Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34332 * 126.43932 * 2 1 4 4 N 1.34487 * 107.66678 * 180.02562 * 3 2 1 5 5 C 1.30257 * 108.69674 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.61307 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47377 * 95.34076 * 6 5 4 8 8 C 1.46900 * 110.99950 * 285.46194 * 7 6 5 9 9 C 1.52994 * 109.47094 * 170.00234 * 8 7 6 10 10 N 1.46502 * 109.47449 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00411 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00085 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00063 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47099 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99789 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00354 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99612 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00378 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47129 * 89.99601 * 19 17 15 21 21 H 1.48498 * 109.47082 * 209.99767 * 19 17 15 22 22 H 1.48505 * 109.46944 * 329.99895 * 19 17 15 23 23 C 1.46897 * 110.99963 * 161.50661 * 7 6 5 24 24 C 1.53003 * 117.49753 * 10.53847 * 23 7 6 25 25 C 1.53002 * 117.49736 * 301.87729 * 23 7 6 26 26 O 1.33968 * 108.76360 * 0.22327 * 5 4 3 27 27 H 1.09001 * 109.47052 * 89.98371 * 1 2 3 28 28 H 1.09005 * 109.47020 * 209.97762 * 1 2 3 29 29 H 1.09003 * 109.47696 * 329.97551 * 1 2 3 30 30 H 1.07994 * 126.16922 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46803 * 335.33476 * 6 5 4 32 32 H 1.09003 * 109.46538 * 215.34355 * 6 5 4 33 33 H 1.08998 * 109.47372 * 49.99929 * 8 7 6 34 34 H 1.08999 * 109.46608 * 289.99780 * 8 7 6 35 35 H 1.08997 * 109.47985 * 59.99451 * 9 8 7 36 36 H 1.09009 * 109.47124 * 299.99437 * 9 8 7 37 37 H 0.97001 * 119.99325 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47079 * 299.99408 * 13 11 10 39 39 H 1.08998 * 109.47358 * 59.99812 * 13 11 10 40 40 H 0.96997 * 120.00208 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.55170 * 156.21167 * 23 7 6 42 42 H 1.08988 * 117.49944 * 0.02562 * 24 23 7 43 43 H 1.08998 * 117.49402 * 145.02517 * 24 23 7 44 44 H 1.09005 * 117.49731 * 214.98003 * 25 23 7 45 45 H 1.09002 * 117.49969 * 359.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5765 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 7 5.1239 -1.9252 1.3756 8 6 5.7212 -0.8048 2.1145 9 6 5.8140 -1.1645 3.5987 10 7 6.4091 -0.0470 4.3358 11 6 6.5898 -0.1385 5.6681 12 8 6.2593 -1.1459 6.2571 13 6 7.2024 1.0108 6.4262 14 16 7.3107 0.5860 8.1823 15 6 8.0412 2.0616 8.8096 16 1 8.2771 2.8747 8.1391 17 6 8.3146 2.1786 10.1654 18 7 8.0276 1.1874 10.9826 19 14 9.0884 3.7432 10.8306 20 1 8.0193 4.6987 11.2170 21 1 9.9162 3.4190 12.0201 22 1 9.9449 4.3558 9.7834 23 6 6.0063 -3.0995 1.3961 24 6 6.6221 -3.5438 0.0678 25 6 5.5055 -4.3716 0.7092 26 8 2.3074 -1.0839 -0.0064 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 1.9821 2.1113 -0.0004 31 1 5.6401 -0.9870 -0.4319 32 1 4.6061 -2.4262 -0.5979 33 1 5.0998 0.0825 1.9938 34 1 6.7198 -0.6047 1.7261 35 1 6.4354 -2.0518 3.7195 36 1 4.8153 -1.3647 3.9871 37 1 6.6730 0.7589 3.8647 38 1 8.2012 1.2107 6.0382 39 1 6.5812 1.8983 6.3051 40 1 8.2183 1.2693 11.9301 41 1 6.6106 -3.2178 2.2955 42 1 6.3728 -2.9646 -0.8211 43 1 7.6313 -3.9548 0.0935 44 1 5.7807 -5.3268 1.1565 45 1 4.5211 -4.3373 0.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714661978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -3.148132 kcal Electronic energy + Delta-G solvation = -26019.307792 eV Core-core repulsion = 22165.014364 eV Total energy + Delta-G solvation = -3854.293428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.32925 -40.78644 -40.02148 -36.45535 -35.79161 -34.90044 -34.58444 -33.41173 -31.76081 -30.14648 -28.09027 -27.59654 -25.94787 -24.06225 -23.38002 -23.12367 -22.24242 -21.83835 -20.86816 -19.83485 -18.47247 -17.97373 -17.72553 -17.34026 -17.03100 -16.93390 -16.87945 -16.33444 -15.92510 -15.56782 -15.43005 -15.12149 -14.71267 -14.65654 -14.36225 -14.14936 -13.93226 -13.74485 -13.60592 -13.37693 -13.16851 -13.14367 -12.89691 -12.80253 -12.61164 -12.42039 -12.35595 -12.31263 -11.76372 -11.73222 -11.57332 -11.29087 -11.14373 -11.02249 -10.28427 -10.16690 -9.68913 -9.33098 -8.67345 -8.34684 -6.13049 0.38974 1.25262 1.42700 1.45351 1.54726 1.58152 1.59060 1.69847 2.12403 2.27336 2.70735 2.90085 2.99349 3.21992 3.33186 3.60822 3.76862 3.87194 3.91740 4.00282 4.02544 4.04588 4.13574 4.14431 4.28362 4.29818 4.43533 4.46370 4.49986 4.65795 4.67205 4.74988 4.79733 4.85625 4.90290 5.02424 5.08061 5.18197 5.24564 5.31792 5.35158 5.41937 5.73530 5.86834 6.19924 6.45190 6.70720 7.06443 7.20074 8.74598 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002065 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.927653 B =13554.119690 C =14842.430925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.048 4.048 3 C -0.065 4.065 4 N -0.498 5.498 5 C 0.183 3.817 6 C 0.150 3.850 7 N -0.512 5.512 8 C 0.058 3.942 9 C 0.131 3.869 10 N -0.712 5.712 11 C 0.535 3.465 12 O -0.565 6.565 13 C -0.129 4.129 14 S -0.152 6.152 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.258 1.258 23 C 0.002 3.998 24 C -0.203 4.203 25 C -0.170 4.170 26 O -0.209 6.209 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.203 0.797 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.416 0.584 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -3.877 -31.295 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.203 4.203 4 N -0.228 5.228 5 C -0.024 4.024 6 C 0.022 3.978 7 N -0.236 5.236 8 C -0.070 4.070 9 C 0.007 3.993 10 N -0.367 5.367 11 C 0.321 3.679 12 O -0.443 6.443 13 C -0.280 4.280 14 S 0.075 5.925 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.182 1.182 23 C -0.106 4.106 24 C -0.242 4.242 25 C -0.207 4.207 26 O -0.096 6.096 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.220 0.780 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.458 -5.427 -29.945 32.180 hybrid contribution 0.840 1.969 -0.335 2.167 sum -9.618 -3.458 -30.280 31.958 Atomic orbital electron populations 1.20491 0.81334 1.05516 1.05126 1.24264 0.96637 0.84025 1.05215 1.23509 0.87430 1.01674 1.07694 1.70401 1.24373 1.09663 1.18364 1.26383 0.84723 0.90125 1.01132 1.20593 0.88641 0.97616 0.90941 1.61450 1.43911 1.05354 1.12854 1.22144 0.99810 0.93662 0.91392 1.21178 0.97992 0.89128 0.90977 1.45622 1.64124 1.20496 1.06462 1.20069 0.77602 0.87692 0.82565 1.90695 1.51346 1.33079 1.69155 1.23362 1.04982 1.00194 0.99438 1.85589 1.81895 1.26001 0.98966 1.23203 1.47189 1.02407 0.96563 0.89866 1.26150 0.95745 1.01289 0.96074 1.70184 1.46375 1.33553 1.04675 0.84938 0.78222 0.76837 0.77877 1.19320 1.20264 1.18153 1.22766 0.98812 0.91265 0.97785 1.23697 0.99237 1.04440 0.96801 1.23191 0.99125 0.95112 1.03301 1.84396 1.18180 1.37383 1.69596 0.88026 0.90109 0.87109 0.78028 0.88230 0.85870 0.90075 0.91381 0.91663 0.93078 0.74699 0.86951 0.87248 0.91981 0.85984 0.87151 0.87531 0.87535 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.43 71.23 0.74 0.20 16 2 C -0.05 -0.81 7.39 24.79 0.18 -0.63 16 3 C -0.07 -1.18 11.80 83.39 0.98 -0.19 16 4 N -0.50 -10.82 10.79 -303.82 -3.28 -14.10 16 5 C 0.18 3.65 7.18 88.34 0.63 4.28 16 6 C 0.15 2.14 4.25 85.56 0.36 2.50 16 7 N -0.51 -8.72 4.65 -875.53 -4.07 -12.79 16 8 C 0.06 1.06 4.90 86.30 0.42 1.48 16 9 C 0.13 3.25 5.67 86.38 0.49 3.74 16 10 N -0.71 -19.08 5.56 -463.07 -2.57 -21.65 16 11 C 0.53 20.42 7.85 87.66 0.69 21.11 16 12 O -0.56 -27.04 15.86 -3.03 -0.05 -27.08 16 13 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 14 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 15 C -0.55 -31.45 9.50 67.96 0.65 -30.81 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 19 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 C 0.00 0.03 5.83 44.92 0.26 0.29 16 24 C -0.20 -2.00 9.56 30.62 0.29 -1.71 16 25 C -0.17 -2.03 9.91 30.62 0.30 -1.72 16 26 O -0.21 -4.35 10.78 -3.68 -0.04 -4.39 16 27 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.10 1.16 7.82 -2.39 -0.02 1.14 16 32 H 0.12 1.32 5.62 -2.39 -0.01 1.30 16 33 H 0.08 1.67 6.98 -2.39 -0.02 1.65 16 34 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.07 1.68 6.40 -2.39 -0.02 1.66 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.42 8.25 8.47 -92.71 -0.79 7.47 16 38 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 39 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.12 2.01 6.34 -2.39 -0.02 1.99 16 42 H 0.11 0.82 6.02 -2.39 -0.01 0.81 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.10 1.17 7.47 -2.39 -0.02 1.15 16 Total: -1.00 -81.95 390.78 -1.71 -83.65 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.23 Total: 21.38 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 6.92 Total: -5.04 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -9.63 Total: -104.72 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.09 Total: -31.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -81.95 -1.71 -83.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714661978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.506 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds