Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35460 * 126.77632 * 2 1 4 4 C 1.41376 * 103.98211 * 180.14314 * 3 2 1 5 5 C 1.50709 * 126.80098 * 179.88941 * 4 3 2 6 6 N 1.46903 * 109.47149 * 94.70713 * 5 4 3 7 7 C 1.47960 * 110.99893 * 190.00258 * 6 5 4 8 8 C 1.53936 * 86.17683 * 222.41479 * 7 6 5 9 9 C 1.53003 * 113.72939 * 138.07996 * 8 7 6 10 10 H 1.09000 * 109.47265 * 305.18782 * 9 8 7 11 11 C 1.53002 * 109.47125 * 185.18843 * 9 8 7 12 12 N 1.46501 * 109.47050 * 65.18618 * 9 8 7 13 13 C 1.34781 * 119.99781 * 204.72150 * 12 9 8 14 14 O 1.21277 * 119.99937 * 0.27872 * 13 12 9 15 15 C 1.50700 * 119.99786 * 180.27918 * 13 12 9 16 16 S 1.80998 * 109.46976 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00160 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99387 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00295 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99701 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00237 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47062 * 59.99820 * 21 19 17 23 23 H 1.48503 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47066 * 299.99933 * 21 19 17 25 25 C 1.48188 * 111.07024 * 90.56760 * 6 5 4 26 26 N 1.30173 * 106.40011 * 359.62443 * 4 3 2 27 27 O 1.20922 * 111.60054 * 0.24056 * 26 4 3 28 28 H 1.08994 * 109.47006 * 180.30294 * 1 2 3 29 29 H 1.09002 * 109.46947 * 300.29935 * 1 2 3 30 30 H 1.09001 * 109.47283 * 60.29626 * 1 2 3 31 31 H 1.07995 * 128.00722 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46862 * 334.71211 * 5 4 3 33 33 H 1.09000 * 109.47107 * 214.70749 * 5 4 3 34 34 H 1.08998 * 113.75755 * 108.09647 * 7 6 5 35 35 H 1.08996 * 113.85817 * 336.74795 * 7 6 5 36 36 H 1.08996 * 113.73433 * 269.25297 * 8 7 6 37 37 H 1.08994 * 109.47273 * 175.96585 * 11 9 8 38 38 H 1.08997 * 109.46980 * 295.96934 * 11 9 8 39 39 H 1.08996 * 109.46912 * 55.96289 * 11 9 8 40 40 H 0.96995 * 119.99794 * 25.00183 * 12 9 8 41 41 H 1.09000 * 109.47206 * 300.00182 * 15 13 12 42 42 H 1.08994 * 109.47145 * 59.99825 * 15 13 12 43 43 H 0.97004 * 119.99745 * 179.97438 * 20 19 17 44 44 H 1.08992 * 113.75998 * 23.23933 * 25 6 5 45 45 H 1.08997 * 113.82186 * 251.80857 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0034 5 6 4.9211 1.3000 -0.0072 6 7 5.4048 1.4502 1.3718 7 6 6.5445 2.3917 1.4343 8 6 7.1881 1.3868 2.4067 9 6 8.6820 1.1643 2.1626 10 1 8.8407 0.8689 1.1254 11 6 9.1916 0.0600 3.0910 12 7 9.4113 2.4056 2.4338 13 6 10.6022 2.6301 1.8440 14 8 11.0676 1.8069 1.0847 15 6 11.3553 3.9042 2.1279 16 16 12.9052 3.9100 1.1930 17 6 13.5613 5.4653 1.6979 18 1 13.0103 6.0847 2.3902 19 6 14.7862 5.8945 1.2060 20 7 15.4574 5.1398 0.3619 21 14 15.4815 7.5437 1.7408 22 1 15.6648 7.5492 3.2144 23 1 16.7913 7.7672 1.0776 24 1 14.5408 8.6261 1.3549 25 6 6.2883 0.3230 1.7522 26 7 3.4764 -0.7563 0.0031 27 8 2.3095 -1.0735 0.0051 28 1 -0.3633 -1.0276 0.0054 29 1 -0.3633 0.5185 0.8873 30 1 -0.3634 0.5092 -0.8926 31 1 2.0345 2.1271 0.0004 32 1 4.7630 2.2852 -0.4461 33 1 5.6605 0.7551 -0.5942 34 1 6.2980 3.3497 1.8922 35 1 7.0818 2.4968 0.4919 36 1 6.9524 1.5769 3.4537 37 1 10.2379 -0.1482 2.8678 38 1 9.0988 0.3851 4.1272 39 1 8.6009 -0.8433 2.9394 40 1 9.0390 3.0640 3.0411 41 1 10.7484 4.7591 1.8298 42 1 11.5734 3.9675 3.1939 43 1 16.3133 5.4399 0.0178 44 1 6.7495 -0.1797 0.9022 45 1 5.8375 -0.3689 2.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725242661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = 27.096916 kcal Electronic energy + Delta-G solvation = -25851.305209 eV Core-core repulsion = 21998.323305 eV Total energy + Delta-G solvation = -3852.981904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.89641 -41.51166 -40.27644 -36.62123 -35.36106 -34.57854 -34.24686 -32.77172 -30.68049 -29.77207 -28.60507 -27.66245 -27.10512 -26.27225 -24.05511 -23.13098 -21.65138 -20.94714 -20.74106 -19.74750 -18.65802 -18.18431 -17.83904 -17.62665 -16.87284 -16.81539 -16.42265 -16.13260 -16.02171 -15.80930 -15.16466 -14.74228 -14.65671 -14.54900 -14.28412 -13.95408 -13.88373 -13.84240 -13.79860 -13.29135 -13.18153 -13.15944 -13.00519 -12.86090 -12.66769 -12.60344 -12.16993 -12.02866 -11.78687 -11.76551 -11.70486 -11.12400 -11.09463 -10.88002 -10.26700 -10.24476 -10.18175 -9.89332 -8.65969 -8.33982 -6.12098 0.54146 1.22858 1.27604 1.44224 1.47431 1.57058 1.64179 2.23931 2.26880 2.29396 2.81081 3.00145 3.23486 3.29393 3.38452 3.48673 3.61051 3.96308 4.04792 4.13124 4.13591 4.23803 4.25312 4.30995 4.35295 4.43080 4.44394 4.50399 4.52922 4.61895 4.68932 4.74732 4.75612 4.78637 4.89818 4.95873 5.03468 5.14176 5.19460 5.28589 5.30879 5.42071 5.52542 5.84066 6.20073 6.55182 7.07245 7.28769 7.33132 8.74909 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.001716 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.202143 B =16312.715925 C =16785.919890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.031 4.031 3 C -0.233 4.233 4 C 0.021 3.979 5 C 0.096 3.904 6 N -0.478 5.478 7 C 0.013 3.987 8 C -0.105 4.105 9 C 0.155 3.845 10 H 0.061 0.939 11 C -0.159 4.159 12 N -0.705 5.705 13 C 0.536 3.464 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.262 1.262 25 C 0.017 3.983 26 N -0.397 5.397 27 O 0.081 5.919 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.192 0.808 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.127 -6.300 4.771 34.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C -0.255 4.255 4 C -0.138 4.138 5 C -0.033 4.033 6 N -0.201 5.201 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.050 3.950 10 H 0.079 0.921 11 C -0.217 4.217 12 N -0.359 5.359 13 C 0.322 3.678 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.112 4.112 26 N -0.104 5.104 27 O 0.017 5.983 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.209 0.791 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -31.998 -8.602 3.760 33.347 hybrid contribution 0.676 2.300 0.396 2.430 sum -31.322 -6.302 4.156 32.219 Atomic orbital electron populations 1.20567 0.80948 1.05774 1.05694 1.25292 0.97977 0.85276 1.00896 1.22688 0.90355 1.02249 1.10158 1.23613 0.98176 0.89760 1.02257 1.20987 0.90459 0.99789 0.92020 1.68528 1.25188 1.06105 1.20255 1.23994 0.90195 0.98140 0.99192 1.23193 0.90792 0.96473 1.01932 1.20954 0.90391 0.84314 0.99385 0.92058 1.22116 1.00637 0.98722 1.00255 1.45753 1.19542 1.22181 1.48380 1.20045 0.81499 0.86917 0.79352 1.90692 1.68361 1.47945 1.37553 1.23374 1.00294 0.98936 1.05424 1.85594 1.18223 1.27846 1.60979 1.23186 1.08629 1.04886 1.32812 0.89841 1.26124 0.96095 1.02459 0.94436 1.70185 1.14719 1.39264 1.30643 0.85011 0.77374 0.76837 0.78817 1.18651 1.20477 1.18609 1.24009 0.92713 0.94541 0.99963 1.73831 0.97869 1.17462 1.21241 1.84774 1.11295 1.34397 1.67856 0.89104 0.87489 0.87373 0.79074 0.86943 0.92838 0.87085 0.91493 0.85612 0.94786 0.90671 0.90232 0.74596 0.87092 0.87279 0.92038 0.91568 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 71.24 0.74 0.49 16 2 C -0.03 -0.41 7.49 25.04 0.19 -0.22 16 3 C -0.23 -3.37 11.06 22.40 0.25 -3.12 16 4 C 0.02 0.41 6.89 43.58 0.30 0.71 16 5 C 0.10 1.70 5.39 85.56 0.46 2.16 16 6 N -0.48 -8.21 6.14 -911.77 -5.60 -13.82 16 7 C 0.01 0.20 7.39 86.41 0.64 0.84 16 8 C -0.10 -1.58 3.35 -10.15 -0.03 -1.61 16 9 C 0.15 3.31 2.28 44.99 0.10 3.42 16 10 H 0.06 1.68 7.49 -2.39 -0.02 1.66 16 11 C -0.16 -3.34 9.45 71.98 0.68 -2.66 16 12 N -0.70 -16.60 4.95 -442.52 -2.19 -18.79 16 13 C 0.54 19.20 7.81 87.66 0.68 19.89 16 14 O -0.57 -26.06 15.53 -3.02 -0.05 -26.11 16 15 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 16 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 17 C -0.55 -31.12 9.50 67.95 0.65 -30.48 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 21 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 C 0.02 0.30 7.35 86.37 0.63 0.93 16 26 N -0.40 -9.32 12.07 -49.57 -0.60 -9.92 16 27 O 0.08 1.63 11.20 71.69 0.80 2.43 16 28 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.05 1.05 7.39 -2.39 -0.02 1.03 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.18 7.88 -2.39 -0.02 1.17 16 36 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.40 7.99 -2.39 -0.02 1.38 16 40 H 0.42 6.81 8.60 -92.71 -0.80 6.02 16 41 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.07 1.30 7.38 -2.39 -0.02 1.28 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -81.22 395.01 -0.08 -81.30 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.20 Total: 17.94 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 6.20 Total: -12.97 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -8.10 Total: -98.33 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.76 Total: -23.68 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.22 -0.08 -81.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725242661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.396 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds