12 C 0.031 3.969 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.746 5.746 16 C 0.530 3.470 17 O -0.511 6.511 18 C -0.156 4.156 19 S -0.056 6.056 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.283 1.283 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.393 0.607 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.586 10.280 -13.901 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 O 0.033 5.967 4 N -0.068 5.068 5 C -0.174 4.174 6 C -0.246 4.246 7 C -0.023 4.023 8 N -0.208 5.208 9 C -0.103 4.103 10 C -0.161 4.161 11 C -0.155 4.155 12 C -0.078 4.078 13 H 0.088 0.912 14 C 0.007 3.993 15 N -0.408 5.408 16 C 0.316 3.684 17 O -0.385 6.385 18 C -0.307 4.307 19 S 0.171 5.829 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.208 1.208 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.207 0.793 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.234 0.766 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.067 9.320 -14.929 25.222 hybrid contribution 0.986 1.630 2.290 2.978 sum 19.052 10.950 -12.639 25.350 Atomic orbital electron populations 1.21054 0.84176 1.06162 1.05390 1.24384 0.96156 0.85925 1.01744 1.84834 1.11384 1.33047 1.67430 1.73901 0.97126 1.16787 1.18998 1.24926 0.99603 0.90230 1.02690 1.21930 0.92696 0.98984 1.11020 1.21039 1.03422 0.85974 0.91902 1.65741 1.02575 1.51784 1.00735 1.23260 0.94165 1.00114 0.92810 1.22268 0.95286 1.02445 0.96120 1.22250 0.96379 1.02906 0.93941 1.23278 0.91678 0.97560 0.95250 0.91217 1.21353 0.94201 1.02019 0.81760 1.46733 1.34556 1.48261 1.11217 1.20328 0.79303 0.79544 0.89186 1.90710 1.47863 1.34881 1.65019 1.23563 1.06788 1.06147 0.94217 1.85418 1.32052 1.55277 1.10192 1.22828 1.19648 1.31178 0.94926 0.90988 1.24979 0.94679 0.94557 0.99270 1.70000 1.16564 1.27154 1.36517 0.86240 0.77899 0.78701 0.82757 1.20806 1.19939 1.19931 0.88270 0.88794 0.87538 0.79323 0.88645 0.88366 0.89854 0.92940 0.90702 0.91443 0.90102 0.90973 0.89806 0.91101 0.76597 0.89329 0.89293 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 8.54 36.01 0.31 -0.46 16 2 C -0.02 -0.15 6.70 -35.30 -0.24 -0.39 16 3 O 0.10 1.01 11.20 17.18 0.19 1.21 16 4 N -0.36 -3.95 12.07 30.35 0.37 -3.58 16 5 C 0.00 0.04 10.44 -17.06 -0.18 -0.14 16 6 C -0.24 -2.05 3.93 -104.42 -0.41 -2.46 16 7 C 0.11 0.90 5.75 -4.98 -0.03 0.87 16 8 N -0.49 -4.25 5.33 -223.57 -1.19 -5.44 16 9 C 0.02 0.18 6.22 -2.18 -0.01 0.17 16 10 C -0.12 -0.82 7.00 -25.35 -0.18 -1.00 16 11 C -0.12 -0.83 6.55 -25.35 -0.17 -1.00 16 12 C 0.03 0.26 2.14 -66.07 -0.14 0.12 16 13 H 0.07 0.56 3.75 -51.93 -0.19 0.37 16 14 C 0.13 1.43 4.95 -4.05 -0.02 1.41 16 15 N -0.75 -9.26 3.98 -60.30 -0.24 -9.50 16 16 C 0.53 9.38 7.85 -10.99 -0.09 9.29 16 17 O -0.51 -11.17 15.83 5.56 0.09 -11.08 16 18 C -0.16 -3.01 6.16 36.00 0.22 -2.79 16 19 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 24 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.10 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 0.79 2.70 -51.93 -0.14 0.65 16 31 H 0.19 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.10 0.89 4.50 -51.93 -0.23 0.65 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.41 4.95 -51.93 -0.26 0.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.39 3.99 2.97 -40.82 -0.12 3.87 16 43 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 44 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -34.33 364.69 -8.49 -42.82 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.97 Total: 1.88 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.73 Total: -9.09 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.33 Total: -43.61 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.28 Total: -9.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.33 -8.49 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713502102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.044 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds