Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34326 * 126.44575 * 2 1 4 4 N 1.34481 * 107.67034 * 179.97438 * 3 2 1 5 5 C 1.30261 * 108.69605 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.61187 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46785 * 195.02585 * 6 5 4 8 8 C 1.53001 * 109.47020 * 75.03134 * 6 5 4 9 9 N 1.46892 * 109.47569 * 315.02673 * 6 5 4 10 10 C 1.46901 * 111.00299 * 204.99959 * 9 6 5 11 11 C 1.50700 * 109.47439 * 180.02562 * 10 9 6 12 12 C 1.30997 * 120.00342 * 127.26874 * 11 10 9 13 13 C 1.50696 * 119.99576 * 7.30427 * 12 11 10 14 14 N 1.46500 * 109.46918 * 127.12702 * 13 12 11 15 15 C 1.34778 * 119.99948 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00247 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00069 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.47216 * 179.97438 * 17 15 14 19 19 C 1.76189 * 99.99697 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00749 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99685 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99960 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99901 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47317 * 90.00177 * 23 21 19 25 25 H 1.48506 * 109.46848 * 209.99864 * 23 21 19 26 26 H 1.48498 * 109.47242 * 329.99803 * 23 21 19 27 27 O 1.33961 * 108.76202 * 0.22773 * 5 4 3 28 28 H 1.09002 * 109.46699 * 90.02256 * 1 2 3 29 29 H 1.08999 * 109.47385 * 210.02188 * 1 2 3 30 30 H 1.08997 * 109.46811 * 330.02701 * 1 2 3 31 31 H 1.07995 * 126.16437 * 359.94976 * 3 2 1 32 32 H 1.08999 * 109.46893 * 299.99384 * 8 6 5 33 33 H 1.08999 * 109.47423 * 59.99718 * 8 6 5 34 34 H 1.09004 * 109.47227 * 179.97438 * 8 6 5 35 35 H 1.00898 * 111.00060 * 328.95609 * 9 6 5 36 36 H 1.09011 * 109.46730 * 60.00098 * 10 9 6 37 37 H 1.08996 * 109.47225 * 300.00295 * 10 9 6 38 38 H 1.08008 * 119.99688 * 307.26502 * 11 10 9 39 39 H 1.07997 * 119.99852 * 187.58317 * 12 11 10 40 40 H 1.09003 * 109.47259 * 247.12684 * 13 12 11 41 41 H 1.08999 * 109.47465 * 7.12809 * 13 12 11 42 42 H 0.96999 * 120.00333 * 0.02562 * 14 13 12 43 43 H 1.08999 * 109.47011 * 299.99540 * 17 15 14 44 44 H 1.08999 * 109.47048 * 59.99720 * 17 15 14 45 45 H 0.97007 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5783 0.6477 0.0006 5 6 3.5765 -0.6549 0.0015 6 6 4.8004 -1.5341 0.0018 7 1 4.5163 -2.5523 -0.2639 8 6 5.4323 -1.5281 1.3952 9 7 5.7695 -1.0248 -0.9776 10 6 6.6585 -2.0968 -1.4450 11 6 7.6370 -1.5376 -2.4455 12 6 8.9225 -1.7294 -2.2823 13 6 9.4151 -2.6443 -1.1908 14 7 10.3233 -3.6415 -1.7624 15 6 10.8904 -4.5706 -0.9676 16 8 10.6491 -4.5808 0.2209 17 6 11.8252 -5.5962 -1.5555 18 16 12.4179 -6.6942 -0.2443 19 6 13.4582 -7.7605 -1.1852 20 1 13.5631 -7.6112 -2.2497 21 6 14.1429 -8.7923 -0.5583 22 7 14.9197 -9.5893 -1.2613 23 14 13.9610 -9.0509 1.2827 24 1 12.8294 -9.9766 1.5431 25 1 15.2134 -9.6349 1.8266 26 1 13.6957 -7.7470 1.9419 27 8 2.3075 -1.0840 -0.0035 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.9823 2.1111 -0.0008 32 1 5.7164 -0.5098 1.6609 33 1 4.7132 -1.9060 2.1219 34 1 6.3173 -2.1644 1.3956 35 1 5.3007 -0.5802 -1.7525 36 1 6.0656 -2.8813 -1.9155 37 1 7.2036 -2.5122 -0.5975 38 1 7.2782 -0.9786 -3.2973 39 1 9.6293 -1.2284 -2.9270 40 1 9.9444 -2.0599 -0.4382 41 1 8.5664 -3.1484 -0.7287 42 1 10.5172 -3.6327 -2.7128 43 1 11.2961 -6.1809 -2.3080 44 1 12.6737 -5.0917 -2.0177 45 1 15.3985 -10.3102 -0.8232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715789231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -19.966130 kcal Electronic energy + Delta-G solvation = -25104.864534 eV Core-core repulsion = 21249.841823 eV Total energy + Delta-G solvation = -3855.022711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.40568 -40.66399 -38.76842 -36.85028 -35.72296 -34.67844 -34.58859 -33.16463 -31.58297 -30.65256 -27.92817 -27.85325 -27.00047 -25.65823 -24.34945 -22.69148 -21.84469 -21.60850 -20.30081 -19.61612 -18.25598 -17.87002 -17.83265 -17.40039 -17.13547 -16.99574 -16.61890 -16.13664 -15.80990 -15.56683 -15.46610 -14.92925 -14.91323 -14.72024 -14.45220 -14.22217 -14.00452 -13.88370 -13.60297 -13.40061 -13.33595 -13.26013 -13.17808 -12.99623 -12.83800 -12.61978 -12.38147 -12.34547 -11.86428 -11.67764 -11.52483 -11.16199 -11.09323 -10.52541 -10.42096 -10.00829 -9.69579 -9.46896 -8.98306 -8.50712 -6.21311 0.34685 0.91019 1.09674 1.32147 1.48448 1.53316 1.58165 1.61424 1.63957 2.25581 2.40366 2.75294 2.87710 2.93616 3.15613 3.71164 3.77251 3.93030 3.97817 4.01489 4.06224 4.12843 4.24501 4.30053 4.38926 4.40241 4.49241 4.55185 4.62246 4.64890 4.72197 4.76073 4.83063 4.98070 5.01511 5.14537 5.20443 5.31126 5.37593 5.57978 5.71558 5.75461 5.83664 6.12333 6.20184 6.50357 6.70931 6.94658 7.21383 8.61651 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.001570 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.321723 B =17828.712476 C =18520.534135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.046 4.046 3 C -0.065 4.065 4 N -0.480 5.480 5 C 0.166 3.834 6 C 0.188 3.812 7 H 0.082 0.918 8 C -0.134 4.134 9 N -0.666 5.666 10 C 0.069 3.931 11 C -0.123 4.123 12 C -0.161 4.161 13 C 0.139 3.861 14 N -0.707 5.707 15 C 0.534 3.466 16 O -0.564 6.564 17 C -0.111 4.111 18 S -0.176 6.176 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 O -0.216 6.216 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.206 0.794 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.349 0.651 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.417 0.583 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.836 23.074 -2.655 37.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 C -0.203 4.203 4 N -0.210 5.210 5 C -0.041 4.041 6 C 0.078 3.922 7 H 0.099 0.901 8 C -0.193 4.193 9 N -0.300 5.300 10 C -0.059 4.059 11 C -0.142 4.142 12 C -0.180 4.180 13 C 0.016 3.984 14 N -0.361 5.361 15 C 0.319 3.681 16 O -0.442 6.442 17 C -0.262 4.262 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.161 1.161 27 O -0.103 6.103 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.223 0.777 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.169 0.831 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -29.165 23.458 -0.230 37.429 hybrid contribution -0.372 -1.286 -1.873 2.302 sum -29.537 22.172 -2.103 36.993 Atomic orbital electron populations 1.20519 0.80967 1.05782 1.05145 1.24335 0.96624 0.83890 1.05082 1.23638 0.87279 1.01837 1.07576 1.70432 1.24027 1.09460 1.17033 1.26386 0.84416 0.90589 1.02754 1.19831 0.82718 0.93456 0.96207 0.90069 1.21789 1.01156 1.03241 0.93096 1.60545 1.21393 1.29814 1.18296 1.21378 0.94431 0.92262 0.97802 1.22777 0.93687 0.99572 0.98166 1.22755 0.96846 0.99287 0.99123 1.20526 0.92999 0.89119 0.95725 1.45722 1.47362 1.30643 1.12393 1.19971 0.80200 0.81605 0.86313 1.90690 1.62665 1.73742 1.17105 1.23278 1.02000 0.98790 1.02165 1.84712 1.58792 1.36121 1.15342 1.22473 1.31380 1.17105 0.96759 0.91934 1.25552 0.93282 0.94085 1.02969 1.70017 1.29036 1.18180 1.38275 0.85874 0.79131 0.81179 0.80232 1.18683 1.18364 1.16079 1.84398 1.18029 1.37748 1.70077 0.88292 0.89861 0.86665 0.77697 0.92065 0.91499 0.90563 0.83141 0.92991 0.89699 0.84737 0.84318 0.91879 0.90842 0.74545 0.86765 0.86764 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 71.24 0.74 0.46 16 2 C -0.05 -0.63 7.39 24.79 0.18 -0.44 16 3 C -0.07 -0.99 11.80 83.39 0.98 -0.01 16 4 N -0.48 -9.91 11.28 -303.84 -3.43 -13.34 16 5 C 0.17 3.14 6.84 88.34 0.60 3.74 16 6 C 0.19 3.03 3.16 44.17 0.14 3.17 16 7 H 0.08 1.13 7.80 -2.39 -0.02 1.11 16 8 C -0.13 -2.23 9.40 71.98 0.68 -1.55 16 9 N -0.67 -10.31 6.28 -499.47 -3.14 -13.44 16 10 C 0.07 0.96 5.57 85.56 0.48 1.44 16 11 C -0.12 -1.52 9.77 25.65 0.25 -1.27 16 12 C -0.16 -2.20 9.63 25.65 0.25 -1.95 16 13 C 0.14 2.82 5.76 85.63 0.49 3.32 16 14 N -0.71 -16.16 5.55 -466.78 -2.59 -18.75 16 15 C 0.53 18.03 7.85 87.66 0.69 18.72 16 16 O -0.56 -23.86 15.86 -3.03 -0.05 -23.91 16 17 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 18 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 19 C -0.53 -30.79 10.04 67.96 0.68 -30.11 16 20 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.73 5.50 84.86 0.47 3.20 16 22 N -0.92 -55.82 13.97 21.65 0.30 -55.52 16 23 Si 0.91 45.01 27.74 68.60 1.90 46.91 16 24 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 27 O -0.22 -3.94 10.77 -3.66 -0.04 -3.98 16 28 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.24 7.45 -2.38 -0.02 1.22 16 35 H 0.35 5.16 8.34 -89.70 -0.75 4.41 16 36 H 0.05 0.65 8.06 -2.38 -0.02 0.64 16 37 H 0.09 1.40 4.59 -2.39 -0.01 1.39 16 38 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.59 5.29 -2.39 -0.01 1.58 16 42 H 0.42 6.79 8.46 -92.71 -0.78 6.01 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 45 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -78.42 395.88 -1.56 -79.98 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.55 Total: 16.95 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 7.07 Total: -4.99 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -8.85 Total: -101.05 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.09 Total: -27.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -78.42 -1.56 -79.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715789231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.014 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds