Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30183 * 126.80005 * 2 1 4 4 O 1.20924 * 111.60122 * 180.25147 * 3 2 1 5 5 C 1.34033 * 111.57128 * 359.74561 * 4 3 2 6 6 C 1.35458 * 106.44365 * 359.97438 * 5 4 3 7 7 C 1.50706 * 128.00560 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47088 * 260.02545 * 7 6 5 9 9 C 1.46897 * 110.99917 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.30568 * 318.47815 * 9 8 7 11 11 C 1.54387 * 110.43323 * 80.70835 * 9 8 7 12 12 N 1.48144 * 104.61681 * 95.05090 * 11 9 8 13 13 C 1.34783 * 127.83783 * 219.58798 * 12 11 9 14 14 O 1.21274 * 120.00148 * 359.97316 * 13 12 11 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 11 16 16 S 1.80995 * 109.47023 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99863 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00354 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99380 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00355 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47032 * 60.00066 * 21 19 17 23 23 H 1.48502 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46852 * 300.00147 * 21 19 17 25 25 C 1.48145 * 104.32703 * 39.58710 * 12 11 9 26 26 C 1.54280 * 110.34414 * 196.30140 * 9 8 7 27 27 H 1.09007 * 110.34681 * 122.05053 * 26 9 8 28 28 C 1.52998 * 110.34226 * 359.89423 * 26 9 8 29 29 H 1.08999 * 109.47264 * 270.16426 * 1 2 3 30 30 H 1.08998 * 109.47277 * 30.16373 * 1 2 3 31 31 H 1.09001 * 109.46820 * 150.16749 * 1 2 3 32 32 H 1.07997 * 126.77816 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.47014 * 140.01859 * 7 6 5 34 34 H 1.09011 * 109.46781 * 20.02345 * 7 6 5 35 35 H 1.00899 * 111.00080 * 56.05056 * 8 7 6 36 36 H 1.08996 * 110.41046 * 213.83545 * 11 9 8 37 37 H 1.08996 * 110.40821 * 336.26601 * 11 9 8 38 38 H 1.09001 * 109.47123 * 300.00130 * 15 13 12 39 39 H 1.09001 * 109.46967 * 59.99567 * 15 13 12 40 40 H 0.97005 * 119.99529 * 179.97438 * 20 19 17 41 41 H 1.08993 * 110.41120 * 201.63230 * 25 12 11 42 42 H 1.08995 * 110.50583 * 79.24727 * 25 12 11 43 43 H 1.08999 * 109.47343 * 66.28241 * 28 26 9 44 44 H 1.09001 * 109.46977 * 186.28219 * 28 26 9 45 45 H 1.09003 * 109.47032 * 306.27821 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6066 -0.0034 6 6 2.3539 -1.1319 0.0039 7 6 1.9591 -2.5863 0.0078 8 7 1.5921 -2.9978 -1.3537 9 6 1.2000 -4.4130 -1.3883 10 1 1.8689 -5.0062 -0.7647 11 6 -0.2609 -4.5793 -0.9174 12 7 -1.0577 -4.5863 -2.1662 13 6 -2.2542 -4.0062 -2.3868 14 8 -2.8016 -3.3883 -1.4983 15 6 -2.9119 -4.1255 -3.7375 16 16 -4.4947 -3.2479 -3.7174 17 6 -5.0286 -3.5420 -5.3706 18 1 -4.4118 -4.1205 -6.0424 19 6 -6.2423 -3.0312 -5.8093 20 7 -6.9943 -2.3265 -4.9903 21 14 -6.8086 -3.3436 -7.5618 22 1 -6.9318 -4.8059 -7.7889 23 1 -8.1270 -2.6956 -7.7788 24 1 -5.8168 -2.7771 -8.5108 25 6 -0.2412 -5.3754 -3.1177 26 6 1.2130 -4.9379 -2.8390 27 1 1.8897 -5.7878 -2.9285 28 6 1.6278 -3.8251 -3.8035 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 4.5339 -1.1532 -0.0073 33 1 1.1075 -2.7298 0.6728 34 1 2.7977 -3.1895 0.3561 35 1 2.3434 -2.8145 -2.0018 36 1 -0.3832 -5.5215 -0.3833 37 1 -0.5538 -3.7418 -0.2843 38 1 -2.2635 -3.6888 -4.4971 39 1 -3.0828 -5.1773 -3.9668 40 1 -7.8423 -1.9692 -5.2970 41 1 -0.5192 -5.1384 -4.1446 42 1 -0.3599 -6.4423 -2.9292 43 1 2.6657 -3.5498 -3.6160 44 1 1.5251 -4.1770 -4.8301 45 1 0.9882 -2.9556 -3.6518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724936827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = 13.002598 kcal Electronic energy + Delta-G solvation = -27218.664812 eV Core-core repulsion = 23365.071733 eV Total energy + Delta-G solvation = -3853.593080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.91667 -41.11776 -39.18255 -36.92072 -35.14679 -34.59084 -33.51156 -32.39881 -31.46325 -29.70182 -28.93515 -27.69892 -27.42361 -26.40787 -23.75927 -22.44365 -22.17576 -20.70628 -20.42696 -19.59621 -18.58162 -18.43188 -17.97445 -17.64210 -16.88818 -16.65414 -16.40643 -16.07068 -15.60256 -15.46889 -15.31397 -14.94641 -14.51993 -14.27425 -14.19949 -13.98991 -13.88159 -13.69199 -13.39201 -13.27494 -13.24035 -13.14042 -12.94715 -12.86885 -12.65753 -12.59827 -12.13474 -11.82560 -11.79051 -11.75902 -11.67710 -11.13375 -10.87766 -10.80409 -10.43861 -10.28243 -9.69678 -9.22785 -8.67634 -8.34834 -6.13387 0.60915 1.20503 1.24912 1.43321 1.45106 1.55034 1.65393 2.15549 2.27651 2.46067 2.98985 3.14903 3.25737 3.37002 3.53305 3.61680 3.66485 3.92718 3.99068 4.11643 4.18421 4.26166 4.36056 4.44655 4.52869 4.56148 4.56971 4.59800 4.64279 4.70013 4.73956 4.78584 4.87541 4.91668 4.95252 5.03517 5.08094 5.19463 5.22531 5.38160 5.40352 5.56470 6.13271 6.18872 6.50916 6.54722 7.05853 7.21136 7.38255 8.74252 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002714 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.724467 B =10314.528221 C =11301.634127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.017 3.983 3 N -0.407 5.407 4 O 0.090 5.910 5 C -0.035 4.035 6 C -0.207 4.207 7 C 0.141 3.859 8 N -0.694 5.694 9 C 0.088 3.912 10 H 0.096 0.904 11 C 0.106 3.894 12 N -0.613 5.613 13 C 0.552 3.448 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.094 3.906 26 C -0.092 4.092 27 H 0.124 0.876 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.355 0.645 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.964 -8.322 7.415 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.141 4.141 3 N -0.114 5.114 4 O 0.027 5.973 5 C -0.117 4.117 6 C -0.212 4.212 7 C 0.012 3.988 8 N -0.331 5.331 9 C -0.022 4.022 10 H 0.114 0.886 11 C -0.017 4.017 12 N -0.347 5.347 13 C 0.340 3.660 14 O -0.449 6.449 15 C -0.269 4.269 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.028 4.028 26 C -0.111 4.111 27 H 0.142 0.858 28 C -0.200 4.200 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.178 0.822 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 27.061 -5.721 8.787 29.021 hybrid contribution 0.232 -1.463 -1.694 2.250 sum 27.293 -7.184 7.093 29.100 Atomic orbital electron populations 1.20073 0.86493 1.03315 1.03207 1.23746 0.99128 0.89383 1.01833 1.73883 0.90311 1.25331 1.21881 1.84773 1.20735 1.24619 1.67187 1.26652 1.01661 0.82647 1.00718 1.21384 0.92175 0.97634 1.09976 1.20131 1.00447 0.87122 0.91094 1.60452 1.45942 1.19338 1.07334 1.22440 0.94334 0.88417 0.97037 0.88636 1.22585 0.90478 1.01870 0.86734 1.48747 1.17823 1.52450 1.15701 1.19582 0.80145 0.77695 0.88533 1.90673 1.64181 1.43199 1.46800 1.23268 1.00665 1.05192 0.97750 1.85574 1.17896 1.70145 1.18654 1.23155 1.08672 1.40083 0.97538 0.90032 1.26146 0.95420 0.93918 1.03663 1.70188 1.12633 1.34075 1.37895 0.85001 0.77530 0.79101 0.76350 1.18487 1.20346 1.18671 1.22814 0.90104 0.96105 0.93764 1.22260 0.95580 0.99785 0.93513 0.85814 1.21726 1.01480 0.98134 0.98694 0.89800 0.91917 0.90477 0.72012 0.90988 0.90298 0.82202 0.89369 0.92170 0.88272 0.87865 0.91983 0.90516 0.88645 0.90730 0.92123 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.39 71.23 0.74 -1.22 16 2 C 0.02 0.43 7.33 43.57 0.32 0.75 16 3 N -0.41 -10.77 12.07 -49.55 -0.60 -11.37 16 4 O 0.09 1.80 11.20 71.70 0.80 2.61 16 5 C -0.03 -0.41 12.26 67.18 0.82 0.42 16 6 C -0.21 -3.45 5.84 -19.73 -0.12 -3.56 16 7 C 0.14 1.75 5.96 85.56 0.51 2.26 16 8 N -0.69 -9.86 5.35 -490.91 -2.63 -12.49 16 9 C 0.09 1.03 3.34 45.82 0.15 1.19 16 10 H 0.10 0.53 7.95 -2.39 -0.02 0.51 16 11 C 0.11 2.17 6.62 86.53 0.57 2.74 16 12 N -0.61 -16.49 3.32 -807.97 -2.68 -19.17 16 13 C 0.55 21.84 7.93 87.66 0.70 22.54 16 14 O -0.57 -27.89 16.13 -3.01 -0.05 -27.94 16 15 C -0.12 -4.95 5.13 71.24 0.37 -4.58 16 16 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 17 C -0.55 -31.88 9.50 67.95 0.65 -31.23 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16 21 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 C 0.09 1.61 6.46 86.54 0.56 2.17 16 26 C -0.09 -0.97 3.66 -9.89 -0.04 -1.01 16 27 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 28 C -0.14 -1.84 7.81 71.98 0.56 -1.28 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.26 -0.04 8.06 -2.91 -0.02 -0.06 16 33 H 0.07 1.14 7.32 -2.39 -0.02 1.12 16 34 H 0.08 0.44 8.09 -2.38 -0.02 0.42 16 35 H 0.35 4.09 6.14 -89.69 -0.55 3.54 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.60 6.97 -2.39 -0.02 1.58 16 38 H 0.10 3.89 7.95 -2.39 -0.02 3.87 16 39 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.75 8.31 -92.70 -0.77 14.97 16 41 H 0.08 1.43 7.02 -2.39 -0.02 1.42 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 0.63 7.06 -2.39 -0.02 0.61 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.04 0.83 7.54 -2.39 -0.02 0.81 16 Total: -1.00 -85.65 385.82 2.72 -82.93 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.45 Total: 15.31 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 6.26 Total: -9.58 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -5.62 Total: -99.72 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.75 Total: -25.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -85.65 2.72 -82.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.935 kcal (2) G-P(sol) polarization free energy of solvation -85.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds