Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34483 * 126.16191 * 2 1 4 4 C 1.30255 * 108.69536 * 180.02562 * 3 2 1 5 5 O 1.33964 * 108.76670 * 359.72822 * 4 3 2 6 6 C 1.34325 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.44343 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47233 * 89.99369 * 7 6 2 9 9 C 1.46899 * 110.99765 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46960 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.99842 * 295.35823 * 10 9 8 12 12 C 1.54337 * 109.98839 * 174.31994 * 10 9 8 13 13 C 1.55155 * 103.01857 * 218.66550 * 12 10 9 14 14 C 1.54912 * 101.58314 * 35.31182 * 13 12 10 15 15 N 1.47030 * 109.87818 * 56.45601 * 10 9 8 16 16 C 1.34776 * 125.64594 * 298.39036 * 15 10 9 17 17 O 1.21280 * 120.00179 * 359.71977 * 16 15 10 18 18 C 1.50701 * 119.99720 * 179.72033 * 16 15 10 19 19 S 1.80995 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99705 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00133 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00126 * 24 22 20 28 28 H 1.09004 * 109.46970 * 270.00102 * 1 2 3 29 29 H 1.08993 * 109.47266 * 30.00139 * 1 2 3 30 30 H 1.09003 * 109.46780 * 150.00331 * 1 2 3 31 31 H 1.08011 * 125.61507 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46913 * 329.99620 * 7 6 2 33 33 H 1.09000 * 109.47490 * 209.99438 * 7 6 2 34 34 H 1.00901 * 111.00209 * 303.95352 * 8 7 6 35 35 H 1.09003 * 109.47580 * 60.00809 * 9 8 7 36 36 H 1.08997 * 109.47318 * 299.99886 * 9 8 7 37 37 H 1.09004 * 110.84898 * 100.20606 * 12 10 9 38 38 H 1.08994 * 110.66854 * 337.04999 * 12 10 9 39 39 H 1.08998 * 111.00829 * 277.23922 * 13 12 10 40 40 H 1.09000 * 111.04077 * 153.39825 * 13 12 10 41 41 H 1.09004 * 110.36780 * 204.15030 * 14 13 12 42 42 H 1.08998 * 110.46431 * 81.87614 * 14 13 12 43 43 H 1.08995 * 109.47138 * 59.99991 * 18 16 15 44 44 H 1.08998 * 109.47102 * 300.00238 * 18 16 15 45 45 H 0.97001 * 120.00200 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5430 0.6948 -0.0006 5 8 3.5734 -0.6445 0.0051 6 6 2.2997 -1.0844 0.0005 7 6 1.8494 -2.5225 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 1.2641 -4.3913 -1.4234 10 6 1.1230 -4.8412 -2.8790 11 1 0.3303 -4.2757 -3.3688 12 6 0.8005 -6.3494 -2.9362 13 6 1.6247 -6.8370 -4.1569 14 6 2.8894 -5.9484 -4.0533 15 7 2.3940 -4.6394 -3.5901 16 6 3.0073 -3.4547 -3.7816 17 8 2.5063 -2.4363 -3.3543 18 6 4.3158 -3.3955 -4.5269 19 16 4.8814 -1.6786 -4.6175 20 6 6.3837 -1.8982 -5.5117 21 1 6.6878 -2.8869 -5.8223 22 6 7.1759 -0.8003 -5.8179 23 7 6.8051 0.4047 -5.4398 24 14 8.7689 -1.0331 -6.7652 25 1 9.4241 0.2847 -6.9635 26 1 8.4743 -1.6427 -8.0869 27 1 9.6745 -1.9264 -5.9990 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 4.4065 1.3436 -0.0003 32 1 0.8913 -2.6032 0.5142 33 1 2.5900 -3.1352 0.5147 34 1 1.0701 -2.3983 -1.9010 35 1 0.3018 -4.4845 -0.9199 36 1 2.0003 -5.0171 -0.9190 37 1 -0.2648 -6.5124 -3.1002 38 1 1.1296 -6.8480 -2.0245 39 1 1.0910 -6.6499 -5.0887 40 1 1.8798 -7.8924 -4.0604 41 1 3.3651 -5.8503 -5.0291 42 1 3.5904 -6.3661 -3.3307 43 1 4.1778 -3.7866 -5.5349 44 1 5.0598 -3.9956 -4.0031 45 1 5.9780 0.5256 -4.9476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723885672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = 5.414215 kcal Electronic energy + Delta-G solvation = -27884.698122 eV Core-core repulsion = 24030.775985 eV Total energy + Delta-G solvation = -3853.922137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.03511 -39.97702 -37.08014 -36.11611 -34.84164 -32.46726 -32.18114 -31.61486 -30.07030 -28.65576 -27.78559 -25.49930 -24.78305 -23.83810 -22.27777 -21.97920 -21.25110 -20.50685 -18.90530 -18.14034 -17.08282 -16.85737 -16.42698 -16.35645 -15.67204 -15.04994 -14.65145 -14.48182 -14.36406 -14.15130 -13.83713 -13.76169 -13.46123 -13.33157 -13.24775 -12.94680 -12.85920 -12.51890 -12.31409 -12.26978 -11.90225 -11.78900 -11.65195 -11.54411 -11.42060 -11.21354 -10.97034 -10.88432 -10.75444 -10.25819 -10.14601 -9.48380 -9.10141 -8.95685 -8.58880 -8.48249 -8.12404 -7.90065 -6.56702 -6.56367 -3.91926 1.69742 2.89019 2.95522 3.05141 3.31219 3.37066 3.40508 3.57276 3.63465 4.14344 4.29535 4.36073 4.39002 4.57706 4.65983 4.85968 4.92960 4.97003 5.08205 5.14148 5.19953 5.24974 5.28000 5.32875 5.36977 5.46410 5.48923 5.54004 5.59492 5.61198 5.65002 5.67105 5.72701 5.84191 5.97138 6.02818 6.13826 6.14425 6.28118 6.54094 6.55837 7.00495 7.53344 7.86775 7.97307 7.97656 8.55846 8.83126 9.33342 10.87434 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008003 B = 0.004629 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.026923 B = 6047.500985 C = 9097.968903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.018 4.018 3 N -0.491 5.491 4 C 0.180 3.820 5 O -0.187 6.187 6 C -0.026 4.026 7 C 0.142 3.858 8 N -0.651 5.651 9 C 0.050 3.950 10 C 0.142 3.858 11 H 0.070 0.930 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.618 5.618 16 C 0.548 3.452 17 O -0.476 6.476 18 C -0.121 4.121 19 S -0.111 6.111 20 C -0.607 4.607 21 H 0.063 0.937 22 C 0.036 3.964 23 N -0.885 5.885 24 Si 1.082 2.918 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.247 0.753 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.358 0.642 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 -13.967 10.148 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 N -0.221 5.221 4 C -0.047 4.047 5 O -0.072 6.072 6 C -0.081 4.081 7 C 0.013 3.987 8 N -0.288 5.288 9 C -0.080 4.080 10 C 0.037 3.963 11 H 0.088 0.912 12 C -0.164 4.164 13 C -0.170 4.170 14 C -0.023 4.023 15 N -0.356 5.356 16 C 0.336 3.664 17 O -0.346 6.346 18 C -0.272 4.272 19 S 0.115 5.885 20 C -0.755 4.755 21 H 0.081 0.919 22 C -0.175 4.175 23 N -0.520 5.520 24 Si 0.908 3.092 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.910 -11.053 10.063 19.751 hybrid contribution -0.992 -2.730 0.235 2.914 sum -13.902 -13.783 10.298 22.120 Atomic orbital electron populations 1.20025 0.87161 1.03013 1.02101 1.21377 0.97584 0.87923 1.06980 1.70301 1.01461 1.31614 1.18709 1.27942 0.97373 0.79467 0.99880 1.84466 1.29821 1.24385 1.68540 1.22814 0.81123 0.97079 1.07045 1.20201 0.99205 0.87017 0.92261 1.60972 1.56161 1.02057 1.09637 1.22444 0.98319 0.90957 0.96265 1.21481 0.87390 0.95626 0.91777 0.91223 1.22636 1.00759 0.93833 0.99132 1.22758 0.96113 0.99520 0.98577 1.22243 0.96365 0.83677 1.00047 1.48402 1.23190 1.06310 1.57746 1.19657 0.85459 0.81821 0.79503 1.90600 1.65034 1.32626 1.46384 1.23258 0.96608 1.05557 1.01798 1.84771 1.27498 1.01797 1.74434 1.23721 1.08711 0.98691 1.44376 0.91895 1.25997 1.03004 0.91597 0.96873 1.70790 1.24497 1.22357 1.34323 0.83360 0.74086 0.76086 0.75633 1.20311 1.21213 1.21202 0.91263 0.90599 0.91520 0.73704 0.92809 0.89911 0.81913 0.94925 0.90978 0.90202 0.90486 0.90603 0.89990 0.90663 0.91792 0.89839 0.89763 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.05 36.00 0.36 -0.41 16 2 C -0.02 -0.28 7.11 -82.81 -0.59 -0.87 16 3 N -0.49 -8.50 11.29 -11.18 -0.13 -8.63 16 4 C 0.18 2.91 13.23 52.09 0.69 3.60 16 5 O -0.19 -3.35 10.78 5.37 0.06 -3.29 16 6 C -0.03 -0.42 6.90 -35.69 -0.25 -0.67 16 7 C 0.14 1.82 5.84 -4.97 -0.03 1.80 16 8 N -0.65 -9.23 3.31 -115.05 -0.38 -9.61 16 9 C 0.05 0.54 5.28 -3.82 -0.02 0.52 16 10 C 0.14 1.54 3.28 -66.94 -0.22 1.32 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.13 -0.91 6.48 -24.89 -0.16 -1.07 16 13 C -0.13 -0.99 7.09 -24.58 -0.17 -1.16 16 14 C 0.10 1.07 6.69 -2.53 -0.02 1.06 16 15 N -0.62 -8.60 3.06 -163.00 -0.50 -9.10 16 16 C 0.55 10.37 7.43 -10.99 -0.08 10.29 16 17 O -0.48 -10.20 12.02 5.56 0.07 -10.14 16 18 C -0.12 -2.57 5.16 36.01 0.19 -2.38 16 19 S -0.11 -3.06 19.60 -107.50 -2.11 -5.17 16 20 C -0.61 -17.86 9.50 30.94 0.29 -17.56 16 21 H 0.06 1.78 7.80 -52.49 -0.41 1.38 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.96 16 23 N -0.89 -27.91 13.67 55.49 0.76 -27.15 16 24 Si 1.08 25.37 29.92 -169.99 -5.09 20.29 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 31 H 0.25 2.92 8.06 -52.48 -0.42 2.49 16 32 H 0.05 0.54 7.80 -51.93 -0.40 0.13 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.36 5.51 7.38 -39.29 -0.29 5.22 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.68 7.85 -51.92 -0.41 1.28 16 44 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.28 8.96 7.12 -40.82 -0.29 8.67 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -37.36 383.04 -8.51 -45.87 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.86 Total: 5.73 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.10 Total: -4.59 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.25 Total: -54.48 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.12 Total: -13.43 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.29 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.11 Total: -5.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.36 -8.51 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.289 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds