Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41381 * 126.80230 * 2 1 4 4 C 1.35450 * 103.98726 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77978 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47189 * 89.99836 * 5 4 3 7 7 C 1.47905 * 111.00050 * 69.87367 * 6 5 4 8 8 C 1.53991 * 107.22505 * 214.25344 * 7 6 5 9 9 C 1.54594 * 105.14285 * 1.12969 * 8 7 6 10 10 H 1.08999 * 110.72080 * 263.59761 * 9 8 7 11 11 C 1.53003 * 110.72619 * 140.49275 * 9 8 7 12 12 N 1.46491 * 109.47193 * 66.45299 * 11 9 8 13 13 C 1.34776 * 120.00395 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00394 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47083 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99934 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00351 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99609 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46858 * 90.00199 * 21 19 17 23 23 H 1.48499 * 109.46904 * 209.99674 * 21 19 17 24 24 H 1.48500 * 109.47437 * 329.99888 * 21 19 17 25 25 C 1.48813 * 111.18681 * 312.54033 * 6 5 4 26 26 O 1.34050 * 106.44377 * 0.24369 * 4 3 2 27 27 N 1.20919 * 111.56537 * 359.56330 * 26 4 3 28 28 H 1.09004 * 109.47220 * 89.99553 * 1 2 3 29 29 H 1.08995 * 109.47193 * 209.99614 * 1 2 3 30 30 H 1.08997 * 109.46884 * 329.99955 * 1 2 3 31 31 H 1.08002 * 128.00604 * 0.04186 * 3 2 1 32 32 H 1.08999 * 109.46679 * 330.00231 * 5 4 3 33 33 H 1.08996 * 109.47104 * 209.99965 * 5 4 3 34 34 H 1.09002 * 109.91668 * 94.80258 * 7 6 5 35 35 H 1.09002 * 109.91761 * 333.70433 * 7 6 5 36 36 H 1.09005 * 110.30467 * 120.04331 * 8 7 6 37 37 H 1.08997 * 110.31304 * 242.20852 * 8 7 6 38 38 H 1.08992 * 109.47001 * 186.45446 * 11 9 8 39 39 H 1.09001 * 109.46697 * 306.45467 * 11 9 8 40 40 H 0.97003 * 120.00110 * 0.02562 * 12 11 9 41 41 H 1.08999 * 109.46745 * 299.99243 * 15 13 12 42 42 H 1.08992 * 109.47357 * 59.99669 * 15 13 12 43 43 H 0.96995 * 119.99950 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.51915 * 41.07024 * 25 6 5 45 45 H 1.09004 * 110.69711 * 278.02347 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6176 1.3833 7 6 5.7479 0.3622 2.0414 8 6 5.3437 0.4660 3.5237 9 6 4.6440 1.8382 3.6564 10 1 5.3431 2.5947 4.0127 11 6 3.4337 1.7410 4.5873 12 7 3.8877 1.4540 5.9502 13 6 2.9893 1.3237 6.9465 14 8 1.8050 1.4445 6.7146 15 6 3.4564 1.0290 8.3486 16 16 2.0246 0.9139 9.4498 17 6 2.8383 0.5729 10.9750 18 1 3.9151 0.4972 11.0074 19 6 2.0953 0.4025 12.1351 20 7 2.7032 0.1482 13.2746 21 14 0.2328 0.5340 12.0790 22 1 -0.3499 -0.8042 11.8054 23 1 -0.2676 1.0342 13.3847 24 1 -0.1648 1.4766 11.0026 25 6 4.2001 2.1426 2.2036 26 8 3.4538 -0.7254 -0.0064 27 7 2.2869 -1.0423 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 2.0710 2.1743 0.0006 32 1 4.7648 2.3209 -0.5153 33 1 5.6657 0.7858 -0.5155 34 1 6.8284 0.2450 1.9585 35 1 5.2457 -0.4871 1.5782 36 1 4.6544 -0.3370 3.7850 37 1 6.2276 0.4290 4.1604 38 1 2.8904 2.6858 4.5767 39 1 2.7769 0.9404 4.2470 40 1 4.8349 1.3578 6.1358 41 1 4.0003 0.0845 8.3594 42 1 4.1126 1.8301 8.6889 43 1 2.1840 0.0295 14.0852 44 1 3.2757 1.6164 1.9655 45 1 4.0824 3.2159 2.0542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713522239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = 25.729167 kcal Electronic energy + Delta-G solvation = -26568.547702 eV Core-core repulsion = 22715.506488 eV Total energy + Delta-G solvation = -3853.041214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.34679 -40.00802 -38.98533 -35.53823 -35.14380 -33.47043 -32.44232 -31.38640 -29.95777 -29.25372 -28.94637 -26.83422 -25.62748 -24.59060 -23.50020 -21.96655 -20.65300 -20.51686 -20.15014 -18.19325 -17.84243 -17.64285 -16.75557 -16.49328 -16.08706 -15.42065 -15.39423 -15.05923 -14.94455 -14.66401 -14.22851 -13.84281 -13.73329 -13.61754 -13.52694 -13.44044 -13.29446 -12.94222 -12.80787 -12.52130 -12.22617 -12.16191 -11.96102 -11.57511 -11.36791 -11.26588 -11.23981 -11.01260 -10.99137 -10.60617 -10.32110 -9.86359 -9.81426 -9.54707 -9.15434 -9.03040 -8.97458 -8.50680 -6.92388 -6.29311 -4.01061 1.01015 1.82226 2.65648 2.75047 2.96461 3.26604 3.33134 3.45408 3.50143 3.64124 3.81573 3.97206 4.18136 4.24272 4.32910 4.45211 4.56479 4.64670 4.74081 4.81742 4.88121 4.97818 5.02194 5.07649 5.09725 5.09853 5.12155 5.24360 5.27661 5.34809 5.37700 5.39002 5.47533 5.54517 5.66639 5.72480 5.73594 5.77912 5.89850 6.00700 6.25731 6.32837 6.50600 7.59071 7.89332 7.93805 8.41330 8.47585 9.16875 10.79919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.002171 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.069124 B =12895.442934 C =13896.179948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.219 4.219 4 C -0.067 4.067 5 C 0.124 3.876 6 N -0.498 5.498 7 C 0.028 3.972 8 C -0.129 4.129 9 C -0.102 4.102 10 H 0.093 0.907 11 C 0.132 3.868 12 N -0.735 5.735 13 C 0.530 3.470 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.029 3.971 26 O 0.101 5.899 27 N -0.364 5.364 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 4.169 -31.043 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 C -0.241 4.241 4 C -0.133 4.133 5 C -0.006 4.006 6 N -0.220 5.220 7 C -0.100 4.100 8 C -0.168 4.168 9 C -0.121 4.121 10 H 0.111 0.889 11 C 0.007 3.993 12 N -0.390 5.390 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.274 4.274 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.099 4.099 26 O 0.035 5.965 27 N -0.068 5.068 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.190 0.810 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.038 3.381 -31.268 31.708 hybrid contribution 0.329 0.000 0.627 0.708 sum 4.367 3.381 -30.641 31.135 Atomic orbital electron populations 1.20200 0.85775 1.04226 1.03366 1.23680 0.99245 0.88696 1.02620 1.22533 0.91193 1.01266 1.09151 1.25583 0.99912 0.84197 1.03612 1.21183 0.88350 0.98451 0.92595 1.65229 1.31251 1.24868 1.00696 1.23003 1.01729 0.91030 0.94203 1.22515 1.01126 0.97196 0.95914 1.22302 0.97157 0.98206 0.94477 0.88865 1.21212 0.95406 1.01486 0.81152 1.45912 1.10202 1.74964 1.07874 1.20290 0.86090 0.75781 0.86236 1.90699 1.16555 1.48574 1.83661 1.23273 1.04650 1.05328 0.94187 1.84789 1.09244 1.93985 1.03601 1.22315 0.96733 1.56015 0.91810 0.89374 1.24719 0.99153 0.93227 0.94241 1.69936 1.36398 1.46271 0.99080 0.86733 0.85154 0.80563 0.79389 1.19221 1.19935 1.15922 1.23509 0.93435 1.01378 0.91538 1.84865 1.21706 1.22793 1.67138 1.73864 0.89381 1.24224 1.19356 0.90140 0.90359 0.89773 0.81044 0.86884 0.88136 0.89572 0.92865 0.90894 0.90357 0.91363 0.91856 0.76627 0.88522 0.88424 0.91936 0.91961 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.48 36.01 0.38 -0.16 16 2 C 0.02 0.15 7.33 -82.10 -0.60 -0.45 16 3 C -0.22 -1.61 9.16 -39.38 -0.36 -1.97 16 4 C -0.07 -0.50 5.01 -35.30 -0.18 -0.68 16 5 C 0.12 0.63 6.06 -4.98 -0.03 0.60 16 6 N -0.50 -3.18 5.54 -231.65 -1.28 -4.47 16 7 C 0.03 0.19 6.45 -2.75 -0.02 0.17 16 8 C -0.13 -0.97 6.20 -25.38 -0.16 -1.13 16 9 C -0.10 -0.78 3.12 -88.76 -0.28 -1.06 16 10 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 11 C 0.13 1.42 5.02 -4.04 -0.02 1.40 16 12 N -0.74 -9.08 5.40 -60.30 -0.33 -9.41 16 13 C 0.53 9.35 7.85 -10.99 -0.09 9.27 16 14 O -0.52 -11.25 15.86 5.56 0.09 -11.16 16 15 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 21 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C 0.03 0.20 5.68 -1.74 -0.01 0.19 16 26 O 0.10 1.02 10.30 17.15 0.18 1.20 16 27 N -0.36 -4.17 12.07 33.42 0.40 -3.76 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.42 6.33 -51.93 -0.33 0.09 16 36 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.40 3.82 8.33 -40.82 -0.34 3.48 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.06 0.49 4.86 -51.93 -0.25 0.24 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -35.57 381.85 -8.86 -44.43 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.82 Total: -0.27 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.92 Total: -8.01 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.43 Total: -43.47 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.26 Total: -9.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.57 -8.86 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713522239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.160 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds