Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30183 * 126.80005 * 2 1 4 4 O 1.20924 * 111.60122 * 180.25147 * 3 2 1 5 5 C 1.34033 * 111.57128 * 359.74561 * 4 3 2 6 6 C 1.35458 * 106.44365 * 359.97438 * 5 4 3 7 7 C 1.50706 * 128.00560 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47088 * 260.02545 * 7 6 5 9 9 C 1.46897 * 110.99917 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.30568 * 318.47815 * 9 8 7 11 11 C 1.54387 * 110.43323 * 80.70835 * 9 8 7 12 12 N 1.48144 * 104.61681 * 95.05090 * 11 9 8 13 13 C 1.34783 * 127.83783 * 219.58798 * 12 11 9 14 14 O 1.21274 * 120.00148 * 359.97316 * 13 12 11 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 11 16 16 S 1.80995 * 109.47023 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99863 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00354 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99380 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00355 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47032 * 60.00066 * 21 19 17 23 23 H 1.48502 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46852 * 300.00147 * 21 19 17 25 25 C 1.48145 * 104.32703 * 39.58710 * 12 11 9 26 26 C 1.54280 * 110.34414 * 196.30140 * 9 8 7 27 27 H 1.09007 * 110.34681 * 122.05053 * 26 9 8 28 28 C 1.52998 * 110.34226 * 359.89423 * 26 9 8 29 29 H 1.08999 * 109.47264 * 270.16426 * 1 2 3 30 30 H 1.08998 * 109.47277 * 30.16373 * 1 2 3 31 31 H 1.09001 * 109.46820 * 150.16749 * 1 2 3 32 32 H 1.07997 * 126.77816 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.47014 * 140.01859 * 7 6 5 34 34 H 1.09011 * 109.46781 * 20.02345 * 7 6 5 35 35 H 1.00899 * 111.00080 * 56.05056 * 8 7 6 36 36 H 1.08996 * 110.41046 * 213.83545 * 11 9 8 37 37 H 1.08996 * 110.40821 * 336.26601 * 11 9 8 38 38 H 1.09001 * 109.47123 * 300.00130 * 15 13 12 39 39 H 1.09001 * 109.46967 * 59.99567 * 15 13 12 40 40 H 0.97005 * 119.99529 * 179.97438 * 20 19 17 41 41 H 1.08993 * 110.41120 * 201.63230 * 25 12 11 42 42 H 1.08995 * 110.50583 * 79.24727 * 25 12 11 43 43 H 1.08999 * 109.47343 * 66.28241 * 28 26 9 44 44 H 1.09001 * 109.46977 * 186.28219 * 28 26 9 45 45 H 1.09003 * 109.47032 * 306.27821 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6066 -0.0034 6 6 2.3539 -1.1319 0.0039 7 6 1.9591 -2.5863 0.0078 8 7 1.5921 -2.9978 -1.3537 9 6 1.2000 -4.4130 -1.3883 10 1 1.8689 -5.0062 -0.7647 11 6 -0.2609 -4.5793 -0.9174 12 7 -1.0577 -4.5863 -2.1662 13 6 -2.2542 -4.0062 -2.3868 14 8 -2.8016 -3.3883 -1.4983 15 6 -2.9119 -4.1255 -3.7375 16 16 -4.4947 -3.2479 -3.7174 17 6 -5.0286 -3.5420 -5.3706 18 1 -4.4118 -4.1205 -6.0424 19 6 -6.2423 -3.0312 -5.8093 20 7 -6.9943 -2.3265 -4.9903 21 14 -6.8086 -3.3436 -7.5618 22 1 -6.9318 -4.8059 -7.7889 23 1 -8.1270 -2.6956 -7.7788 24 1 -5.8168 -2.7771 -8.5108 25 6 -0.2412 -5.3754 -3.1177 26 6 1.2130 -4.9379 -2.8390 27 1 1.8897 -5.7878 -2.9285 28 6 1.6278 -3.8251 -3.8035 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 4.5339 -1.1532 -0.0073 33 1 1.1075 -2.7298 0.6728 34 1 2.7977 -3.1895 0.3561 35 1 2.3434 -2.8145 -2.0018 36 1 -0.3832 -5.5215 -0.3833 37 1 -0.5538 -3.7418 -0.2843 38 1 -2.2635 -3.6888 -4.4971 39 1 -3.0828 -5.1773 -3.9668 40 1 -7.8423 -1.9692 -5.2970 41 1 -0.5192 -5.1384 -4.1446 42 1 -0.3599 -6.4423 -2.9292 43 1 2.6657 -3.5498 -3.6160 44 1 1.5251 -4.1770 -4.8301 45 1 0.9882 -2.9556 -3.6518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724936827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = 38.288740 kcal Electronic energy + Delta-G solvation = -27217.568323 eV Core-core repulsion = 23365.071733 eV Total energy + Delta-G solvation = -3852.496590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.10065 -40.10997 -37.97655 -36.10414 -34.25093 -32.63058 -32.40670 -31.67898 -30.11181 -28.73138 -27.90213 -26.64264 -25.73022 -25.40590 -22.86168 -21.63929 -21.46497 -19.78781 -19.33140 -17.83730 -17.73745 -17.53258 -16.88316 -16.57922 -15.69816 -15.27126 -14.90403 -14.78325 -14.61791 -14.49805 -14.12902 -13.85003 -13.31405 -13.22793 -13.06155 -12.95996 -12.82009 -12.60498 -12.49228 -12.41682 -12.25054 -11.82869 -11.71194 -11.34962 -11.13888 -11.11057 -11.08160 -11.02547 -11.01260 -10.75154 -9.97053 -9.80280 -9.74017 -9.34597 -9.04066 -8.78686 -8.45034 -8.20732 -6.47316 -6.19531 -3.89796 1.26266 2.02565 2.94570 3.04099 3.13709 3.24570 3.27268 3.30442 3.65039 3.80704 4.09806 4.20078 4.23825 4.34314 4.38671 4.55303 4.74785 4.86097 4.99201 5.06304 5.13655 5.15450 5.18810 5.23651 5.32425 5.41622 5.47311 5.48524 5.55552 5.58751 5.64635 5.67220 5.70134 5.78620 5.79771 5.88586 5.93716 6.13897 6.18179 6.18838 6.37670 6.71479 7.03301 7.60985 7.79360 8.12668 8.36877 8.63752 9.25549 10.87835 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002714 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.724467 B =10314.528221 C =11301.634127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.044 3.956 3 N -0.371 5.371 4 O 0.095 5.905 5 C -0.061 4.061 6 C -0.196 4.196 7 C 0.134 3.866 8 N -0.673 5.673 9 C 0.076 3.924 10 H 0.058 0.942 11 C 0.115 3.885 12 N -0.621 5.621 13 C 0.557 3.443 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.106 3.894 26 C -0.104 4.104 27 H 0.084 0.916 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.212 0.788 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.347 0.653 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.151 -5.483 8.543 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 N -0.077 5.077 4 O 0.032 5.968 5 C -0.144 4.144 6 C -0.200 4.200 7 C 0.005 3.995 8 N -0.308 5.308 9 C -0.034 4.034 10 H 0.076 0.924 11 C -0.009 4.009 12 N -0.357 5.357 13 C 0.346 3.654 14 O -0.390 6.390 15 C -0.296 4.296 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.018 4.018 26 C -0.124 4.124 27 H 0.103 0.897 28 C -0.203 4.203 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.169 0.831 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.179 -2.846 9.920 25.373 hybrid contribution 1.256 -2.293 -2.113 3.361 sum 24.435 -5.139 7.808 26.161 Atomic orbital electron populations 1.20242 0.85301 1.04977 1.03271 1.23608 0.99325 0.87867 1.00744 1.73890 0.89311 1.24260 1.20256 1.84828 1.21834 1.22722 1.67456 1.25770 1.00459 0.84160 1.03977 1.21167 0.92106 0.97469 1.09289 1.20146 0.99797 0.87785 0.91724 1.60590 1.45020 1.18633 1.06589 1.22485 0.96448 0.88124 0.96368 0.92404 1.22253 0.88654 1.01861 0.88155 1.48822 1.19417 1.54166 1.13340 1.19897 0.78530 0.77216 0.89765 1.90698 1.62172 1.40415 1.45714 1.23492 1.04626 1.05580 0.95949 1.85387 1.12480 1.67873 1.17505 1.22819 1.08080 1.39876 0.97575 0.91051 1.24984 0.95486 0.94556 0.98517 1.70013 1.12098 1.32835 1.35338 0.86238 0.77942 0.78587 0.82815 1.19960 1.20815 1.19946 1.22392 0.89050 0.95314 0.94994 1.22236 0.97061 0.98840 0.94224 0.89737 1.21765 1.00885 0.99304 0.98316 0.90418 0.90548 0.88684 0.77149 0.89359 0.93902 0.83079 0.91472 0.89404 0.89429 0.89531 0.92148 0.89825 0.91211 0.92999 0.92291 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.39 36.00 0.37 -0.60 16 2 C 0.04 0.53 7.33 -82.10 -0.60 -0.08 16 3 N -0.37 -4.82 12.07 33.42 0.40 -4.41 16 4 O 0.10 1.01 11.20 17.19 0.19 1.20 16 5 C -0.06 -0.45 12.26 29.74 0.36 -0.09 16 6 C -0.20 -1.78 5.84 -104.42 -0.61 -2.39 16 7 C 0.13 1.00 5.96 -4.98 -0.03 0.97 16 8 N -0.67 -5.58 5.35 -106.52 -0.57 -6.15 16 9 C 0.08 0.59 3.34 -66.32 -0.22 0.37 16 10 H 0.06 0.34 7.95 -51.93 -0.41 -0.07 16 11 C 0.11 1.26 6.62 -2.41 -0.02 1.24 16 12 N -0.62 -8.58 3.32 -169.31 -0.56 -9.14 16 13 C 0.56 10.67 7.93 -10.98 -0.09 10.58 16 14 O -0.52 -11.86 16.13 5.56 0.09 -11.77 16 15 C -0.15 -3.00 5.13 36.01 0.18 -2.82 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 1.06 6.46 -2.40 -0.02 1.04 16 26 C -0.10 -0.77 3.66 -89.22 -0.33 -1.10 16 27 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 28 C -0.15 -1.15 7.81 37.16 0.29 -0.86 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.09 0.73 7.32 -51.93 -0.38 0.35 16 34 H 0.04 0.23 8.09 -51.92 -0.42 -0.19 16 35 H 0.35 2.57 6.14 -39.29 -0.24 2.33 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.13 6.97 -51.93 -0.36 0.77 16 38 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 0.87 7.02 -51.93 -0.36 0.51 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.32 7.06 -51.93 -0.37 -0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.83 7.54 -51.93 -0.39 0.44 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -35.80 385.82 -8.33 -44.13 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.70 Total: -0.03 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.50 Total: -6.70 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.01 Total: -45.26 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.28 Total: -10.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.80 -8.33 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.421 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds