Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29513 * 121.53442 * 2 1 4 4 S 1.69477 * 107.84551 * 180.02562 * 3 2 1 5 5 C 1.72010 * 96.02860 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.32072 * 179.97438 * 5 4 3 7 7 C 1.37902 * 105.36605 * 0.02562 * 5 4 3 8 8 C 1.47335 * 123.09036 * 180.02562 * 7 5 4 9 9 O 1.21616 * 120.00007 * 269.99967 * 8 7 5 10 10 N 1.34781 * 120.00324 * 89.99443 * 8 7 5 11 11 C 1.46502 * 119.99974 * 174.76075 * 10 8 7 12 12 C 1.52991 * 109.54395 * 304.06818 * 11 10 8 13 13 N 1.46498 * 109.47317 * 305.27923 * 12 11 10 14 14 C 1.36936 * 120.00267 * 175.10425 * 13 12 11 15 15 H 1.08006 * 119.99798 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99577 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47054 * 89.99629 * 18 16 14 20 20 H 1.48505 * 109.46980 * 209.99520 * 18 16 14 21 21 H 1.48498 * 109.47155 * 329.99707 * 18 16 14 22 22 C 1.53175 * 109.54187 * 183.88874 * 11 10 8 23 23 C 1.53287 * 109.06418 * 297.03391 * 22 11 10 24 24 O 1.42904 * 109.45978 * 302.44145 * 23 22 11 25 25 C 1.42907 * 114.09548 * 61.16177 * 24 23 22 26 26 C 1.53092 * 109.41386 * 298.84035 * 25 24 23 27 27 H 1.09000 * 109.47401 * 89.96995 * 1 2 3 28 28 H 1.08999 * 109.47583 * 209.97211 * 1 2 3 29 29 H 1.09005 * 109.47142 * 329.98003 * 1 2 3 30 30 H 1.08999 * 109.47212 * 270.00629 * 6 5 4 31 31 H 1.09008 * 109.46874 * 30.00504 * 6 5 4 32 32 H 1.09000 * 109.47153 * 150.00308 * 6 5 4 33 33 H 0.96996 * 119.99546 * 354.76498 * 10 8 7 34 34 H 1.09008 * 109.47313 * 65.27970 * 12 11 10 35 35 H 1.09003 * 109.47149 * 185.28038 * 12 11 10 36 36 H 0.96999 * 119.99959 * 355.10178 * 13 12 11 37 37 H 0.97005 * 119.99988 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.52322 * 57.01638 * 22 11 10 39 39 H 1.08991 * 109.52480 * 177.20983 * 22 11 10 40 40 H 1.09001 * 109.45863 * 182.44693 * 23 22 11 41 41 H 1.08998 * 109.46817 * 62.44428 * 23 22 11 42 42 H 1.09004 * 109.48011 * 178.85838 * 25 24 23 43 43 H 1.08997 * 109.49105 * 58.82586 * 25 24 23 44 44 H 1.09005 * 109.52526 * 297.70125 * 26 25 24 45 45 H 1.08994 * 109.57581 * 177.54588 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7028 -0.0007 5 6 3.6017 -1.0019 -0.0003 6 6 4.6676 -2.0672 -0.0011 7 6 2.2351 -1.1868 -0.0002 8 6 1.6035 -2.5179 0.0008 9 8 1.3428 -3.0681 -1.0521 10 7 1.3146 -3.1261 1.1684 11 6 0.5839 -4.3958 1.1718 12 6 -0.7381 -4.2276 0.4205 13 7 -1.4916 -3.1135 1.0012 14 6 -2.6670 -2.7088 0.4271 15 1 -3.0385 -3.2106 -0.4542 16 6 -3.3807 -1.6528 0.9771 17 7 -2.9278 -1.0409 2.0508 18 14 -4.9838 -1.1002 0.1935 19 1 -6.1140 -1.8523 0.7953 20 1 -5.1750 0.3534 0.4296 21 1 -4.9369 -1.3625 -1.2674 22 6 0.3019 -4.8208 2.6162 23 6 1.6335 -5.0624 3.3360 24 8 2.3828 -6.0541 2.6309 25 6 2.7148 -5.6902 1.2895 26 6 1.4286 -5.4750 0.4875 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 4.9238 -2.3241 -1.0290 31 1 5.5542 -1.6944 0.5120 32 1 4.2960 -2.9535 0.5131 33 1 1.5906 -2.7229 2.0063 34 1 -0.5351 -4.0202 -0.6303 35 1 -1.3225 -5.1439 0.5036 36 1 -1.1579 -2.6625 1.7925 37 1 -3.4267 -0.3032 2.4354 38 1 -0.2524 -4.0328 3.1261 39 1 -0.2845 -5.7395 2.6177 40 1 1.4399 -5.4071 4.3518 41 1 2.2021 -4.1331 3.3698 42 1 3.3000 -6.4873 0.8308 43 1 3.2974 -4.7691 1.2961 44 1 0.8649 -6.4070 0.4460 45 1 1.6783 -5.1550 -0.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724922038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -32.403560 kcal Electronic energy + Delta-G solvation = -29525.215297 eV Core-core repulsion = 25669.653258 eV Total energy + Delta-G solvation = -3855.562038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74478 -39.24080 -37.71096 -35.74242 -33.74864 -33.27261 -31.70042 -31.10475 -30.43877 -29.15633 -28.00676 -26.57163 -23.83764 -23.65429 -22.98704 -21.51514 -21.22537 -19.43084 -18.89789 -18.09109 -17.25957 -16.77862 -16.08759 -15.95003 -15.53829 -14.94714 -14.68335 -14.44233 -14.32155 -14.23923 -13.67348 -13.54277 -13.36342 -13.23152 -13.04863 -12.79130 -12.59324 -12.42247 -12.32929 -11.88031 -11.76518 -11.67677 -11.59446 -11.23587 -11.03743 -10.93171 -10.83242 -10.60324 -10.50282 -10.34293 -10.09005 -9.74456 -9.59852 -9.43909 -9.27445 -8.82398 -8.65815 -8.51613 -6.90909 -5.78384 -3.05203 0.60446 1.40032 1.86627 2.34185 2.83924 3.42785 3.49090 3.50098 3.51178 3.90404 4.37975 4.57003 4.72010 4.86708 4.93612 5.02937 5.05302 5.08779 5.17503 5.24281 5.26534 5.39497 5.55603 5.57757 5.66504 5.70444 5.72905 5.79404 5.89241 5.99322 6.04351 6.11813 6.17907 6.24411 6.25860 6.40826 6.48904 6.78588 6.81733 6.98766 7.02588 7.20716 7.72046 7.75259 8.40255 8.47243 9.52677 10.07172 10.44147 11.43667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008568 B = 0.006023 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.354798 B = 4647.758970 C = 7115.811548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.168 3.832 3 N -0.465 5.465 4 S 0.245 5.755 5 C -0.144 4.144 6 C -0.082 4.082 7 C -0.206 4.206 8 C 0.604 3.396 9 O -0.518 6.518 10 N -0.705 5.705 11 C 0.174 3.826 12 C 0.140 3.860 13 N -0.724 5.724 14 C -0.231 4.231 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.899 3.101 19 H -0.292 1.292 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.154 4.154 23 C 0.060 3.940 24 O -0.385 6.385 25 C 0.066 3.934 26 C -0.164 4.164 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.381 0.619 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.837 -4.385 0.795 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.009 4.009 3 N -0.285 5.285 4 S 0.401 5.599 5 C -0.275 4.275 6 C -0.140 4.140 7 C -0.227 4.227 8 C 0.387 3.613 9 O -0.393 6.393 10 N -0.357 5.357 11 C 0.088 3.912 12 C 0.012 3.988 13 N -0.368 5.368 14 C -0.362 4.362 15 H 0.086 0.914 16 C -0.205 4.205 17 N -0.581 5.581 18 Si 0.731 3.269 19 H -0.219 1.219 20 H -0.218 1.218 21 H -0.209 1.209 22 C -0.192 4.192 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.011 4.011 26 C -0.203 4.203 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.215 0.785 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.410 -2.845 -0.005 17.641 hybrid contribution -1.792 -0.462 0.104 1.853 sum 15.618 -3.307 0.099 15.965 Atomic orbital electron populations 1.20876 0.83689 1.06882 1.04180 1.21678 0.99933 0.86465 0.92856 1.76532 0.99162 1.25939 1.26895 1.83825 1.12213 0.95473 1.68389 1.25961 0.97125 1.02443 1.01922 1.20363 0.94779 0.95074 1.03801 1.20338 0.92216 0.96334 1.13826 1.17089 0.77217 0.82988 0.84056 1.90746 1.52208 1.64936 1.31431 1.45959 1.57855 1.23727 1.08109 1.20638 0.92514 0.82219 0.95814 1.21101 0.88340 0.92135 0.97229 1.42227 1.24364 1.36740 1.33504 1.19178 0.97536 1.11551 1.07982 0.91426 1.24605 0.98896 0.98944 0.98077 1.69620 1.39840 1.25616 1.22990 0.86300 0.84204 0.77706 0.78694 1.21922 1.21849 1.20886 1.22475 0.98123 1.03888 0.94764 1.22643 0.91408 0.91718 0.95868 1.87905 1.73645 1.43355 1.25440 1.22523 0.95978 1.00094 0.82483 1.22567 0.97111 0.99188 1.01441 0.90081 0.86223 0.90289 0.89419 0.90136 0.90224 0.76964 0.93114 0.95992 0.78468 0.93631 0.89070 0.89376 0.88754 0.93606 0.89242 0.93639 0.90243 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.96 36.00 0.36 -1.50 16 2 C 0.17 2.96 6.75 -83.20 -0.56 2.39 16 3 N -0.46 -7.88 11.97 32.50 0.39 -7.49 16 4 S 0.25 3.16 23.69 -107.50 -2.55 0.62 16 5 C -0.14 -1.84 6.67 -34.43 -0.23 -2.07 16 6 C -0.08 -0.74 10.19 36.01 0.37 -0.37 16 7 C -0.21 -3.26 5.61 -105.95 -0.59 -3.86 16 8 C 0.60 10.02 5.17 -12.56 -0.06 9.95 16 9 O -0.52 -10.10 13.40 5.26 0.07 -10.03 16 10 N -0.71 -10.29 3.76 -48.53 -0.18 -10.48 16 11 C 0.17 2.61 0.32 -131.64 -0.04 2.57 16 12 C 0.14 2.73 4.80 -4.05 -0.02 2.71 16 13 N -0.72 -16.49 4.38 -59.91 -0.26 -16.76 16 14 C -0.23 -6.06 9.99 -15.06 -0.15 -6.21 16 15 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -25.69 13.06 55.49 0.72 -24.97 16 18 Si 0.90 21.83 29.55 -169.99 -5.02 16.80 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.15 -2.09 4.83 -26.49 -0.13 -2.22 16 23 C 0.06 0.69 6.67 37.31 0.25 0.93 16 24 O -0.38 -4.82 10.77 -35.23 -0.38 -5.20 16 25 C 0.07 0.75 6.68 37.20 0.25 1.00 16 26 C -0.16 -2.20 4.82 -26.59 -0.13 -2.33 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.12 2.60 6.37 -51.93 -0.33 2.27 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.08 0.71 7.15 -51.93 -0.37 0.34 16 33 H 0.40 5.19 7.39 -40.82 -0.30 4.89 16 34 H 0.05 1.11 6.24 -51.92 -0.32 0.79 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.38 8.89 6.35 -40.82 -0.26 8.64 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.09 1.37 7.20 -51.93 -0.37 1.00 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.47 7.02 -51.93 -0.36 0.11 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.49 7.05 -51.93 -0.37 0.13 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.40 6.25 -51.93 -0.32 1.07 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -30.02 370.32 -8.79 -38.81 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.37 Total: 12.44 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.79 Total: 0.67 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.67 Total: -59.69 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.31 Total: -15.23 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.55 Total: 0.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.02 -8.79 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724922038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.403 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds