Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34483 * 126.16191 * 2 1 4 4 C 1.30255 * 108.69536 * 180.02562 * 3 2 1 5 5 O 1.33964 * 108.76670 * 359.72822 * 4 3 2 6 6 C 1.34325 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.44343 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47233 * 89.99369 * 7 6 2 9 9 C 1.46899 * 110.99765 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46960 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.99842 * 295.35823 * 10 9 8 12 12 C 1.54337 * 109.98839 * 174.31994 * 10 9 8 13 13 C 1.55155 * 103.01857 * 218.66550 * 12 10 9 14 14 C 1.54912 * 101.58314 * 35.31182 * 13 12 10 15 15 N 1.47030 * 109.87818 * 56.45601 * 10 9 8 16 16 C 1.34776 * 125.64594 * 298.39036 * 15 10 9 17 17 O 1.21280 * 120.00179 * 359.71977 * 16 15 10 18 18 C 1.50701 * 119.99720 * 179.72033 * 16 15 10 19 19 S 1.80995 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99705 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00133 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00126 * 24 22 20 28 28 H 1.09004 * 109.46970 * 270.00102 * 1 2 3 29 29 H 1.08993 * 109.47266 * 30.00139 * 1 2 3 30 30 H 1.09003 * 109.46780 * 150.00331 * 1 2 3 31 31 H 1.08011 * 125.61507 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46913 * 329.99620 * 7 6 2 33 33 H 1.09000 * 109.47490 * 209.99438 * 7 6 2 34 34 H 1.00901 * 111.00209 * 303.95352 * 8 7 6 35 35 H 1.09003 * 109.47580 * 60.00809 * 9 8 7 36 36 H 1.08997 * 109.47318 * 299.99886 * 9 8 7 37 37 H 1.09004 * 110.84898 * 100.20606 * 12 10 9 38 38 H 1.08994 * 110.66854 * 337.04999 * 12 10 9 39 39 H 1.08998 * 111.00829 * 277.23922 * 13 12 10 40 40 H 1.09000 * 111.04077 * 153.39825 * 13 12 10 41 41 H 1.09004 * 110.36780 * 204.15030 * 14 13 12 42 42 H 1.08998 * 110.46431 * 81.87614 * 14 13 12 43 43 H 1.08995 * 109.47138 * 59.99991 * 18 16 15 44 44 H 1.08998 * 109.47102 * 300.00238 * 18 16 15 45 45 H 0.97001 * 120.00200 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5430 0.6948 -0.0006 5 8 3.5734 -0.6445 0.0051 6 6 2.2997 -1.0844 0.0005 7 6 1.8494 -2.5225 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 1.2641 -4.3913 -1.4234 10 6 1.1230 -4.8412 -2.8790 11 1 0.3303 -4.2757 -3.3688 12 6 0.8005 -6.3494 -2.9362 13 6 1.6247 -6.8370 -4.1569 14 6 2.8894 -5.9484 -4.0533 15 7 2.3940 -4.6394 -3.5901 16 6 3.0073 -3.4547 -3.7816 17 8 2.5063 -2.4363 -3.3543 18 6 4.3158 -3.3955 -4.5269 19 16 4.8814 -1.6786 -4.6175 20 6 6.3837 -1.8982 -5.5117 21 1 6.6878 -2.8869 -5.8223 22 6 7.1759 -0.8003 -5.8179 23 7 6.8051 0.4047 -5.4398 24 14 8.7689 -1.0331 -6.7652 25 1 9.4241 0.2847 -6.9635 26 1 8.4743 -1.6427 -8.0869 27 1 9.6745 -1.9264 -5.9990 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 4.4065 1.3436 -0.0003 32 1 0.8913 -2.6032 0.5142 33 1 2.5900 -3.1352 0.5147 34 1 1.0701 -2.3983 -1.9010 35 1 0.3018 -4.4845 -0.9199 36 1 2.0003 -5.0171 -0.9190 37 1 -0.2648 -6.5124 -3.1002 38 1 1.1296 -6.8480 -2.0245 39 1 1.0910 -6.6499 -5.0887 40 1 1.8798 -7.8924 -4.0604 41 1 3.3651 -5.8503 -5.0291 42 1 3.5904 -6.3661 -3.3307 43 1 4.1778 -3.7866 -5.5349 44 1 5.0598 -3.9956 -4.0031 45 1 5.9780 0.5256 -4.9476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723885672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -22.201972 kcal Electronic energy + Delta-G solvation = -27885.895649 eV Core-core repulsion = 24030.775985 eV Total energy + Delta-G solvation = -3855.119664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.26980 -41.08024 -38.31683 -37.10189 -36.06935 -34.73961 -33.29548 -32.67702 -31.04031 -30.12630 -28.77256 -27.06546 -26.48393 -24.82668 -23.31882 -23.17738 -22.05710 -21.65557 -20.55583 -19.73995 -18.36850 -17.99403 -17.64112 -17.49189 -16.85464 -16.63732 -15.99992 -15.75817 -15.69143 -15.44718 -15.19223 -15.07704 -14.56810 -14.42836 -14.26794 -14.18893 -14.02515 -13.97687 -13.74923 -13.40838 -13.17328 -13.11421 -12.85612 -12.74068 -12.52755 -12.10690 -12.01313 -11.96882 -11.95708 -11.59704 -11.51057 -11.48761 -11.09557 -10.55516 -10.28175 -9.67925 -9.62640 -8.92939 -8.92255 -8.81473 -6.24916 0.48679 1.25694 1.50570 1.58574 1.66664 1.79156 1.85241 1.92612 2.21608 2.34886 3.02451 3.13875 3.25930 3.31451 3.60160 3.74403 3.79813 3.87736 3.93372 4.04738 4.13904 4.18661 4.27146 4.35402 4.36119 4.37540 4.54445 4.60950 4.61896 4.68118 4.72285 4.76889 4.84538 4.99430 5.04655 5.10338 5.15414 5.15765 5.37939 5.41622 5.55946 5.62783 6.10834 6.14842 6.47496 6.61704 6.73888 7.06911 7.43750 8.50881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008003 B = 0.004629 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.026923 B = 6047.500985 C = 9097.968903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.032 4.032 3 N -0.518 5.518 4 C 0.167 3.833 5 O -0.214 6.214 6 C -0.043 4.043 7 C 0.148 3.852 8 N -0.678 5.678 9 C 0.053 3.947 10 C 0.134 3.866 11 H 0.061 0.939 12 C -0.112 4.112 13 C -0.121 4.121 14 C 0.088 3.912 15 N -0.611 5.611 16 C 0.545 3.455 17 O -0.509 6.509 18 C -0.099 4.099 19 S -0.181 6.181 20 C -0.617 4.617 21 H 0.068 0.932 22 C -0.017 4.017 23 N -0.911 5.911 24 Si 1.134 2.866 25 H -0.278 1.278 26 H -0.264 1.264 27 H -0.264 1.264 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.274 0.726 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.347 0.653 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -17.352 10.249 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.152 4.152 3 N -0.248 5.248 4 C -0.059 4.059 5 O -0.100 6.100 6 C -0.097 4.097 7 C 0.019 3.981 8 N -0.314 5.314 9 C -0.076 4.076 10 C 0.031 3.969 11 H 0.079 0.921 12 C -0.150 4.150 13 C -0.159 4.159 14 C -0.035 4.035 15 N -0.348 5.348 16 C 0.331 3.669 17 O -0.382 6.382 18 C -0.251 4.251 19 S 0.046 5.954 20 C -0.765 4.765 21 H 0.086 0.914 22 C -0.220 4.220 23 N -0.547 5.547 24 Si 0.952 3.048 25 H -0.203 1.203 26 H -0.189 1.189 27 H -0.189 1.189 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.289 0.711 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.962 -14.520 10.183 22.571 hybrid contribution -0.766 -1.774 0.225 1.945 sum -14.728 -16.294 10.408 24.305 Atomic orbital electron populations 1.20148 0.84513 1.03539 1.03749 1.22032 0.99349 0.87430 1.06406 1.70305 1.02195 1.32698 1.19620 1.28673 0.98222 0.79457 0.99505 1.84452 1.31285 1.25163 1.69061 1.23536 0.80463 0.98760 1.06917 1.20313 1.00564 0.85069 0.92127 1.60855 1.56852 1.03540 1.10155 1.22495 0.99826 0.88938 0.96351 1.21814 0.85305 0.98406 0.91388 0.92096 1.22654 1.02167 0.90523 0.99699 1.22750 0.94107 1.00197 0.98799 1.22557 0.98435 0.82678 0.99810 1.48304 1.23830 1.05788 1.56853 1.19206 0.84869 0.83190 0.79602 1.90606 1.65597 1.34213 1.47806 1.23146 0.98424 1.00482 1.03061 1.84948 1.27823 1.08115 1.74561 1.24052 1.09192 0.99067 1.44145 0.91383 1.27782 1.06349 0.90859 0.97002 1.70915 1.24198 1.23691 1.35864 0.82754 0.70070 0.76587 0.75403 1.20307 1.18857 1.18914 0.88922 0.91163 0.89865 0.71072 0.89465 0.89979 0.83093 0.91769 0.90859 0.87859 0.88819 0.90620 0.87231 0.91384 0.90926 0.88911 0.89312 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.41 10.05 71.23 0.72 -0.69 16 2 C -0.03 -1.03 7.11 41.26 0.29 -0.73 16 3 N -0.52 -18.63 11.29 -304.07 -3.43 -22.07 16 4 C 0.17 5.71 13.23 130.48 1.73 7.43 16 5 O -0.21 -8.04 10.78 -3.68 -0.04 -8.08 16 6 C -0.04 -1.42 6.90 24.79 0.17 -1.25 16 7 C 0.15 3.68 5.84 85.56 0.50 4.18 16 8 N -0.68 -18.74 3.31 -517.90 -1.71 -20.45 16 9 C 0.05 1.00 5.28 86.31 0.46 1.46 16 10 C 0.13 2.58 3.28 45.35 0.15 2.73 16 11 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 12 C -0.11 -1.13 6.48 31.79 0.21 -0.92 16 13 C -0.12 -1.33 7.09 31.99 0.23 -1.11 16 14 C 0.09 1.67 6.69 86.86 0.58 2.25 16 15 N -0.61 -16.18 3.06 -787.99 -2.41 -18.59 16 16 C 0.55 20.78 7.43 87.66 0.65 21.43 16 17 O -0.51 -22.43 12.02 -3.03 -0.04 -22.47 16 18 C -0.10 -4.28 5.16 71.24 0.37 -3.91 16 19 S -0.18 -10.35 19.60 -56.49 -1.11 -11.46 16 20 C -0.62 -36.92 9.50 67.95 0.65 -36.27 16 21 H 0.07 3.87 7.80 -2.91 -0.02 3.84 16 22 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 23 N -0.91 -59.12 13.67 21.65 0.30 -58.83 16 24 Si 1.13 50.62 29.92 68.60 2.05 52.68 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 31 H 0.27 6.92 8.06 -2.91 -0.02 6.89 16 32 H 0.09 1.54 7.80 -2.39 -0.02 1.52 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.35 10.71 7.38 -89.69 -0.66 10.04 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.37 8.06 -2.39 -0.02 1.36 16 37 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.09 0.70 7.79 -2.39 -0.02 0.68 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 1.39 7.48 -2.39 -0.02 1.37 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 3.76 7.85 -2.40 -0.02 3.74 16 44 H 0.09 3.69 8.14 -2.40 -0.02 3.67 16 45 H 0.26 17.56 7.12 -92.71 -0.66 16.90 16 Total: -1.00 -85.84 383.04 1.20 -84.64 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.45 Total: 30.57 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 7.15 Total: -5.94 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -7.27 Total: -119.94 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.08 Total: -30.55 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.68 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.11 Total: -11.46 kcal Total: -85.84 1.20 -84.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.433 kcal (2) G-P(sol) polarization free energy of solvation -85.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds