Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35460 * 126.77632 * 2 1 4 4 C 1.41376 * 103.98211 * 180.14314 * 3 2 1 5 5 C 1.50709 * 126.80098 * 179.88941 * 4 3 2 6 6 N 1.46903 * 109.47149 * 94.70713 * 5 4 3 7 7 C 1.47960 * 110.99893 * 190.00258 * 6 5 4 8 8 C 1.53936 * 86.17683 * 222.41479 * 7 6 5 9 9 C 1.53003 * 113.72939 * 138.07996 * 8 7 6 10 10 H 1.09000 * 109.47265 * 305.18782 * 9 8 7 11 11 C 1.53002 * 109.47125 * 185.18843 * 9 8 7 12 12 N 1.46501 * 109.47050 * 65.18618 * 9 8 7 13 13 C 1.34781 * 119.99781 * 204.72150 * 12 9 8 14 14 O 1.21277 * 119.99937 * 0.27872 * 13 12 9 15 15 C 1.50700 * 119.99786 * 180.27918 * 13 12 9 16 16 S 1.80998 * 109.46976 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00160 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99387 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00295 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99701 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00237 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47062 * 59.99820 * 21 19 17 23 23 H 1.48503 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47066 * 299.99933 * 21 19 17 25 25 C 1.48188 * 111.07024 * 90.56760 * 6 5 4 26 26 N 1.30173 * 106.40011 * 359.62443 * 4 3 2 27 27 O 1.20922 * 111.60054 * 0.24056 * 26 4 3 28 28 H 1.08994 * 109.47006 * 180.30294 * 1 2 3 29 29 H 1.09002 * 109.46947 * 300.29935 * 1 2 3 30 30 H 1.09001 * 109.47283 * 60.29626 * 1 2 3 31 31 H 1.07995 * 128.00722 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46862 * 334.71211 * 5 4 3 33 33 H 1.09000 * 109.47107 * 214.70749 * 5 4 3 34 34 H 1.08998 * 113.75755 * 108.09647 * 7 6 5 35 35 H 1.08996 * 113.85817 * 336.74795 * 7 6 5 36 36 H 1.08996 * 113.73433 * 269.25297 * 8 7 6 37 37 H 1.08994 * 109.47273 * 175.96585 * 11 9 8 38 38 H 1.08997 * 109.46980 * 295.96934 * 11 9 8 39 39 H 1.08996 * 109.46912 * 55.96289 * 11 9 8 40 40 H 0.96995 * 119.99794 * 25.00183 * 12 9 8 41 41 H 1.09000 * 109.47206 * 300.00182 * 15 13 12 42 42 H 1.08994 * 109.47145 * 59.99825 * 15 13 12 43 43 H 0.97004 * 119.99745 * 179.97438 * 20 19 17 44 44 H 1.08992 * 113.75998 * 23.23933 * 25 6 5 45 45 H 1.08997 * 113.82186 * 251.80857 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0034 5 6 4.9211 1.3000 -0.0072 6 7 5.4048 1.4502 1.3718 7 6 6.5445 2.3917 1.4343 8 6 7.1881 1.3868 2.4067 9 6 8.6820 1.1643 2.1626 10 1 8.8407 0.8689 1.1254 11 6 9.1916 0.0600 3.0910 12 7 9.4113 2.4056 2.4338 13 6 10.6022 2.6301 1.8440 14 8 11.0676 1.8069 1.0847 15 6 11.3553 3.9042 2.1279 16 16 12.9052 3.9100 1.1930 17 6 13.5613 5.4653 1.6979 18 1 13.0103 6.0847 2.3902 19 6 14.7862 5.8945 1.2060 20 7 15.4574 5.1398 0.3619 21 14 15.4815 7.5437 1.7408 22 1 15.6648 7.5492 3.2144 23 1 16.7913 7.7672 1.0776 24 1 14.5408 8.6261 1.3549 25 6 6.2883 0.3230 1.7522 26 7 3.4764 -0.7563 0.0031 27 8 2.3095 -1.0735 0.0051 28 1 -0.3633 -1.0276 0.0054 29 1 -0.3633 0.5185 0.8873 30 1 -0.3634 0.5092 -0.8926 31 1 2.0345 2.1271 0.0004 32 1 4.7630 2.2852 -0.4461 33 1 5.6605 0.7551 -0.5942 34 1 6.2980 3.3497 1.8922 35 1 7.0818 2.4968 0.4919 36 1 6.9524 1.5769 3.4537 37 1 10.2379 -0.1482 2.8678 38 1 9.0988 0.3851 4.1272 39 1 8.6009 -0.8433 2.9394 40 1 9.0390 3.0640 3.0411 41 1 10.7484 4.7591 1.8298 42 1 11.5734 3.9675 3.1939 43 1 16.3133 5.4399 0.0178 44 1 6.7495 -0.1797 0.9022 45 1 5.8375 -0.3689 2.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725242661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = 53.357292 kcal Electronic energy + Delta-G solvation = -25850.166474 eV Core-core repulsion = 21998.323305 eV Total energy + Delta-G solvation = -3851.843169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.21390 -40.64495 -38.97372 -35.59150 -34.54787 -33.69972 -32.43249 -31.58963 -29.72753 -28.48708 -28.18536 -26.37265 -25.54578 -25.42114 -23.35719 -22.17948 -20.50761 -20.17780 -19.82598 -17.96738 -17.82591 -17.52678 -16.57101 -16.45844 -15.98651 -15.33202 -15.24450 -14.87001 -14.80686 -14.50799 -14.13769 -14.01519 -13.74103 -13.54467 -13.21438 -13.18476 -13.07345 -12.78631 -12.71530 -12.64289 -12.16877 -11.95551 -11.79203 -11.43337 -11.22966 -11.05456 -11.04471 -10.99468 -10.97284 -10.76528 -10.35018 -9.82640 -9.65204 -9.40597 -9.25285 -9.06539 -8.85898 -8.24330 -6.50401 -6.21917 -3.92609 1.14673 1.88239 2.78165 3.00678 3.09668 3.23058 3.26921 3.29995 3.52031 3.65845 3.90504 4.02233 4.20199 4.21466 4.39103 4.59424 4.71356 4.81061 4.90075 4.91513 4.97094 5.03778 5.07991 5.13156 5.16411 5.17929 5.24389 5.28864 5.34558 5.39545 5.45541 5.49755 5.57974 5.69912 5.70744 5.82778 5.88714 5.89136 6.05096 6.13775 6.22504 6.56629 6.67310 7.58805 7.72737 7.97944 8.34578 8.62409 9.23266 10.85423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.001716 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.202143 B =16312.715925 C =16785.919890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.222 4.222 4 C 0.034 3.966 5 C 0.096 3.904 6 N -0.476 5.476 7 C 0.011 3.989 8 C -0.122 4.122 9 C 0.152 3.848 10 H 0.086 0.914 11 C -0.163 4.163 12 N -0.733 5.733 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.017 3.983 26 N -0.361 5.361 27 O 0.098 5.902 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.487 -8.237 2.875 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.244 4.244 4 C -0.125 4.125 5 C -0.033 4.033 6 N -0.199 5.199 7 C -0.117 4.117 8 C -0.141 4.141 9 C 0.047 3.953 10 H 0.104 0.896 11 C -0.221 4.221 12 N -0.387 5.387 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.112 4.112 26 N -0.065 5.065 27 O 0.031 5.969 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.187 0.813 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.286 -10.540 1.826 31.179 hybrid contribution 0.031 2.984 0.973 3.139 sum -29.256 -7.555 2.799 30.345 Atomic orbital electron populations 1.20331 0.84070 1.04645 1.04082 1.24498 0.96380 0.86231 1.02984 1.22366 0.91279 1.00965 1.09768 1.23298 0.97011 0.89794 1.02402 1.20957 0.90917 0.99255 0.92189 1.68525 1.25156 1.06069 1.20150 1.23970 0.90586 0.97556 0.99608 1.23287 0.93397 0.96635 1.00821 1.20890 0.88811 0.85067 1.00538 0.89578 1.22158 1.02435 0.98046 0.99500 1.46038 1.21564 1.21381 1.49705 1.20306 0.80339 0.87991 0.79433 1.90698 1.66800 1.46659 1.35086 1.23533 1.04023 0.97052 1.05811 1.85393 1.12802 1.26913 1.58264 1.22832 1.08107 1.04866 1.32683 0.90987 1.24986 0.95778 0.98120 0.94654 1.70011 1.14209 1.36931 1.29139 0.86228 0.78164 0.82278 0.78852 1.19935 1.20804 1.19954 1.24045 0.92597 0.94363 1.00199 1.73840 0.96884 1.16433 1.19335 1.84825 1.11326 1.33232 1.67508 0.89929 0.89176 0.89210 0.81285 0.88465 0.91674 0.88781 0.90465 0.87678 0.91597 0.92434 0.91919 0.76869 0.89281 0.89263 0.92133 0.90542 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 36.00 0.38 0.16 16 2 C -0.04 -0.27 7.49 -35.30 -0.26 -0.54 16 3 C -0.22 -1.76 11.06 -39.38 -0.44 -2.20 16 4 C 0.03 0.34 6.89 -82.10 -0.57 -0.22 16 5 C 0.10 0.87 5.39 -4.97 -0.03 0.84 16 6 N -0.48 -4.42 6.14 -239.54 -1.47 -5.90 16 7 C 0.01 0.10 7.39 -2.76 -0.02 0.08 16 8 C -0.12 -1.05 3.35 -89.69 -0.30 -1.35 16 9 C 0.15 1.71 2.28 -67.93 -0.16 1.56 16 10 H 0.09 1.15 7.49 -51.93 -0.39 0.77 16 11 C -0.16 -1.79 9.45 37.16 0.35 -1.44 16 12 N -0.73 -9.27 4.95 -53.80 -0.27 -9.53 16 13 C 0.53 9.65 7.81 -10.98 -0.09 9.56 16 14 O -0.52 -11.53 15.53 5.56 0.09 -11.45 16 15 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.02 0.16 7.35 -2.63 -0.02 0.14 16 26 N -0.36 -4.17 12.07 33.42 0.40 -3.77 16 27 O 0.10 0.98 11.20 17.19 0.19 1.18 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.07 0.62 7.39 -51.93 -0.38 0.23 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.59 7.99 -51.93 -0.42 0.17 16 40 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.73 7.38 -51.93 -0.38 0.35 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -35.66 395.01 -9.28 -44.94 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.95 Total: 0.68 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.73 Total: -9.18 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.60 Total: -44.60 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.28 Total: -10.27 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.66 -9.28 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725242661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.297 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds