Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34039 * 126.77928 * 2 1 4 4 N 1.20925 * 111.56488 * 179.97438 * 3 2 1 5 5 C 1.30174 * 111.60344 * 359.74191 * 4 3 2 6 6 C 1.35456 * 126.77126 * 179.97438 * 2 1 3 7 7 C 1.50700 * 128.00941 * 359.97054 * 6 2 1 8 8 N 1.46892 * 109.47215 * 89.27730 * 7 6 2 9 9 C 1.48564 * 111.00058 * 48.21061 * 8 7 6 10 10 C 1.54378 * 104.59379 * 200.95774 * 9 8 7 11 11 C 1.54260 * 105.05965 * 23.85003 * 10 9 8 12 12 C 1.48558 * 111.00265 * 292.78784 * 8 7 6 13 13 H 1.09006 * 110.50962 * 40.21298 * 12 8 7 14 14 C 1.52999 * 110.41001 * 277.82076 * 12 8 7 15 15 N 1.46494 * 109.47327 * 67.73004 * 14 12 8 16 16 C 1.34775 * 120.00302 * 187.28760 * 15 14 12 17 17 O 1.21283 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00290 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00109 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99654 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99880 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00259 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99989 * 180.27460 * 22 20 19 25 25 H 1.48490 * 109.47390 * 179.72272 * 24 22 20 26 26 H 1.48503 * 109.46988 * 299.72314 * 24 22 20 27 27 H 1.48507 * 109.47168 * 59.71931 * 24 22 20 28 28 H 1.08993 * 109.47193 * 263.78792 * 1 2 3 29 29 H 1.08999 * 109.46544 * 23.78973 * 1 2 3 30 30 H 1.08997 * 109.47216 * 143.78606 * 1 2 3 31 31 H 1.08004 * 126.79856 * 180.25944 * 5 4 3 32 32 H 1.09003 * 109.46963 * 329.27490 * 7 6 2 33 33 H 1.08999 * 109.46732 * 209.28038 * 7 6 2 34 34 H 1.08998 * 110.41574 * 82.17709 * 9 8 7 35 35 H 1.09002 * 110.50805 * 319.78325 * 9 8 7 36 36 H 1.08998 * 110.32642 * 264.95232 * 10 9 8 37 37 H 1.09001 * 110.40822 * 142.78703 * 10 9 8 38 38 H 1.08996 * 110.32472 * 241.10000 * 11 10 9 39 39 H 1.09005 * 110.32273 * 118.89690 * 11 10 9 40 40 H 1.08999 * 109.47205 * 307.72228 * 14 12 8 41 41 H 1.09005 * 109.46739 * 187.72766 * 14 12 8 42 42 H 0.97001 * 120.00181 * 7.28336 * 15 14 12 43 43 H 1.08998 * 109.47651 * 59.99326 * 18 16 15 44 44 H 1.09007 * 109.46988 * 299.99602 * 18 16 15 45 45 H 0.97000 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3096 1.0736 0.0000 4 7 3.4764 0.7562 0.0005 5 6 3.6213 -0.5374 0.0064 6 6 2.3179 -1.0850 0.0005 7 6 1.9223 -2.5392 0.0017 8 7 1.7763 -3.0081 -1.3826 9 6 2.9461 -2.6080 -2.2065 10 6 2.4355 -2.6682 -3.6621 11 6 0.9056 -2.5008 -3.5575 12 6 0.6204 -2.3533 -2.0475 13 1 0.5676 -1.3001 -1.7717 14 6 -0.6818 -3.0666 -1.6782 15 7 -0.9681 -2.8556 -0.2571 16 6 -1.9885 -3.5122 0.3295 17 8 -2.6700 -4.2774 -0.3193 18 6 -2.2834 -3.2947 1.7912 19 16 -3.7011 -4.3093 2.2782 20 6 -3.8199 -3.8719 3.9809 21 1 -3.1233 -3.1648 4.4066 22 6 -4.8081 -4.4368 4.7752 23 7 -5.6567 -5.2989 4.2564 24 14 -4.9389 -3.9673 6.5785 25 1 -6.0720 -4.6988 7.1996 26 1 -3.6773 -4.3245 7.2758 27 1 -5.1711 -2.5050 6.6937 28 1 -0.3633 -0.1112 1.0216 29 1 -0.3632 0.9404 -0.4146 30 1 -0.3633 -0.8291 -0.6071 31 1 4.5528 -1.0841 0.0120 32 1 0.9747 -2.6575 0.5273 33 1 2.6921 -3.1246 0.5045 34 1 3.7694 -3.3077 -2.0631 35 1 3.2611 -1.5950 -1.9558 36 1 2.6812 -3.6311 -4.1100 37 1 2.8658 -1.8573 -4.2497 38 1 0.4004 -3.3814 -3.9540 39 1 0.5852 -1.6066 -4.0924 40 1 -0.5795 -4.1340 -1.8738 41 1 -1.4988 -2.6642 -2.2772 42 1 -0.4233 -2.2434 0.2617 43 1 -2.5135 -2.2432 1.9630 44 1 -1.4131 -3.5777 2.3835 45 1 -6.3475 -5.6934 4.8115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713502102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = 28.315292 kcal Electronic energy + Delta-G solvation = -27888.242728 eV Core-core repulsion = 24035.313656 eV Total energy + Delta-G solvation = -3852.929071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.05459 -41.28495 -39.96925 -35.97627 -35.84081 -34.55985 -34.16831 -32.70450 -31.93664 -29.98612 -28.96529 -27.66081 -27.23680 -25.53473 -23.80815 -22.77841 -22.18320 -21.19554 -20.85700 -19.75872 -18.84677 -18.24556 -17.72569 -17.70421 -17.03767 -16.85405 -16.63845 -16.14828 -15.81769 -15.71269 -15.53057 -15.14702 -14.63091 -14.53705 -14.37896 -14.17902 -13.99354 -13.71028 -13.42401 -13.35494 -13.14298 -13.05606 -12.84639 -12.70688 -12.63241 -12.53868 -12.35062 -12.11795 -11.78095 -11.71251 -11.49855 -11.18680 -11.10696 -10.91956 -10.30289 -10.24366 -10.08234 -9.59258 -8.63248 -8.32165 -6.09608 0.36207 1.15524 1.28635 1.45230 1.48479 1.57709 1.62632 2.03927 2.23678 2.30247 2.92147 3.02074 3.24544 3.32360 3.53461 3.59116 3.62916 3.73087 3.88734 4.00472 4.01827 4.17172 4.22834 4.30039 4.38656 4.40851 4.47683 4.51881 4.55246 4.57646 4.67648 4.72212 4.75568 4.87155 4.90496 4.99439 5.04587 5.09397 5.20757 5.26192 5.40220 5.44320 5.80694 5.90366 6.21999 6.38098 7.09389 7.18021 7.21164 8.76623 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002887 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.623779 B = 9697.060008 C =10974.137598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.017 4.017 3 O 0.083 5.917 4 N -0.392 5.392 5 C 0.011 3.989 6 C -0.242 4.242 7 C 0.108 3.892 8 N -0.499 5.499 9 C 0.026 3.974 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.037 3.963 13 H 0.079 0.921 14 C 0.131 3.869 15 N -0.719 5.719 16 C 0.534 3.466 17 O -0.559 6.559 18 C -0.134 4.134 19 S -0.146 6.146 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.280 1.280 26 H -0.263 1.263 27 H -0.262 1.262 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.211 0.789 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.407 0.593 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.351 11.819 -13.514 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 O 0.021 5.979 4 N -0.098 5.098 5 C -0.168 4.168 6 C -0.247 4.247 7 C -0.021 4.021 8 N -0.221 5.221 9 C -0.101 4.101 10 C -0.159 4.159 11 C -0.155 4.155 12 C -0.071 4.071 13 H 0.096 0.904 14 C 0.008 3.992 15 N -0.379 5.379 16 C 0.320 3.680 17 O -0.437 6.437 18 C -0.285 4.285 19 S 0.081 5.919 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.206 1.206 26 H -0.187 1.187 27 H -0.186 1.186 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.228 0.772 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.251 0.749 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.871 10.905 -14.556 26.938 hybrid contribution 0.545 1.170 2.065 2.435 sum 20.416 12.075 -12.491 26.807 Atomic orbital electron populations 1.21124 0.83137 1.06784 1.05881 1.24688 0.96761 0.85687 1.01006 1.84809 1.11486 1.33631 1.67969 1.73904 0.97485 1.17849 1.20580 1.25317 1.00563 0.89768 1.01193 1.21933 0.92691 0.98854 1.11260 1.20996 1.03118 0.86121 0.91835 1.65738 1.03171 1.52150 1.01042 1.23279 0.93797 1.00148 0.92914 1.22278 0.94724 1.03057 0.95835 1.22287 0.96901 1.03463 0.92896 1.23222 0.90264 0.97408 0.96234 0.90389 1.21468 0.95980 1.01390 0.80412 1.46505 1.32639 1.46793 1.11999 1.20075 0.79994 0.79502 0.88456 1.90702 1.49952 1.37282 1.65730 1.23420 1.03814 1.05732 0.95579 1.85595 1.36851 1.58293 1.11140 1.23186 1.19957 1.31250 0.95103 0.89829 1.26084 0.94122 0.94275 1.04525 1.70169 1.17451 1.28624 1.38496 0.85048 0.78201 0.78822 0.76210 1.20562 1.18741 1.18607 0.87455 0.87215 0.88096 0.77222 0.89602 0.87566 0.89158 0.93087 0.90461 0.90391 0.90431 0.89657 0.91628 0.90595 0.74918 0.86876 0.87417 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.54 71.24 0.61 -0.69 16 2 C -0.02 -0.26 6.70 25.04 0.17 -0.09 16 3 O 0.08 1.60 11.20 71.64 0.80 2.40 16 4 N -0.39 -7.91 12.07 -59.26 -0.72 -8.63 16 5 C 0.01 0.16 10.44 85.71 0.89 1.06 16 6 C -0.24 -3.60 3.93 -19.73 -0.08 -3.68 16 7 C 0.11 1.62 5.75 85.56 0.49 2.11 16 8 N -0.50 -7.74 5.33 -861.26 -4.59 -12.34 16 9 C 0.03 0.33 6.22 86.45 0.54 0.86 16 10 C -0.12 -1.34 7.00 31.49 0.22 -1.12 16 11 C -0.12 -1.45 6.55 31.49 0.21 -1.24 16 12 C 0.04 0.56 2.14 45.06 0.10 0.66 16 13 H 0.08 1.07 3.75 -2.38 -0.01 1.06 16 14 C 0.13 2.73 4.95 86.38 0.43 3.16 16 15 N -0.72 -16.84 3.98 -463.07 -1.84 -18.68 16 16 C 0.53 18.61 7.85 87.66 0.69 19.30 16 17 O -0.56 -24.89 15.83 -3.04 -0.05 -24.94 16 18 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 19 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 20 C -0.55 -30.53 9.50 67.95 0.65 -29.88 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 24 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 28 H 0.11 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.27 2.70 -2.39 -0.01 1.26 16 31 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.09 1.41 4.50 -2.39 -0.01 1.40 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.67 4.95 -2.39 -0.01 0.66 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 1.02 7.86 -2.39 -0.02 1.01 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 1.66 8.10 -2.39 -0.02 1.65 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.41 7.42 2.97 -92.71 -0.28 7.14 16 43 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 44 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -76.04 364.69 1.33 -74.71 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.76 Total: 19.51 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.81 Total: -12.86 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -6.86 Total: -94.66 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.75 Total: -22.54 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -76.04 1.33 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713502102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.027 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds