Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34482 * 126.16594 * 2 1 4 4 C 1.30250 * 108.70165 * 180.02562 * 3 2 1 5 5 C 1.50693 * 125.61980 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47244 * 90.00031 * 5 4 3 7 7 C 1.46904 * 111.00580 * 186.95999 * 6 5 4 8 8 C 1.52999 * 115.55897 * 319.90056 * 7 6 5 9 9 N 1.46502 * 109.46938 * 278.64886 * 8 7 6 10 10 C 1.34782 * 119.99740 * 184.97956 * 9 8 7 11 11 O 1.21283 * 119.99807 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99980 * 179.97438 * 10 9 8 13 13 S 1.80998 * 109.47118 * 180.02562 * 12 10 9 14 14 C 1.76192 * 99.99869 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00634 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00189 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00168 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99701 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47261 * 89.99888 * 18 16 14 20 20 H 1.48502 * 109.47260 * 210.00314 * 18 16 14 21 21 H 1.48503 * 109.47312 * 330.00126 * 18 16 14 22 22 C 1.52998 * 117.49637 * 105.58311 * 7 6 5 23 23 C 1.52999 * 117.50041 * 174.20898 * 7 6 5 24 24 O 1.33966 * 108.76175 * 0.23045 * 4 3 2 25 25 C 1.34324 * 126.16447 * 180.02562 * 2 1 3 26 26 C 1.50695 * 126.44604 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.46964 * 89.96952 * 1 2 3 28 28 H 1.08998 * 109.47088 * 209.97086 * 1 2 3 29 29 H 1.09008 * 109.46773 * 329.97246 * 1 2 3 30 30 H 1.09000 * 109.47299 * 329.99950 * 5 4 3 31 31 H 1.09005 * 109.47245 * 210.00158 * 5 4 3 32 32 H 1.00896 * 110.99975 * 310.91908 * 6 5 4 33 33 H 1.09000 * 109.47348 * 38.64630 * 8 7 6 34 34 H 1.08995 * 109.46979 * 158.64598 * 8 7 6 35 35 H 0.96991 * 120.00029 * 4.97840 * 9 8 7 36 36 H 1.09001 * 109.46773 * 300.00148 * 12 10 9 37 37 H 1.09003 * 109.46632 * 60.00048 * 12 10 9 38 38 H 0.97003 * 119.99947 * 179.97438 * 17 16 14 39 39 H 1.09003 * 117.49980 * 214.98172 * 22 7 6 40 40 H 1.09003 * 117.49858 * 0.02562 * 22 7 6 41 41 H 1.08995 * 117.50073 * 0.02562 * 23 7 6 42 42 H 1.08996 * 117.49743 * 144.99843 * 23 7 6 43 43 H 1.09006 * 109.47410 * 90.00300 * 26 25 2 44 44 H 1.08999 * 109.47652 * 210.00688 * 26 25 2 45 45 H 1.09002 * 109.47409 * 330.00317 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0857 0.0000 4 6 3.5431 0.6948 -0.0006 5 6 4.7479 1.5999 -0.0013 6 7 5.1401 1.8943 1.3834 7 6 6.2068 2.9035 1.4254 8 6 7.2898 2.7643 0.3537 9 7 8.2631 1.7521 0.7715 10 6 9.3654 1.5300 0.0285 11 8 9.5514 2.1678 -0.9862 12 6 10.3669 0.4893 0.4586 13 16 11.7252 0.4289 -0.7362 14 6 12.7170 -0.8324 -0.0084 15 1 12.4010 -1.3057 0.9095 16 6 13.9046 -1.2179 -0.6147 17 7 14.6459 -2.1598 -0.0707 18 14 14.4510 -0.3999 -2.2027 19 1 15.2866 0.7863 -1.8865 20 1 15.2434 -1.3631 -3.0085 21 1 13.2571 0.0276 -2.9755 22 6 5.8236 4.3186 1.8628 23 6 6.6354 3.4217 2.7997 24 8 3.5734 -0.6445 -0.0060 25 6 2.2997 -1.0844 -0.0005 26 6 1.8493 -2.5225 -0.0006 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 4.5036 2.5296 -0.5152 31 1 5.5728 1.1065 -0.5155 32 1 4.3442 2.1864 1.9303 33 1 6.8322 2.4613 -0.5881 34 1 7.7948 3.7210 0.2210 35 1 8.1141 1.2418 1.5828 36 1 10.7597 0.7476 1.4420 37 1 9.8806 -0.4851 0.5060 38 1 15.4756 -2.4294 -0.4946 39 1 6.3430 5.1505 1.3871 40 1 4.7800 4.5007 2.1199 41 1 6.1262 3.0136 3.6727 42 1 7.6889 3.6631 2.9404 43 1 1.7404 -2.8691 -1.0283 44 1 2.5901 -3.1354 0.5130 45 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716676201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = 9.318650 kcal Electronic energy + Delta-G solvation = -26045.610404 eV Core-core repulsion = 22191.857576 eV Total energy + Delta-G solvation = -3853.752828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.66435 -39.85604 -38.50402 -35.50589 -34.82998 -33.95320 -32.72741 -32.42305 -29.88979 -29.58038 -27.72975 -26.55166 -25.55385 -24.54076 -22.84278 -21.96288 -20.97716 -20.35559 -20.14526 -17.87058 -17.33247 -17.20333 -16.56046 -16.34437 -16.02658 -15.46780 -15.09039 -14.97969 -14.87548 -14.34562 -14.09897 -13.95368 -13.77398 -13.62180 -13.41956 -13.37502 -13.24447 -12.99584 -12.78409 -12.72274 -12.48548 -12.16567 -11.92134 -11.85070 -11.42076 -11.28324 -11.24127 -10.99726 -10.85181 -10.70281 -10.57992 -9.84695 -9.54032 -9.03277 -8.98565 -8.91287 -8.70242 -8.48299 -6.89961 -6.27399 -3.98842 1.06103 2.20346 2.32330 2.73512 2.98619 3.13274 3.33819 3.37555 3.50410 3.52007 3.71988 3.87232 4.22360 4.29836 4.34443 4.36985 4.43946 4.55007 4.66144 4.77231 4.85349 4.95986 4.98182 5.11612 5.14032 5.16347 5.19869 5.27340 5.30333 5.31668 5.38743 5.40623 5.56170 5.60576 5.66882 5.76068 5.76136 5.80123 5.98560 6.05254 6.36401 6.51991 6.72215 7.40962 7.65754 7.95738 8.43645 8.50391 9.18800 10.81833 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.002264 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.939332 B =12361.943489 C =13820.162396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.021 4.021 3 N -0.475 5.475 4 C 0.193 3.807 5 C 0.153 3.847 6 N -0.642 5.642 7 C 0.034 3.966 8 C 0.159 3.841 9 N -0.729 5.729 10 C 0.531 3.469 11 O -0.523 6.523 12 C -0.123 4.123 13 S -0.142 6.142 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.095 3.905 17 N -0.881 5.881 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.235 1.235 22 C -0.200 4.200 23 C -0.155 4.155 24 O -0.188 6.188 25 C -0.044 4.044 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.352 0.648 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.270 0.730 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.551 6.549 4.696 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.141 4.141 3 N -0.205 5.205 4 C -0.014 4.014 5 C 0.024 3.976 6 N -0.273 5.273 7 C -0.058 4.058 8 C 0.034 3.966 9 N -0.383 5.383 10 C 0.317 3.683 11 O -0.398 6.398 12 C -0.274 4.274 13 S 0.084 5.916 14 C -0.668 4.668 15 H 0.106 0.894 16 C -0.114 4.114 17 N -0.517 5.517 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.159 1.159 22 C -0.240 4.240 23 C -0.193 4.193 24 O -0.074 6.074 25 C -0.098 4.098 26 C -0.126 4.126 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.172 0.828 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.240 0.760 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.795 7.536 3.009 29.916 hybrid contribution -0.153 -0.747 0.852 1.143 sum -28.948 6.789 3.861 29.983 Atomic orbital electron populations 1.20102 0.86456 1.03242 1.02826 1.21507 0.97935 0.87670 1.07010 1.70325 1.00440 1.31584 1.18186 1.25852 0.94819 0.79370 1.01343 1.20319 0.90351 0.95108 0.91824 1.60310 1.12755 1.44052 1.10224 1.21769 0.95247 0.90612 0.98217 1.20795 0.87565 0.93279 0.94913 1.45890 1.22414 1.41036 1.29002 1.20298 0.81273 0.83490 0.83287 1.90701 1.75725 1.48714 1.24619 1.23268 0.99082 1.00217 1.04801 1.84765 1.20923 1.52485 1.33447 1.22322 1.08545 1.22390 1.13554 0.89372 1.24720 0.95086 0.94100 0.97474 1.69939 1.13680 1.28529 1.39566 0.86731 0.81215 0.79948 0.83925 1.19227 1.19981 1.15925 1.23694 1.01405 0.94335 1.04553 1.23148 1.01561 1.01663 0.92881 1.84439 1.29927 1.23840 1.69194 1.23268 0.80854 0.98373 1.07276 1.20301 1.01986 0.86402 1.03897 0.90751 0.90746 0.90672 0.90050 0.87322 0.82842 0.91077 0.90283 0.76032 0.88491 0.88421 0.91968 0.87959 0.88351 0.88073 0.87561 0.89668 0.90059 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.22 36.01 0.37 -0.06 16 2 C -0.02 -0.21 7.11 -82.81 -0.59 -0.80 16 3 N -0.47 -5.48 11.29 -7.36 -0.08 -5.56 16 4 C 0.19 2.16 7.78 -12.95 -0.10 2.06 16 5 C 0.15 1.41 5.27 -4.98 -0.03 1.38 16 6 N -0.64 -5.44 6.80 -101.22 -0.69 -6.13 16 7 C 0.03 0.27 2.21 -131.60 -0.29 -0.02 16 8 C 0.16 1.70 5.31 -4.04 -0.02 1.67 16 9 N -0.73 -9.16 5.50 -60.29 -0.33 -9.50 16 10 C 0.53 9.29 7.85 -10.98 -0.09 9.20 16 11 O -0.52 -11.09 15.86 5.55 0.09 -11.00 16 12 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 13 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 14 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 15 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 16 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 17 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 18 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 22 C -0.20 -1.35 9.89 -26.73 -0.26 -1.62 16 23 C -0.15 -1.12 10.12 -26.73 -0.27 -1.39 16 24 O -0.19 -2.25 10.78 5.34 0.06 -2.19 16 25 C -0.04 -0.43 7.39 -35.69 -0.26 -0.69 16 26 C -0.07 -0.39 10.22 36.00 0.37 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.30 7.16 -51.93 -0.37 -0.07 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.11 1.08 6.80 -51.93 -0.35 0.72 16 32 H 0.35 2.81 8.47 -39.29 -0.33 2.47 16 33 H 0.07 0.78 5.96 -51.93 -0.31 0.48 16 34 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.40 4.37 8.48 -40.82 -0.35 4.03 16 36 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 37 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.31 7.17 -51.93 -0.37 -0.06 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -35.61 394.24 -8.41 -44.02 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.72 Total: 3.27 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.74 Total: -4.50 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.33 Total: -47.09 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.15 Total: -13.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.61 -8.41 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.334 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds