Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30258 * 125.61842 * 2 1 4 4 C 1.34474 * 108.70323 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16970 * 179.97438 * 4 3 2 6 6 C 1.34330 * 107.66648 * 359.97438 * 4 3 2 7 7 C 1.50708 * 126.44297 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.47033 * 90.00108 * 7 6 4 9 9 C 1.46900 * 111.00153 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47343 * 179.97438 * 9 8 7 11 11 C 1.30999 * 119.99592 * 127.15436 * 10 9 8 12 12 C 1.50700 * 120.00228 * 7.56915 * 11 10 9 13 13 N 1.46497 * 109.47559 * 127.00102 * 12 11 10 14 14 C 1.34780 * 120.00278 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99611 * 0.02562 * 14 13 12 16 16 C 1.50693 * 119.99998 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46964 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99888 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00422 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00231 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99924 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47216 * 89.99725 * 22 20 18 24 24 H 1.48503 * 109.47199 * 209.99778 * 22 20 18 25 25 H 1.48498 * 109.47099 * 329.99738 * 22 20 18 26 26 O 1.33967 * 125.62134 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46719 * 90.03025 * 1 2 3 28 28 H 1.08994 * 109.46896 * 210.02802 * 1 2 3 29 29 H 1.08999 * 109.47466 * 330.03168 * 1 2 3 30 30 H 1.09003 * 109.47308 * 89.97336 * 5 4 3 31 31 H 1.08998 * 109.47703 * 209.97019 * 5 4 3 32 32 H 1.09001 * 109.47430 * 329.97683 * 5 4 3 33 33 H 1.08998 * 109.47155 * 210.00289 * 7 6 4 34 34 H 1.08998 * 109.46893 * 330.00178 * 7 6 4 35 35 H 1.00902 * 110.99622 * 303.95606 * 8 7 6 36 36 H 1.08998 * 109.47376 * 300.00246 * 9 8 7 37 37 H 1.09003 * 109.46642 * 59.99776 * 9 8 7 38 38 H 1.08002 * 120.00247 * 307.16102 * 10 9 8 39 39 H 1.07998 * 120.00102 * 187.55861 * 11 10 9 40 40 H 1.09006 * 109.47078 * 247.00217 * 12 11 10 41 41 H 1.08998 * 109.47313 * 6.99490 * 12 11 10 42 42 H 0.97001 * 119.99777 * 359.97438 * 13 12 11 43 43 H 1.09000 * 109.47670 * 300.00316 * 16 14 13 44 44 H 1.09000 * 109.47020 * 60.00598 * 16 14 13 45 45 H 0.97000 * 120.00356 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0002 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5548 0.0018 8 7 5.1917 -1.8396 1.3870 9 6 6.3840 -2.6968 1.4266 10 6 6.7617 -2.9661 2.8603 11 6 6.9272 -4.1981 3.2737 12 6 6.9087 -5.3340 2.2835 13 7 8.1198 -6.1424 2.4448 14 6 8.3203 -7.2200 1.6605 15 8 7.4982 -7.5201 0.8208 16 6 9.5663 -8.0511 1.8261 17 16 9.5439 -9.4154 0.6369 18 6 11.0692 -10.1991 1.0417 19 1 11.6914 -9.7966 1.8273 20 6 11.4712 -11.3340 0.3508 21 7 12.6109 -11.9192 0.6529 22 14 10.3954 -12.0298 -1.0085 23 1 10.7724 -11.4101 -2.3043 24 1 10.5880 -13.5002 -1.0884 25 1 8.9708 -11.7325 -0.7135 26 8 2.2873 -1.0890 0.0005 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5133 30 1 5.0470 1.7921 1.0278 31 1 5.5824 1.0790 -0.5126 32 1 4.5133 2.5021 -0.5147 33 1 4.5695 -2.4899 -0.5113 34 1 5.6080 -1.0443 -0.5125 35 1 5.3427 -0.9855 1.9026 36 1 6.1705 -3.6398 0.9234 37 1 7.2094 -2.1946 0.9219 38 1 6.8959 -2.1435 3.5471 39 1 7.0770 -4.3998 4.3240 40 1 6.0308 -5.9556 2.4600 41 1 6.8719 -4.9327 1.2708 42 1 8.7774 -5.9020 3.1161 43 1 10.4440 -7.4295 1.6489 44 1 9.6036 -8.4521 2.8390 45 1 12.8920 -12.7120 0.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716269400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = 3.110522 kcal Electronic energy + Delta-G solvation = -24918.967564 eV Core-core repulsion = 21064.945532 eV Total energy + Delta-G solvation = -3854.022032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.72694 -39.37875 -37.75571 -35.77552 -35.43296 -33.67379 -32.60192 -32.44316 -30.02968 -29.67623 -28.70369 -26.18351 -25.59682 -24.90020 -23.72771 -22.12679 -21.02294 -20.53278 -19.33173 -17.83004 -17.31849 -17.08489 -16.69145 -16.34331 -15.99287 -15.65726 -15.16729 -15.01335 -14.97272 -14.72403 -14.36738 -13.87304 -13.83668 -13.69574 -13.56649 -13.40653 -13.21026 -13.11823 -12.89539 -12.82531 -12.79233 -12.42102 -12.27732 -11.93982 -11.28364 -11.27596 -11.07270 -11.01199 -10.86759 -10.61785 -9.95695 -9.83428 -9.48407 -9.11868 -9.01195 -8.93280 -8.80553 -8.50966 -6.92700 -6.29672 -4.01499 0.97826 1.64641 2.21081 2.25658 2.80343 2.95908 3.31926 3.38605 3.50152 3.54781 3.70466 3.82573 4.25614 4.32519 4.33555 4.37009 4.52156 4.66253 4.74468 4.75049 4.87224 4.88437 4.94828 5.03060 5.05326 5.09452 5.12482 5.23913 5.26723 5.27372 5.34432 5.53052 5.59004 5.67977 5.68096 5.75992 5.94051 6.00414 6.14164 6.28919 6.36059 6.54817 6.75104 7.35227 7.60045 7.93338 8.40847 8.47196 9.16529 10.79530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.001541 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.423712 B =18159.997026 C =18760.607752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.193 3.807 3 N -0.485 5.485 4 C -0.007 4.007 5 C -0.073 4.073 6 C -0.042 4.042 7 C 0.142 3.858 8 N -0.679 5.679 9 C 0.072 3.928 10 C -0.137 4.137 11 C -0.157 4.157 12 C 0.140 3.860 13 N -0.733 5.733 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O -0.191 6.191 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.344 0.656 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.567 28.377 3.071 34.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.215 5.215 4 C -0.128 4.128 5 C -0.130 4.130 6 C -0.096 4.096 7 C 0.013 3.987 8 N -0.311 5.311 9 C -0.056 4.056 10 C -0.156 4.156 11 C -0.176 4.176 12 C 0.017 3.983 13 N -0.388 5.388 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 O -0.077 6.077 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.502 27.746 1.679 34.540 hybrid contribution 1.984 -0.003 0.617 2.077 sum -18.519 27.743 2.296 33.435 Atomic orbital electron populations 1.20275 0.81226 1.05239 1.04756 1.26264 0.96482 0.78673 0.99988 1.70357 1.01561 1.30380 1.19238 1.21536 0.93542 0.92073 1.05669 1.20146 0.91745 0.98213 1.02945 1.22906 0.83777 0.94271 1.08608 1.20251 0.89060 0.98297 0.91047 1.60460 1.36720 1.21851 1.12108 1.21279 0.90384 0.98582 0.95312 1.22631 0.99425 0.97073 0.96471 1.22874 1.01381 0.93742 0.99637 1.20434 0.88514 0.91031 0.98343 1.45938 1.23580 1.29225 1.40016 1.20303 0.87695 0.79983 0.80435 1.90702 1.45629 1.69170 1.33969 1.23278 0.97734 1.00922 1.05517 1.84792 1.31059 1.28651 1.47068 1.22320 1.04468 1.15311 1.24857 0.89382 1.24710 0.94693 0.95270 0.96600 1.69937 1.20493 1.20315 1.40939 0.86736 0.83366 0.79044 0.82717 1.19214 1.19928 1.15912 1.84414 1.16431 1.37433 1.69457 0.88870 0.89164 0.88090 0.90608 0.90829 0.90415 0.88606 0.91332 0.83774 0.88784 0.93684 0.86639 0.86137 0.90760 0.90528 0.76569 0.88474 0.88408 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.19 1.76 8.34 -12.95 -0.11 1.65 16 3 N -0.48 -5.11 11.29 -7.36 -0.08 -5.19 16 4 C -0.01 -0.07 7.11 -82.82 -0.59 -0.66 16 5 C -0.07 -0.43 10.22 36.00 0.37 -0.07 16 6 C -0.04 -0.39 6.90 -35.68 -0.25 -0.64 16 7 C 0.14 1.03 6.02 -4.97 -0.03 1.00 16 8 N -0.68 -4.97 6.48 -116.34 -0.75 -5.73 16 9 C 0.07 0.52 5.77 -4.98 -0.03 0.49 16 10 C -0.14 -0.95 9.77 -36.03 -0.35 -1.30 16 11 C -0.16 -1.23 9.63 -36.03 -0.35 -1.58 16 12 C 0.14 1.52 5.76 -5.20 -0.03 1.49 16 13 N -0.73 -9.05 5.55 -61.47 -0.34 -9.39 16 14 C 0.53 9.27 7.85 -10.99 -0.09 9.18 16 15 O -0.52 -11.13 15.86 5.55 0.09 -11.04 16 16 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 22 Si 0.86 21.74 27.74 -169.99 -4.71 17.02 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 O -0.19 -2.00 10.78 5.37 0.06 -1.94 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 7.16 -51.93 -0.37 -0.06 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.37 7.17 -51.93 -0.37 -0.01 16 35 H 0.34 2.13 8.72 -39.29 -0.34 1.79 16 36 H 0.09 0.80 5.30 -51.93 -0.28 0.53 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.87 5.29 -51.93 -0.27 0.59 16 42 H 0.40 3.78 8.46 -40.82 -0.35 3.44 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -36.75 396.71 -8.25 -45.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.63 Total: 1.02 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.63 Total: -4.43 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.40 Total: -46.02 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.15 Total: -12.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.75 -8.25 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716269400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.111 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds