Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30258 * 125.61823 * 2 1 4 4 C 1.34472 * 108.70247 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16629 * 180.02562 * 4 3 2 6 6 C 1.34327 * 107.67005 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44653 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.46947 * 89.98297 * 7 6 4 9 9 C 1.46898 * 110.99819 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.30995 * 120.00004 * 124.99945 * 10 9 8 12 12 C 1.50703 * 120.00126 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47293 * 124.99713 * 12 11 10 14 14 C 1.34777 * 120.00204 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00183 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47310 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00235 * 180.02562 * 17 16 14 19 19 H 1.08009 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31636 * 120.00000 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00164 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47317 * 89.99723 * 22 20 18 24 24 H 1.48497 * 109.47151 * 210.00217 * 22 20 18 25 25 H 1.48505 * 109.46672 * 329.99694 * 22 20 18 26 26 O 1.33964 * 125.62261 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46567 * 269.97188 * 1 2 3 28 28 H 1.09003 * 109.47188 * 29.97223 * 1 2 3 29 29 H 1.09000 * 109.46919 * 149.97707 * 1 2 3 30 30 H 1.08998 * 109.47177 * 269.97578 * 5 4 3 31 31 H 1.09005 * 109.46916 * 29.98023 * 5 4 3 32 32 H 1.09004 * 109.46850 * 149.97548 * 5 4 3 33 33 H 1.08999 * 109.47037 * 209.97802 * 7 6 4 34 34 H 1.09001 * 109.47192 * 329.98291 * 7 6 4 35 35 H 1.00900 * 110.99884 * 303.94768 * 8 7 6 36 36 H 1.08993 * 109.47440 * 299.99974 * 9 8 7 37 37 H 1.09006 * 109.47238 * 59.99841 * 9 8 7 38 38 H 1.07996 * 119.99762 * 305.00538 * 10 9 8 39 39 H 1.08000 * 120.00232 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.46995 * 245.00005 * 12 11 10 41 41 H 1.08996 * 109.46689 * 5.00090 * 12 11 10 42 42 H 0.97005 * 119.99882 * 0.02562 * 13 12 11 43 43 H 1.08997 * 109.47327 * 300.00131 * 16 14 13 44 44 H 1.09004 * 109.47055 * 59.99945 * 16 14 13 45 45 H 0.96995 * 119.99659 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0002 6 6 3.5699 -0.6755 -0.0015 7 6 4.7938 -1.5548 -0.0018 8 7 5.1914 -1.8411 1.3831 9 6 6.3844 -2.6973 1.4219 10 6 6.7618 -2.9684 2.8555 11 6 6.8868 -4.2020 3.2779 12 6 7.2636 -4.4731 4.7117 13 7 6.2638 -5.3534 5.3213 14 6 6.3954 -5.7335 6.6077 15 8 7.3413 -5.3463 7.2606 16 6 5.3673 -6.6395 7.2346 17 16 5.8206 -6.9662 8.9562 18 6 4.4884 -8.0179 9.4292 19 1 3.7177 -8.2675 8.7149 20 6 4.4299 -8.5263 10.7194 21 7 3.4348 -9.3124 11.0726 22 14 5.7632 -8.0950 11.9546 23 1 5.3781 -6.8631 12.6888 24 1 5.9271 -9.2140 12.9169 25 1 7.0445 -7.8652 11.2398 26 8 2.2873 -1.0890 -0.0005 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 5.0475 1.7914 -1.0278 31 1 4.5129 2.5024 0.5140 32 1 5.5821 1.0793 0.5135 33 1 4.5696 -2.4893 -0.5160 34 1 5.6081 -1.0437 -0.5154 35 1 5.3423 -0.9876 1.8997 36 1 6.1718 -3.6398 0.9174 37 1 7.2096 -2.1938 0.9183 38 1 6.9290 -2.1455 3.5347 39 1 6.7198 -5.0249 2.5987 40 1 8.2408 -4.9547 4.7456 41 1 7.3027 -3.5325 5.2610 42 1 5.5075 -5.6634 4.7989 43 1 4.3900 -6.1582 7.2009 44 1 5.3282 -7.5800 6.6848 45 1 3.3938 -9.6673 11.9743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716269401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -4.754380 kcal Electronic energy + Delta-G solvation = -24661.074623 eV Core-core repulsion = 20806.711543 eV Total energy + Delta-G solvation = -3854.363080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.74958 -39.28504 -37.65751 -35.76212 -35.47195 -33.74958 -32.60514 -32.42216 -30.19174 -29.71481 -28.74841 -26.58251 -25.58805 -24.35499 -23.10762 -22.15106 -21.09597 -20.65355 -19.93896 -17.87591 -17.31418 -17.26077 -16.44080 -16.22648 -16.14077 -15.45113 -15.28971 -15.12034 -14.94567 -14.65274 -14.11714 -13.91678 -13.84802 -13.80512 -13.57420 -13.45960 -13.20040 -13.13127 -12.89024 -12.78470 -12.66566 -12.43537 -12.27889 -11.86202 -11.47714 -11.30066 -11.25250 -10.99721 -10.89030 -10.59918 -9.99435 -9.82330 -9.46470 -9.12818 -8.99696 -8.93876 -8.87850 -8.48687 -6.90390 -6.27606 -3.99260 0.94812 1.66100 2.18862 2.23606 2.82793 2.98989 3.33801 3.40742 3.51715 3.52949 3.73711 3.74742 4.20252 4.28924 4.34428 4.34509 4.50923 4.64690 4.73820 4.75979 4.84766 4.90249 4.90570 5.02709 5.06660 5.09920 5.10661 5.11481 5.20167 5.27157 5.34058 5.43280 5.57462 5.64115 5.69454 5.79023 5.91782 6.03711 6.21907 6.22668 6.34283 6.56716 6.67992 7.33443 7.63266 7.95520 8.43105 8.50103 9.18575 10.81614 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.001565 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.977849 B =17886.907363 C =19184.967026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.196 3.804 3 N -0.485 5.485 4 C -0.006 4.006 5 C -0.072 4.072 6 C -0.046 4.046 7 C 0.145 3.855 8 N -0.682 5.682 9 C 0.088 3.912 10 C -0.140 4.140 11 C -0.154 4.154 12 C 0.150 3.850 13 N -0.733 5.733 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O -0.191 6.191 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.347 0.653 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.401 0.599 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 19.461 -29.355 35.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.215 5.215 4 C -0.127 4.127 5 C -0.129 4.129 6 C -0.100 4.100 7 C 0.016 3.984 8 N -0.315 5.315 9 C -0.039 4.039 10 C -0.159 4.159 11 C -0.174 4.174 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 O -0.078 6.078 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.166 0.834 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.235 0.765 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.047 20.026 -28.057 34.531 hybrid contribution -0.263 -0.638 -0.588 0.906 sum 1.785 19.388 -28.645 34.635 Atomic orbital electron populations 1.20294 0.81152 1.05139 1.04989 1.26287 0.96498 0.78609 0.99728 1.70364 1.01546 1.30376 1.19251 1.21546 0.93576 0.92072 1.05457 1.20127 0.91630 0.98271 1.02908 1.22886 0.83811 0.94265 1.09014 1.20219 0.89090 0.98052 0.91034 1.60477 1.36715 1.22251 1.12017 1.21040 0.90171 0.97968 0.94765 1.22697 0.99317 0.97453 0.96455 1.22914 1.00594 0.97379 0.96477 1.20267 0.92433 0.94858 0.89782 1.45941 1.28363 1.51897 1.12570 1.20301 0.86560 0.80494 0.81019 1.90699 1.32304 1.55051 1.61531 1.23278 1.00633 1.01331 1.02193 1.84776 1.37072 1.64562 1.05200 1.22324 1.09832 1.33249 1.01476 0.89369 1.24717 0.95629 0.93545 0.97449 1.69943 1.30370 1.31494 1.19897 0.86728 0.84033 0.78930 0.82116 1.19214 1.19951 1.15931 1.84405 1.16403 1.37483 1.69500 0.88654 0.88087 0.89208 0.90628 0.90250 0.91100 0.88823 0.91477 0.83443 0.89999 0.93750 0.86793 0.86518 0.90742 0.91239 0.76475 0.88449 0.88420 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.20 1.77 8.34 -12.94 -0.11 1.66 16 3 N -0.48 -5.08 11.29 -7.36 -0.08 -5.17 16 4 C -0.01 -0.05 7.11 -82.82 -0.59 -0.64 16 5 C -0.07 -0.40 10.05 36.01 0.36 -0.04 16 6 C -0.05 -0.40 6.90 -35.69 -0.25 -0.65 16 7 C 0.14 0.85 5.84 -4.97 -0.03 0.82 16 8 N -0.68 -4.49 6.48 -116.34 -0.75 -5.25 16 9 C 0.09 0.48 6.12 -4.97 -0.03 0.45 16 10 C -0.14 -0.96 9.38 -36.02 -0.34 -1.30 16 11 C -0.15 -1.21 9.24 -36.02 -0.33 -1.54 16 12 C 0.15 1.64 6.11 -5.19 -0.03 1.61 16 13 N -0.73 -9.46 5.55 -61.47 -0.34 -9.80 16 14 C 0.53 9.53 7.85 -10.99 -0.09 9.45 16 15 O -0.52 -11.36 15.86 5.55 0.09 -11.28 16 16 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.67 8.03 -52.48 -0.42 2.24 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.70 13.97 55.49 0.78 -25.93 16 22 Si 0.86 21.93 27.74 -169.99 -4.72 17.22 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 O -0.19 -1.92 10.78 5.36 0.06 -1.86 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.26 7.80 -51.93 -0.40 -0.15 16 35 H 0.35 2.15 8.71 -39.29 -0.34 1.80 16 36 H 0.08 0.43 7.79 -51.93 -0.40 0.03 16 37 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.11 0.78 7.84 -52.49 -0.41 0.37 16 39 H 0.12 0.78 7.84 -52.49 -0.41 0.37 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.82 7.79 -51.93 -0.40 0.41 16 42 H 0.40 4.14 8.46 -40.82 -0.35 3.79 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -37.22 402.10 -8.45 -45.67 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.93 Total: 0.36 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.61 Total: -4.38 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.40 Total: -46.14 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.15 Total: -13.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.22 -8.45 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716269401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.917 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds