Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34332 * 126.43932 * 2 1 4 4 N 1.34487 * 107.66678 * 180.02562 * 3 2 1 5 5 C 1.30257 * 108.69674 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.61307 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47377 * 95.34076 * 6 5 4 8 8 C 1.46900 * 110.99950 * 285.46194 * 7 6 5 9 9 C 1.52994 * 109.47094 * 170.00234 * 8 7 6 10 10 N 1.46502 * 109.47449 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00411 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00085 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00063 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47099 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99789 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00354 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99612 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00378 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47129 * 89.99601 * 19 17 15 21 21 H 1.48498 * 109.47082 * 209.99767 * 19 17 15 22 22 H 1.48505 * 109.46944 * 329.99895 * 19 17 15 23 23 C 1.46897 * 110.99963 * 161.50661 * 7 6 5 24 24 C 1.53003 * 117.49753 * 10.53847 * 23 7 6 25 25 C 1.53002 * 117.49736 * 301.87729 * 23 7 6 26 26 O 1.33968 * 108.76360 * 0.22327 * 5 4 3 27 27 H 1.09001 * 109.47052 * 89.98371 * 1 2 3 28 28 H 1.09005 * 109.47020 * 209.97762 * 1 2 3 29 29 H 1.09003 * 109.47696 * 329.97551 * 1 2 3 30 30 H 1.07994 * 126.16922 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46803 * 335.33476 * 6 5 4 32 32 H 1.09003 * 109.46538 * 215.34355 * 6 5 4 33 33 H 1.08998 * 109.47372 * 49.99929 * 8 7 6 34 34 H 1.08999 * 109.46608 * 289.99780 * 8 7 6 35 35 H 1.08997 * 109.47985 * 59.99451 * 9 8 7 36 36 H 1.09009 * 109.47124 * 299.99437 * 9 8 7 37 37 H 0.97001 * 119.99325 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47079 * 299.99408 * 13 11 10 39 39 H 1.08998 * 109.47358 * 59.99812 * 13 11 10 40 40 H 0.96997 * 120.00208 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.55170 * 156.21167 * 23 7 6 42 42 H 1.08988 * 117.49944 * 0.02562 * 24 23 7 43 43 H 1.08998 * 117.49402 * 145.02517 * 24 23 7 44 44 H 1.09005 * 117.49731 * 214.98003 * 25 23 7 45 45 H 1.09002 * 117.49969 * 359.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 7 5.1239 -1.9252 1.3756 8 6 5.7212 -0.8048 2.1145 9 6 5.8140 -1.1645 3.5987 10 7 6.4091 -0.0470 4.3358 11 6 6.5898 -0.1385 5.6681 12 8 6.2593 -1.1459 6.2571 13 6 7.2024 1.0108 6.4262 14 16 7.3107 0.5860 8.1823 15 6 8.0412 2.0616 8.8096 16 1 8.2771 2.8747 8.1391 17 6 8.3146 2.1786 10.1654 18 7 8.0276 1.1874 10.9826 19 14 9.0884 3.7432 10.8306 20 1 8.0193 4.6987 11.2170 21 1 9.9162 3.4190 12.0201 22 1 9.9449 4.3558 9.7834 23 6 6.0063 -3.0995 1.3961 24 6 6.6221 -3.5438 0.0678 25 6 5.5055 -4.3716 0.7092 26 8 2.3074 -1.0839 -0.0064 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 1.9821 2.1113 -0.0004 31 1 5.6401 -0.9870 -0.4319 32 1 4.6061 -2.4262 -0.5979 33 1 5.0998 0.0825 1.9938 34 1 6.7198 -0.6047 1.7261 35 1 6.4354 -2.0518 3.7195 36 1 4.8153 -1.3647 3.9871 37 1 6.6730 0.7589 3.8647 38 1 8.2012 1.2107 6.0382 39 1 6.5812 1.8983 6.3051 40 1 8.2183 1.2693 11.9301 41 1 6.6106 -3.2178 2.2955 42 1 6.3728 -2.9646 -0.8211 43 1 7.6313 -3.9548 0.0935 44 1 5.7807 -5.3268 1.1565 45 1 4.5211 -4.3373 0.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714661978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = 25.387476 kcal Electronic energy + Delta-G solvation = -26018.070395 eV Core-core repulsion = 22165.014364 eV Total energy + Delta-G solvation = -3853.056031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62895 -39.74331 -38.90805 -35.45767 -34.99080 -34.05279 -32.72602 -32.40961 -30.59796 -29.03087 -27.15531 -25.50341 -25.23915 -23.23374 -22.76244 -22.47367 -21.54402 -20.43163 -20.11729 -17.94207 -17.64722 -17.18140 -16.51534 -16.30478 -16.12478 -15.82237 -15.13596 -14.93718 -14.78819 -14.76801 -14.23033 -13.99797 -13.76367 -13.57902 -13.53211 -13.13704 -12.99832 -12.85439 -12.62705 -12.50959 -12.22254 -11.87223 -11.75149 -11.59430 -11.56336 -11.05881 -11.02995 -11.00423 -10.84075 -10.75670 -10.72844 -9.79840 -9.39689 -9.05233 -9.03834 -8.84837 -8.70247 -8.21309 -6.47824 -6.19799 -3.90162 1.07399 2.23108 2.34286 2.91732 3.13476 3.21439 3.23802 3.30458 3.38788 3.47029 3.71659 3.96363 4.22240 4.29569 4.33410 4.50816 4.54164 4.57076 4.65423 4.74171 4.86923 4.91226 4.96603 5.03181 5.15254 5.17853 5.20384 5.24955 5.27516 5.42870 5.51196 5.57103 5.64028 5.71808 5.72582 5.78832 5.90761 5.94081 5.97118 6.16879 6.39918 6.48774 6.66932 7.41523 7.61487 7.72984 8.37192 8.64394 9.25446 10.87633 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002065 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.927653 B =13554.119690 C =14842.430925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.045 4.045 3 C -0.044 4.044 4 N -0.475 5.475 5 C 0.196 3.804 6 C 0.146 3.854 7 N -0.500 5.500 8 C 0.043 3.957 9 C 0.127 3.873 10 N -0.739 5.739 11 C 0.533 3.467 12 O -0.517 6.517 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.020 3.980 24 C -0.221 4.221 25 C -0.169 4.169 26 O -0.192 6.192 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.183 0.817 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 -5.362 -29.094 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.183 4.183 4 N -0.205 5.205 5 C -0.011 4.011 6 C 0.018 3.982 7 N -0.224 5.224 8 C -0.085 4.085 9 C 0.002 3.998 10 N -0.394 5.394 11 C 0.319 3.681 12 O -0.391 6.391 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.260 4.260 25 C -0.207 4.207 26 O -0.079 6.079 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.200 0.800 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.780 -6.931 -27.676 30.500 hybrid contribution 1.024 2.478 -0.889 2.825 sum -9.756 -4.453 -28.565 30.512 Atomic orbital electron populations 1.20292 0.83945 1.04656 1.03711 1.23527 0.95154 0.84595 1.06559 1.23076 0.87707 1.00423 1.07065 1.70428 1.23331 1.09064 1.17692 1.25914 0.84214 0.89938 1.01024 1.20472 0.89130 0.97075 0.91512 1.61528 1.43398 1.05403 1.12023 1.22365 0.98981 0.93688 0.93463 1.21153 0.99504 0.89736 0.89360 1.45904 1.65911 1.19398 1.08176 1.20284 0.77847 0.88807 0.81182 1.90705 1.49024 1.31516 1.67812 1.23527 1.03051 0.99131 1.04637 1.85399 1.81418 1.24272 0.92294 1.22871 1.47196 1.02396 0.95851 0.90924 1.24997 0.95414 0.97411 0.95811 1.70018 1.45061 1.30984 1.04243 0.86166 0.79053 0.81818 0.78446 1.20273 1.20763 1.19701 1.22788 0.97999 0.91089 0.96970 1.23652 0.99170 1.05498 0.97663 1.23139 0.98667 0.95419 1.03477 1.84392 1.17702 1.36449 1.69325 0.89837 0.90177 0.88832 0.79963 0.89454 0.87458 0.89184 0.93128 0.91535 0.90867 0.76857 0.89202 0.89201 0.92198 0.85006 0.88399 0.88215 0.87888 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.43 36.00 0.38 0.04 16 2 C -0.04 -0.40 7.39 -35.69 -0.26 -0.66 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.48 -5.35 10.79 -11.10 -0.12 -5.47 16 5 C 0.20 2.03 7.18 -12.94 -0.09 1.94 16 6 C 0.15 1.15 4.25 -4.97 -0.02 1.13 16 7 N -0.50 -4.53 4.65 -228.09 -1.06 -5.59 16 8 C 0.04 0.42 4.90 -3.83 -0.02 0.40 16 9 C 0.13 1.60 5.67 -4.04 -0.02 1.57 16 10 N -0.74 -10.33 5.56 -60.30 -0.33 -10.67 16 11 C 0.53 10.24 7.85 -10.99 -0.09 10.16 16 12 O -0.52 -12.05 15.86 5.56 0.09 -11.97 16 13 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 15 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 C 0.02 0.16 5.83 -67.71 -0.39 -0.24 16 24 C -0.22 -1.33 9.56 -26.69 -0.26 -1.58 16 25 C -0.17 -1.13 9.91 -26.69 -0.26 -1.39 16 26 O -0.19 -2.06 10.78 5.37 0.06 -2.00 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.09 0.60 7.82 -51.93 -0.41 0.20 16 32 H 0.11 0.67 5.62 -51.93 -0.29 0.38 16 33 H 0.09 0.98 6.98 -51.93 -0.36 0.62 16 34 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.86 6.40 -51.93 -0.33 0.52 16 36 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.13 1.11 6.34 -51.93 -0.33 0.78 16 42 H 0.10 0.50 6.02 -51.94 -0.31 0.19 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.65 7.47 -51.93 -0.39 0.26 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -36.69 390.78 -9.36 -46.04 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.54 Total: 2.01 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.83 Total: -5.28 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.78 Total: -47.38 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.15 Total: -13.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.69 -9.36 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714661978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.432 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds