Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29425 * 124.80249 * 2 1 4 4 C 1.30950 * 117.36240 * 179.73155 * 3 2 1 5 5 C 1.50695 * 122.90403 * 180.34973 * 4 3 2 6 6 C 1.35666 * 114.18879 * 0.52961 * 4 3 2 7 7 C 1.46675 * 126.12856 * 179.78735 * 6 4 3 8 8 O 1.21695 * 120.00207 * 359.71065 * 7 6 4 9 9 N 1.34780 * 120.00180 * 179.71432 * 7 6 4 10 10 C 1.46497 * 120.00149 * 184.33391 * 9 7 6 11 11 C 1.52992 * 109.46082 * 58.11795 * 10 9 7 12 12 O 1.42900 * 109.47432 * 54.53194 * 11 10 9 13 13 C 1.53042 * 109.45839 * 178.08966 * 10 9 7 14 14 C 1.53188 * 109.31508 * 58.62738 * 13 10 9 15 15 N 1.46926 * 108.76468 * 54.65588 * 14 13 10 16 16 C 1.36941 * 120.62999 * 126.35753 * 15 14 13 17 17 H 1.07996 * 120.00261 * 205.98506 * 16 15 14 18 18 C 1.38811 * 119.99787 * 25.99665 * 16 15 14 19 19 N 1.31620 * 120.00195 * 30.02964 * 18 16 15 20 20 Si 1.86799 * 119.99760 * 210.02977 * 18 16 15 21 21 H 1.48501 * 109.47176 * 94.98666 * 20 18 16 22 22 H 1.48504 * 109.47188 * 214.98814 * 20 18 16 23 23 H 1.48500 * 109.47368 * 334.98507 * 20 18 16 24 24 C 1.46926 * 118.74100 * 306.38571 * 15 14 13 25 25 C 1.53039 * 109.46254 * 298.14050 * 10 9 7 26 26 S 1.70957 * 124.80447 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46561 * 269.96906 * 1 2 3 28 28 H 1.08994 * 109.47177 * 29.97043 * 1 2 3 29 29 H 1.09000 * 109.47290 * 149.97158 * 1 2 3 30 30 H 1.08998 * 109.47281 * 270.19167 * 5 4 3 31 31 H 1.08998 * 109.47196 * 30.19868 * 5 4 3 32 32 H 1.09008 * 109.47018 * 150.19160 * 5 4 3 33 33 H 0.97005 * 119.99356 * 4.33738 * 9 7 6 34 34 H 1.09009 * 109.47048 * 294.53142 * 11 10 9 35 35 H 1.08997 * 109.47658 * 174.53366 * 11 10 9 36 36 H 0.96701 * 114.00338 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.49803 * 178.59573 * 13 10 9 38 38 H 1.09006 * 109.49879 * 298.68948 * 13 10 9 39 39 H 1.08996 * 109.60055 * 294.86701 * 14 13 10 40 40 H 1.09000 * 109.58786 * 174.43752 * 14 13 10 41 41 H 0.97002 * 120.00120 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58084 * 293.82004 * 24 15 14 43 43 H 1.08993 * 109.58690 * 173.39105 * 24 15 14 44 44 H 1.09003 * 109.49249 * 61.31117 * 25 10 9 45 45 H 1.09001 * 109.49874 * 181.40410 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8932 0.0054 5 6 4.5197 2.0417 0.0139 6 6 3.9352 -0.4059 -0.0010 7 6 5.3188 -0.8926 -0.0016 8 8 6.2426 -0.1003 -0.0012 9 7 5.5673 -2.2173 -0.0026 10 6 6.9457 -2.7041 0.0927 11 6 7.5863 -2.1729 1.3765 12 8 6.7705 -2.5232 2.4963 13 6 6.9454 -4.2343 0.1185 14 6 6.2720 -4.7622 -1.1521 15 7 6.9446 -4.1788 -2.3209 16 6 7.4359 -4.9813 -3.3158 17 1 8.2577 -4.6406 -3.9281 18 6 6.8774 -6.2326 -3.5375 19 7 5.6049 -6.4415 -3.2741 20 14 7.9320 -7.6202 -4.2098 21 1 8.4467 -8.4408 -3.0842 22 1 7.1140 -8.4722 -5.1100 23 1 9.0737 -7.0508 -4.9698 24 6 7.0807 -2.7181 -2.4016 25 6 7.7447 -2.2131 -1.1167 26 16 2.4828 -1.4037 -0.0006 27 1 -0.3632 -0.0006 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5143 30 1 4.7571 2.3244 -1.0117 31 1 4.0756 2.8919 0.5316 32 1 5.4322 1.7396 0.5280 33 1 4.8333 -2.8483 -0.0665 34 1 7.6746 -1.0880 1.3166 35 1 8.5767 -2.6119 1.4971 36 1 7.1164 -2.2174 3.3459 37 1 7.9721 -4.5976 0.1642 38 1 6.3962 -4.5833 0.9929 39 1 5.2204 -4.4755 -1.1548 40 1 6.3566 -5.8484 -1.1863 41 1 5.2147 -7.3160 -3.4287 42 1 6.0950 -2.2646 -2.5061 43 1 7.6989 -2.4556 -3.2599 44 1 7.7644 -1.1232 -1.1215 45 1 8.7638 -2.5956 -1.0592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725020607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -41.033332 kcal Electronic energy + Delta-G solvation = -28653.530135 eV Core-core repulsion = 24797.593881 eV Total energy + Delta-G solvation = -3855.936253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78136 -40.85568 -38.87349 -37.45492 -35.66828 -34.06802 -33.72596 -32.17554 -31.71521 -30.17752 -29.15936 -28.30568 -25.63389 -24.15906 -23.98274 -23.53643 -22.39877 -20.61015 -20.37508 -18.95372 -18.66648 -18.18657 -17.87845 -16.80423 -16.71460 -16.41560 -16.02702 -15.88155 -15.65460 -15.33997 -15.10769 -14.93631 -14.69628 -14.43610 -14.35355 -14.15780 -13.91589 -13.44483 -13.29570 -13.27239 -13.19179 -13.12595 -12.95537 -12.64225 -12.60001 -12.36755 -12.26094 -12.05677 -11.83657 -11.48685 -11.41172 -11.10264 -10.85664 -10.56939 -10.50186 -10.47049 -10.04065 -9.71733 -8.77302 -7.93536 -5.27197 -0.80364 0.14273 0.53941 1.36145 1.46113 1.49801 1.58028 2.07867 2.12060 2.51724 2.99752 3.17432 3.26852 3.64251 3.65030 3.89812 3.92085 3.96231 4.07648 4.24711 4.41357 4.52510 4.53285 4.59534 4.63993 4.65082 4.67881 4.69203 4.74552 4.86056 4.88865 4.97726 5.07261 5.10045 5.14565 5.23453 5.32170 5.33329 5.52121 5.60750 5.69325 6.33283 6.42476 6.57702 6.89628 7.10214 7.11362 7.82436 8.36604 9.12911 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003806 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.515371 B = 7355.871357 C = 8339.797773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.068 3.932 3 N -0.502 5.502 4 C 0.141 3.859 5 C -0.083 4.083 6 C -0.327 4.327 7 C 0.602 3.398 8 O -0.547 6.547 9 N -0.695 5.695 10 C 0.193 3.807 11 C 0.075 3.925 12 O -0.578 6.578 13 C -0.126 4.126 14 C 0.181 3.819 15 N -0.602 5.602 16 C -0.274 4.274 17 H 0.063 0.937 18 C -0.035 4.035 19 N -0.919 5.919 20 Si 0.952 3.048 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.271 1.271 24 C 0.154 3.846 25 C -0.131 4.131 26 S 0.177 5.823 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.393 0.607 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.003 0.997 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.001 0.999 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 12.115 12.454 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.206 4.206 3 N -0.218 5.218 4 C 0.003 3.997 5 C -0.141 4.141 6 C -0.451 4.451 7 C 0.389 3.611 8 O -0.428 6.428 9 N -0.344 5.344 10 C 0.107 3.893 11 C -0.003 4.003 12 O -0.385 6.385 13 C -0.165 4.165 14 C 0.055 3.945 15 N -0.325 5.325 16 C -0.404 4.404 17 H 0.080 0.920 18 C -0.233 4.233 19 N -0.563 5.563 20 Si 0.781 3.219 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.196 1.196 24 C 0.028 3.972 25 C -0.171 4.171 26 S 0.434 5.566 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.021 0.979 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.784 11.623 11.956 18.001 hybrid contribution 0.901 -0.370 -0.334 1.030 sum -5.882 11.253 11.621 17.213 Atomic orbital electron populations 1.20785 0.81603 1.05941 1.05887 1.28170 1.03723 0.90510 0.98233 1.66173 1.04227 1.32068 1.19329 1.20922 0.90544 0.93884 0.94387 1.20607 0.96331 0.93432 1.03764 1.25491 0.98464 0.97979 1.23170 1.16717 0.86270 0.82408 0.75753 1.90652 1.44619 1.55349 1.52167 1.45833 1.09357 1.05879 1.73340 1.20322 0.80900 0.94130 0.93900 1.22488 0.93238 0.99463 0.85160 1.86427 1.52455 1.81775 1.17889 1.22219 1.02552 0.92955 0.98794 1.20504 0.92387 0.97013 0.84630 1.44312 1.67916 1.00604 1.19691 1.19390 1.10463 0.97954 1.12566 0.91973 1.25533 0.95522 1.01733 1.00479 1.70314 1.10634 1.22368 1.52967 0.85493 0.78924 0.79936 0.77589 1.21139 1.22349 1.19554 1.20816 0.96332 0.84194 0.95836 1.22230 0.99203 1.01368 0.94279 1.84060 0.95637 1.11033 1.65838 0.87022 0.88077 0.87852 0.90062 0.89514 0.89158 0.76822 0.92312 0.91544 0.75834 0.90606 0.90497 0.97911 0.93328 0.93942 0.98084 0.93267 0.90088 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.46 71.24 0.75 -0.26 16 2 C 0.07 1.50 7.39 88.46 0.65 2.16 16 3 N -0.50 -13.37 10.50 -178.28 -1.87 -15.24 16 4 C 0.14 4.07 6.79 42.09 0.29 4.35 16 5 C -0.08 -2.08 9.69 71.23 0.69 -1.39 16 6 C -0.33 -9.96 6.48 23.88 0.15 -9.81 16 7 C 0.60 20.14 7.19 86.45 0.62 20.76 16 8 O -0.55 -19.20 10.56 -4.33 -0.05 -19.24 16 9 N -0.69 -23.29 3.87 -426.73 -1.65 -24.94 16 10 C 0.19 6.41 0.44 3.63 0.00 6.41 16 11 C 0.08 2.07 5.60 71.98 0.40 2.48 16 12 O -0.58 -14.76 12.94 -148.98 -1.93 -16.68 16 13 C -0.13 -4.54 4.88 30.67 0.15 -4.39 16 14 C 0.18 8.28 5.17 86.36 0.45 8.73 16 15 N -0.60 -29.78 2.99 -699.12 -2.09 -31.87 16 16 C -0.27 -15.02 9.50 84.03 0.80 -14.22 16 17 H 0.06 3.39 7.98 -2.91 -0.02 3.37 16 18 C -0.04 -1.94 4.54 84.86 0.39 -1.55 16 19 N -0.92 -53.19 11.96 21.65 0.26 -52.94 16 20 Si 0.95 44.14 29.65 68.60 2.03 46.17 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.15 6.69 6.26 86.36 0.54 7.23 16 25 C -0.13 -4.69 4.69 30.67 0.14 -4.55 16 26 S 0.18 4.37 22.31 -56.49 -1.26 3.11 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.47 6.02 -2.38 -0.01 2.45 16 33 H 0.40 13.53 6.40 -92.70 -0.59 12.94 16 34 H 0.06 1.71 6.35 -2.38 -0.02 1.70 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.39 6.25 9.12 -74.06 -0.68 5.57 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.08 2.59 7.80 -2.38 -0.02 2.57 16 39 H 0.00 0.14 6.90 -2.39 -0.02 0.12 16 40 H 0.05 2.51 6.33 -2.39 -0.02 2.50 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.00 0.06 7.74 -2.39 -0.02 0.04 16 43 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 44 H 0.08 2.88 6.19 -2.39 -0.01 2.86 16 45 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -68.62 367.38 -0.77 -69.39 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.23 Total: 26.28 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.02 Total: 15.95 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.36 Total: -124.98 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.97 Total: -35.93 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.26 Total: 3.11 kcal Total: -68.62 -0.77 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725020607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.357 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds