Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29425 * 124.80249 * 2 1 4 4 C 1.30950 * 117.36240 * 179.73155 * 3 2 1 5 5 C 1.50695 * 122.90403 * 180.34973 * 4 3 2 6 6 C 1.35666 * 114.18879 * 0.52961 * 4 3 2 7 7 C 1.46675 * 126.12856 * 179.78735 * 6 4 3 8 8 O 1.21695 * 120.00207 * 359.71065 * 7 6 4 9 9 N 1.34780 * 120.00180 * 179.71432 * 7 6 4 10 10 C 1.46497 * 120.00149 * 184.33391 * 9 7 6 11 11 C 1.52992 * 109.46082 * 58.11795 * 10 9 7 12 12 O 1.42900 * 109.47432 * 54.53194 * 11 10 9 13 13 C 1.53042 * 109.45839 * 178.08966 * 10 9 7 14 14 C 1.53188 * 109.31508 * 58.62738 * 13 10 9 15 15 N 1.46926 * 108.76468 * 54.65588 * 14 13 10 16 16 C 1.36941 * 120.62999 * 126.35753 * 15 14 13 17 17 H 1.07996 * 120.00261 * 205.98506 * 16 15 14 18 18 C 1.38811 * 119.99787 * 25.99665 * 16 15 14 19 19 N 1.31620 * 120.00195 * 30.02964 * 18 16 15 20 20 Si 1.86799 * 119.99760 * 210.02977 * 18 16 15 21 21 H 1.48501 * 109.47176 * 94.98666 * 20 18 16 22 22 H 1.48504 * 109.47188 * 214.98814 * 20 18 16 23 23 H 1.48500 * 109.47368 * 334.98507 * 20 18 16 24 24 C 1.46926 * 118.74100 * 306.38571 * 15 14 13 25 25 C 1.53039 * 109.46254 * 298.14050 * 10 9 7 26 26 S 1.70957 * 124.80447 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46561 * 269.96906 * 1 2 3 28 28 H 1.08994 * 109.47177 * 29.97043 * 1 2 3 29 29 H 1.09000 * 109.47290 * 149.97158 * 1 2 3 30 30 H 1.08998 * 109.47281 * 270.19167 * 5 4 3 31 31 H 1.08998 * 109.47196 * 30.19868 * 5 4 3 32 32 H 1.09008 * 109.47018 * 150.19160 * 5 4 3 33 33 H 0.97005 * 119.99356 * 4.33738 * 9 7 6 34 34 H 1.09009 * 109.47048 * 294.53142 * 11 10 9 35 35 H 1.08997 * 109.47658 * 174.53366 * 11 10 9 36 36 H 0.96701 * 114.00338 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.49803 * 178.59573 * 13 10 9 38 38 H 1.09006 * 109.49879 * 298.68948 * 13 10 9 39 39 H 1.08996 * 109.60055 * 294.86701 * 14 13 10 40 40 H 1.09000 * 109.58786 * 174.43752 * 14 13 10 41 41 H 0.97002 * 120.00120 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58084 * 293.82004 * 24 15 14 43 43 H 1.08993 * 109.58690 * 173.39105 * 24 15 14 44 44 H 1.09003 * 109.49249 * 61.31117 * 25 10 9 45 45 H 1.09001 * 109.49874 * 181.40410 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8932 0.0054 5 6 4.5197 2.0417 0.0139 6 6 3.9352 -0.4059 -0.0010 7 6 5.3188 -0.8926 -0.0016 8 8 6.2426 -0.1003 -0.0012 9 7 5.5673 -2.2173 -0.0026 10 6 6.9457 -2.7041 0.0927 11 6 7.5863 -2.1729 1.3765 12 8 6.7705 -2.5232 2.4963 13 6 6.9454 -4.2343 0.1185 14 6 6.2720 -4.7622 -1.1521 15 7 6.9446 -4.1788 -2.3209 16 6 7.4359 -4.9813 -3.3158 17 1 8.2577 -4.6406 -3.9281 18 6 6.8774 -6.2326 -3.5375 19 7 5.6049 -6.4415 -3.2741 20 14 7.9320 -7.6202 -4.2098 21 1 8.4467 -8.4408 -3.0842 22 1 7.1140 -8.4722 -5.1100 23 1 9.0737 -7.0508 -4.9698 24 6 7.0807 -2.7181 -2.4016 25 6 7.7447 -2.2131 -1.1167 26 16 2.4828 -1.4037 -0.0006 27 1 -0.3632 -0.0006 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5143 30 1 4.7571 2.3244 -1.0117 31 1 4.0756 2.8919 0.5316 32 1 5.4322 1.7396 0.5280 33 1 4.8333 -2.8483 -0.0665 34 1 7.6746 -1.0880 1.3166 35 1 8.5767 -2.6119 1.4971 36 1 7.1164 -2.2174 3.3459 37 1 7.9721 -4.5976 0.1642 38 1 6.3962 -4.5833 0.9929 39 1 5.2204 -4.4755 -1.1548 40 1 6.3566 -5.8484 -1.1863 41 1 5.2147 -7.3160 -3.4287 42 1 6.0950 -2.2646 -2.5061 43 1 7.6989 -2.4556 -3.2599 44 1 7.7644 -1.1232 -1.1215 45 1 8.7638 -2.5956 -1.0592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725020607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -18.104480 kcal Electronic energy + Delta-G solvation = -28652.535865 eV Core-core repulsion = 24797.593881 eV Total energy + Delta-G solvation = -3854.941984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53887 -39.69165 -37.46282 -36.15039 -34.10408 -33.06550 -32.08967 -30.56359 -30.03899 -29.33086 -27.97854 -26.72458 -23.88928 -23.07128 -22.56152 -22.21182 -20.79446 -19.40719 -18.93592 -17.73189 -17.15925 -17.03780 -16.47206 -15.59765 -15.20502 -14.82976 -14.76215 -14.63527 -14.11065 -14.00032 -13.75287 -13.53001 -13.37721 -13.36290 -13.07351 -12.75853 -12.59510 -12.52124 -12.31659 -12.11074 -11.81831 -11.46267 -11.39644 -11.32120 -11.07414 -10.75190 -10.46095 -10.35862 -10.08960 -10.01035 -9.82547 -9.75864 -9.64215 -9.49275 -9.16555 -8.80984 -8.61363 -8.42444 -6.78313 -5.87149 -3.17845 0.23829 1.14564 1.56365 2.44036 3.33928 3.34379 3.37097 3.46029 3.47280 3.90269 4.39748 4.50004 4.75839 4.88120 5.06767 5.14752 5.17773 5.23488 5.28028 5.39861 5.49952 5.55770 5.58767 5.69259 5.69574 5.80581 5.86160 5.91048 6.03389 6.18336 6.25929 6.33569 6.48301 6.51463 6.59097 6.76761 6.87247 6.96604 7.14848 7.38274 7.55266 7.74306 7.78766 7.82660 8.36629 8.39423 9.14013 9.81020 10.38630 11.21302 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003806 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.515371 B = 7355.871357 C = 8339.797773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.481 5.481 4 C 0.142 3.858 5 C -0.086 4.086 6 C -0.291 4.291 7 C 0.603 3.397 8 O -0.532 6.532 9 N -0.692 5.692 10 C 0.195 3.805 11 C 0.063 3.937 12 O -0.567 6.567 13 C -0.142 4.142 14 C 0.173 3.827 15 N -0.589 5.589 16 C -0.261 4.261 17 H 0.067 0.933 18 C 0.010 3.990 19 N -0.887 5.887 20 Si 0.888 3.112 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.152 3.848 25 C -0.144 4.144 26 S 0.171 5.829 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.371 0.629 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.016 0.984 40 H 0.079 0.921 41 H 0.253 0.747 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 11.618 11.314 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.223 4.223 3 N -0.197 5.197 4 C 0.004 3.996 5 C -0.145 4.145 6 C -0.415 4.415 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.342 5.342 10 C 0.109 3.891 11 C -0.015 4.015 12 O -0.371 6.371 13 C -0.182 4.182 14 C 0.046 3.954 15 N -0.311 5.311 16 C -0.390 4.390 17 H 0.085 0.915 18 C -0.190 4.190 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.203 1.203 24 C 0.026 3.974 25 C -0.184 4.184 26 S 0.428 5.572 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.216 0.784 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.503 11.109 10.787 16.795 hybrid contribution 0.944 -0.278 0.036 0.985 sum -5.559 10.831 10.824 16.290 Atomic orbital electron populations 1.20507 0.84823 1.04578 1.04078 1.27348 1.02061 0.91495 1.01352 1.66075 1.04496 1.31398 1.17711 1.20614 0.89819 0.93661 0.95487 1.20621 0.96919 0.93318 1.03625 1.25578 0.98324 0.97111 1.20519 1.16549 0.85628 0.82724 0.76279 1.90675 1.43919 1.55190 1.51448 1.45841 1.09590 1.05713 1.73022 1.20346 0.80612 0.95217 0.92916 1.22732 0.92885 0.99917 0.85985 1.86485 1.52098 1.81596 1.16928 1.22441 1.02898 0.91958 1.00893 1.20662 0.92684 0.98840 0.83191 1.44104 1.67834 0.99627 1.19584 1.19132 1.10689 0.97166 1.12052 0.91521 1.24856 0.94704 0.99966 0.99516 1.70221 1.09314 1.22189 1.51285 0.86488 0.80535 0.82922 0.78279 1.21463 1.21969 1.20308 1.20793 0.96873 0.85637 0.94080 1.22413 0.99105 1.01394 0.95512 1.84115 0.96470 1.10881 1.65702 0.89289 0.89050 0.89698 0.90235 0.91161 0.88157 0.76550 0.91821 0.93301 0.78361 0.90871 0.91754 0.96611 0.90251 0.93686 0.96674 0.92648 0.90416 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 36.01 0.38 -0.22 16 2 C 0.05 0.62 7.39 -13.29 -0.10 0.53 16 3 N -0.48 -6.72 10.50 -7.70 -0.08 -6.80 16 4 C 0.14 2.09 6.79 -83.89 -0.57 1.52 16 5 C -0.09 -1.10 9.69 36.00 0.35 -0.76 16 6 C -0.29 -4.46 6.48 -37.10 -0.24 -4.70 16 7 C 0.60 10.11 7.19 -12.85 -0.09 10.02 16 8 O -0.53 -9.40 10.56 5.19 0.05 -9.34 16 9 N -0.69 -11.65 3.87 -48.87 -0.19 -11.84 16 10 C 0.19 3.31 0.44 -131.78 -0.06 3.26 16 11 C 0.06 0.94 5.60 37.15 0.21 1.14 16 12 O -0.57 -7.86 12.94 -35.23 -0.46 -8.32 16 13 C -0.14 -2.62 4.88 -26.61 -0.13 -2.75 16 14 C 0.17 3.89 5.17 -3.71 -0.02 3.87 16 15 N -0.59 -14.34 2.99 -172.33 -0.52 -14.86 16 16 C -0.26 -7.07 9.50 -15.06 -0.14 -7.22 16 17 H 0.07 1.80 7.98 -52.49 -0.42 1.38 16 18 C 0.01 0.26 4.54 -17.43 -0.08 0.18 16 19 N -0.89 -25.21 11.96 55.49 0.66 -24.55 16 20 Si 0.89 21.27 29.65 -169.99 -5.04 16.23 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.15 3.27 6.26 -3.71 -0.02 3.24 16 25 C -0.14 -2.62 4.69 -26.61 -0.12 -2.75 16 26 S 0.17 2.18 22.31 -107.50 -2.40 -0.22 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.38 6.02 -51.92 -0.31 1.07 16 33 H 0.40 6.75 6.40 -40.82 -0.26 6.48 16 34 H 0.06 0.98 6.35 -51.92 -0.33 0.65 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 3.44 9.12 45.56 0.42 3.86 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.12 7.80 -51.93 -0.41 0.72 16 39 H 0.02 0.37 6.90 -51.93 -0.36 0.01 16 40 H 0.08 2.01 6.33 -51.93 -0.33 1.68 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 43 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.08 1.40 6.19 -51.93 -0.32 1.08 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -31.85 367.38 -8.72 -40.57 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.65 Total: 8.22 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -0.64 Total: 5.37 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.12 Total: -58.04 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.40 Total: -17.66 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.04 Total: 16.23 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.40 Total: -0.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.85 -8.72 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725020607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.468 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds