Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32769 * 123.46006 * 2 1 4 4 S 1.75505 * 110.57573 * 180.02562 * 3 2 1 5 5 C 1.70448 * 92.44761 * 359.82092 * 4 3 2 6 6 C 1.36009 * 110.81395 * 0.31849 * 5 4 3 7 7 C 1.47185 * 123.45960 * 179.89416 * 6 5 4 8 8 O 1.21643 * 119.99998 * 179.70199 * 7 6 5 9 9 N 1.34773 * 120.00084 * 359.97438 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09002 * 109.46905 * 34.99910 * 10 9 7 12 12 C 1.52999 * 109.46961 * 275.00501 * 10 9 7 13 13 C 1.52995 * 109.47327 * 155.00306 * 10 9 7 14 14 H 1.08994 * 109.47294 * 60.00193 * 13 10 9 15 15 C 1.52997 * 109.47067 * 299.99685 * 13 10 9 16 16 N 1.46905 * 109.46788 * 180.02562 * 13 10 9 17 17 C 1.46907 * 110.99699 * 204.99883 * 16 13 10 18 18 C 1.50698 * 109.47168 * 180.02562 * 17 16 13 19 19 O 1.21300 * 119.99976 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00070 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00231 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99543 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00301 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99944 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47325 * 59.99703 * 25 23 21 27 27 H 1.48501 * 109.46802 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47075 * 299.99610 * 25 23 21 29 29 H 1.09002 * 109.46905 * 269.97557 * 1 2 3 30 30 H 1.08996 * 109.46922 * 29.97773 * 1 2 3 31 31 H 1.08997 * 109.46685 * 149.97451 * 1 2 3 32 32 H 1.08003 * 124.71447 * 0.02562 * 3 2 1 33 33 H 1.07989 * 124.59248 * 180.18673 * 5 4 3 34 34 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 35 35 H 1.08995 * 109.47658 * 59.99810 * 12 10 9 36 36 H 1.09003 * 109.47063 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47539 * 299.99611 * 12 10 9 38 38 H 1.09002 * 109.47193 * 180.02562 * 15 13 10 39 39 H 1.08994 * 109.47479 * 300.00396 * 15 13 10 40 40 H 1.09003 * 109.46891 * 60.00368 * 15 13 10 41 41 H 1.00900 * 111.00408 * 328.95048 * 16 13 10 42 42 H 1.08997 * 109.47042 * 299.99917 * 17 16 13 43 43 H 1.09000 * 109.46976 * 59.99862 * 17 16 13 44 44 H 0.97000 * 120.00404 * 359.97438 * 20 18 17 45 45 H 0.96995 * 120.00421 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0007 5 6 3.6411 -0.9600 0.0043 6 6 2.3033 -1.2050 -0.0007 7 6 1.7263 -2.5590 -0.0003 8 8 0.5187 -2.7055 0.0006 9 7 2.5358 -3.6365 0.0046 10 6 1.9615 -4.9842 0.0110 11 1 1.0445 -4.9912 -0.5783 12 6 1.6461 -5.3973 1.4500 13 6 2.9642 -5.9688 -0.5941 14 1 3.8811 -5.9618 -0.0048 15 6 3.2795 -5.5557 -2.0331 16 7 2.3880 -7.3201 -0.5882 17 6 3.4431 -8.3422 -0.5835 18 6 2.8153 -9.7122 -0.5781 19 8 1.6077 -9.8260 -0.5777 20 7 3.5956 -10.8110 -0.5727 21 6 3.0245 -12.0574 -0.5684 22 1 1.9493 -12.1586 -0.5688 23 6 3.8290 -13.1903 -0.5633 24 7 5.1373 -13.0671 -0.5633 25 14 3.0508 -14.8884 -0.5567 26 1 2.2087 -15.0518 -1.7688 27 1 4.1174 -15.9217 -0.5526 28 1 2.2077 -15.0418 0.6561 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5142 32 1 1.8375 2.1103 0.0004 33 1 4.4043 -1.7239 0.0085 34 1 3.4987 -3.5197 0.0040 35 1 0.9318 -4.6960 1.8812 36 1 1.2184 -6.3999 1.4548 37 1 2.5630 -5.3903 2.0394 38 1 3.9935 -6.2574 -2.4644 39 1 2.3626 -5.5627 -2.6224 40 1 3.7069 -4.5530 -2.0379 41 1 1.7621 -7.4429 0.1937 42 1 4.0617 -8.2299 -1.4739 43 1 4.0615 -8.2220 0.3061 44 1 4.5614 -10.7201 -0.5727 45 1 5.6990 -13.8579 -0.5601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725086308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -69.126851 kcal Electronic energy + Delta-G solvation = -26361.384589 eV Core-core repulsion = 22504.230109 eV Total energy + Delta-G solvation = -3857.154480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26318 -40.21448 -38.88806 -37.82148 -36.05249 -35.40361 -33.29901 -32.76022 -31.23937 -30.74292 -28.58613 -28.00179 -25.92238 -25.65386 -24.15150 -21.90485 -21.56784 -21.09201 -19.97828 -19.82251 -18.66903 -18.16380 -17.66146 -17.27699 -16.87687 -16.41284 -16.14275 -15.88968 -15.55400 -15.37608 -15.00251 -14.81023 -14.57358 -14.37604 -14.13734 -14.07383 -14.04278 -13.60157 -13.49170 -13.47053 -13.13628 -13.00911 -12.89830 -12.80882 -12.67990 -12.59373 -12.43010 -12.32939 -12.12324 -11.82205 -11.63230 -11.50159 -10.86573 -10.34261 -10.21891 -10.01402 -9.84499 -9.36323 -9.23438 -8.46469 -5.95006 -0.20223 0.65097 0.97494 0.98275 1.39817 1.41882 1.52548 2.02244 2.05960 2.30267 2.32829 2.97725 3.20842 3.50096 3.55015 3.75468 3.94680 3.97038 4.15466 4.21903 4.30723 4.39811 4.42425 4.46120 4.55807 4.59569 4.65444 4.70212 4.72395 4.81314 4.84100 4.94599 4.98900 5.01256 5.17926 5.29423 5.37665 5.40074 5.41803 5.58206 5.89489 6.10242 6.36743 6.51913 6.60574 7.12945 7.21961 7.56545 8.12264 8.70560 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.001778 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.818259 B =15744.407468 C =16292.093851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.248 4.248 4 S 0.241 5.759 5 C -0.205 4.205 6 C -0.182 4.182 7 C 0.575 3.425 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.151 3.849 11 H 0.071 0.929 12 C -0.164 4.164 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.188 0.812 33 H 0.196 0.804 34 H 0.412 0.588 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.346 0.654 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 30.839 2.415 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.382 4.382 4 S 0.509 5.491 5 C -0.343 4.343 6 C -0.201 4.201 7 C 0.362 3.638 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.046 3.954 11 H 0.089 0.911 12 C -0.223 4.223 13 C -0.026 4.026 14 H 0.091 0.909 15 C -0.195 4.195 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.213 0.787 34 H 0.250 0.750 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.542 31.365 1.738 31.739 hybrid contribution -0.692 -2.010 0.856 2.291 sum 3.850 29.355 2.594 29.720 Atomic orbital electron populations 1.20574 0.89348 1.03247 1.02522 1.19989 0.97641 0.90650 1.00671 1.25631 0.97437 1.03048 1.12120 1.82923 1.03859 0.94994 1.67330 1.26028 0.99076 1.04825 1.04413 1.20088 0.93265 0.93297 1.13421 1.17941 0.85998 0.84516 0.75345 1.90751 1.15861 1.86973 1.51598 1.45640 1.10461 1.04491 1.74820 1.20815 0.96921 0.81129 0.96559 0.91091 1.22192 1.02536 1.01477 0.96091 1.21759 0.96046 0.86951 0.97811 0.90930 1.21807 1.01484 1.01416 0.94828 1.60166 1.18439 1.00988 1.51938 1.21581 0.93591 0.88005 1.03334 1.20907 0.87351 0.87149 0.82226 1.90504 1.16334 1.87628 1.56654 1.41907 1.09138 1.04843 1.65018 1.19620 0.93365 0.83417 1.50041 0.90441 1.26015 0.95760 1.03140 0.96287 1.69653 1.03804 1.32277 1.50207 0.85007 0.77796 0.76753 0.78892 1.19878 1.19397 1.19737 0.91485 0.90129 0.91636 0.79468 0.78723 0.75019 0.92778 0.91839 0.90739 0.92228 0.93804 0.90334 0.83208 0.87620 0.91008 0.76881 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.55 71.24 0.68 -1.15 16 2 C -0.08 -1.39 6.01 -19.46 -0.12 -1.51 16 3 C -0.25 -2.92 10.91 66.64 0.73 -2.19 16 4 S 0.24 1.98 23.02 -56.49 -1.30 0.68 16 5 C -0.20 -2.23 10.38 67.30 0.70 -1.53 16 6 C -0.18 -3.28 5.98 -19.87 -0.12 -3.40 16 7 C 0.57 13.21 7.76 86.59 0.67 13.88 16 8 O -0.57 -17.76 13.87 -4.17 -0.06 -17.82 16 9 N -0.70 -12.51 4.35 -446.03 -1.94 -14.45 16 10 C 0.15 3.40 2.29 44.99 0.10 3.50 16 11 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 12 C -0.16 -3.70 9.25 71.98 0.67 -3.03 16 13 C 0.08 1.84 2.28 44.91 0.10 1.94 16 14 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 15 C -0.14 -2.83 9.26 71.98 0.67 -2.16 16 16 N -0.68 -21.05 5.93 -495.58 -2.94 -23.99 16 17 C 0.07 2.21 5.97 85.56 0.51 2.72 16 18 C 0.44 20.65 7.82 87.66 0.69 21.34 16 19 O -0.62 -34.95 15.78 -3.09 -0.05 -35.00 16 20 N -0.57 -29.15 5.29 -306.99 -1.62 -30.77 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 25 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.06 1.60 6.02 -2.39 -0.01 1.59 16 32 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.20 0.90 7.01 -2.92 -0.02 0.88 16 34 H 0.41 4.49 6.89 -92.71 -0.64 3.85 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.57 6.21 -2.39 -0.01 1.56 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.23 7.45 -2.39 -0.02 1.22 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.17 7.45 -2.39 -0.02 1.16 16 41 H 0.35 11.46 5.87 -89.69 -0.53 10.93 16 42 H 0.11 3.12 7.43 -2.39 -0.02 3.10 16 43 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 44 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -74.55 384.67 0.11 -74.45 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.85 Total: 40.79 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.56 Total: 9.98 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.22 Total: -118.13 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.30 Total: 0.68 kcal Total: -74.55 0.11 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725086308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.320 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds