Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34043 * 126.77921 * 2 1 4 4 N 1.20914 * 111.57294 * 179.97438 * 3 2 1 5 5 C 1.30181 * 111.60048 * 359.74294 * 4 3 2 6 6 C 1.35453 * 126.78103 * 179.97438 * 2 1 3 7 7 C 1.50702 * 128.00274 * 359.96981 * 6 2 1 8 8 N 1.46898 * 109.47298 * 78.07350 * 7 6 2 9 9 C 1.46898 * 111.00100 * 85.93824 * 8 7 6 10 10 H 1.08995 * 109.47062 * 339.21892 * 9 8 7 11 11 C 1.52996 * 109.47147 * 219.21495 * 9 8 7 12 12 N 1.46503 * 109.47141 * 55.00351 * 11 9 8 13 13 C 1.34770 * 119.99734 * 179.72537 * 12 11 9 14 14 O 1.21286 * 120.00466 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47636 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00030 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00404 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99614 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00291 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47306 * 119.99431 * 21 19 17 24 24 H 1.48500 * 109.46831 * 239.99358 * 21 19 17 25 25 C 1.53005 * 109.46788 * 99.21690 * 9 8 7 26 26 C 1.52997 * 117.50095 * 6.09142 * 25 9 8 27 27 C 1.53002 * 117.49981 * 297.42821 * 25 9 8 28 28 H 1.09001 * 109.47293 * 274.70396 * 1 2 3 29 29 H 1.09001 * 109.46894 * 34.70262 * 1 2 3 30 30 H 1.09004 * 109.46987 * 154.70439 * 1 2 3 31 31 H 1.08003 * 126.79704 * 180.25082 * 5 4 3 32 32 H 1.08997 * 109.47280 * 318.07233 * 7 6 2 33 33 H 1.09002 * 109.47199 * 198.07668 * 7 6 2 34 34 H 1.00900 * 111.00217 * 321.98721 * 8 7 6 35 35 H 1.09006 * 109.47392 * 295.00277 * 11 9 8 36 36 H 1.09002 * 109.47070 * 174.99936 * 11 9 8 37 37 H 0.96993 * 120.00061 * 359.97438 * 12 11 9 38 38 H 1.09009 * 109.46864 * 299.99530 * 15 13 12 39 39 H 1.08999 * 109.47636 * 59.99387 * 15 13 12 40 40 H 0.97001 * 120.00007 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54776 * 151.76214 * 25 9 8 42 42 H 1.08998 * 117.50043 * 359.97438 * 26 25 9 43 43 H 1.09002 * 117.50093 * 145.01994 * 26 25 9 44 44 H 1.08998 * 117.50148 * 214.97960 * 27 25 9 45 45 H 1.09001 * 117.49585 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6213 -0.5372 0.0063 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0018 8 7 1.5172 -2.9375 -1.3528 9 6 2.6809 -3.3417 -2.1530 10 1 3.5862 -2.9200 -1.7164 11 6 2.5183 -2.8283 -3.5851 12 7 2.2995 -1.3799 -3.5627 13 6 2.1344 -0.7054 -4.7177 14 8 2.1675 -1.2974 -5.7758 15 6 1.9099 0.7846 -4.6948 16 16 1.7262 1.3933 -6.3895 17 6 1.4825 3.1095 -6.0733 18 1 1.4809 3.4766 -5.0577 19 6 1.2914 3.9894 -7.1297 20 7 1.2928 3.5418 -8.3676 21 14 1.0337 5.8090 -6.7946 22 1 1.0758 6.0535 -5.3305 23 1 2.1069 6.5915 -7.4587 24 1 -0.2871 6.2283 -7.3284 25 6 2.7847 -4.8682 -2.1672 26 6 1.6485 -5.6596 -1.5163 27 6 3.0134 -5.5732 -0.8287 28 1 -0.3634 0.0843 1.0242 29 1 -0.3633 0.8449 -0.5851 30 1 -0.3633 -0.9292 -0.4391 31 1 4.5528 -1.0838 0.0119 32 1 1.0897 -2.6885 0.6889 33 1 2.7699 -3.1459 0.3207 34 1 1.0040 -2.1981 -1.8089 35 1 1.6634 -3.3178 -4.0517 36 1 3.4202 -3.0507 -4.1554 37 1 2.2770 -0.9058 -2.7168 38 1 1.0055 1.0070 -4.1284 39 1 2.7628 1.2734 -4.2240 40 1 1.1596 4.1568 -9.1058 41 1 3.2568 -5.2991 -3.0501 42 1 0.8273 -5.0929 -1.0777 43 1 1.3734 -6.6114 -1.9708 44 1 3.6356 -6.4681 -0.8310 45 1 3.0904 -4.9495 0.0619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731391233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = 53.781063 kcal Electronic energy + Delta-G solvation = -27501.952442 eV Core-core repulsion = 23650.127649 eV Total energy + Delta-G solvation = -3851.824793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.23271 -39.82427 -38.56675 -36.10046 -34.76779 -33.45758 -32.95273 -32.43012 -30.48019 -28.71946 -27.93501 -25.64742 -25.43756 -23.46450 -22.99944 -22.41445 -21.19104 -20.40664 -20.02834 -18.04382 -17.87928 -17.45740 -16.67677 -16.24912 -16.12999 -15.65537 -15.17568 -14.88961 -14.80330 -14.72893 -14.35148 -14.14946 -13.80905 -13.58350 -13.40101 -13.16724 -13.03805 -12.90666 -12.59439 -12.45743 -12.05650 -11.78618 -11.65749 -11.49659 -11.19387 -11.06946 -11.02280 -10.76667 -10.68161 -10.47981 -10.19727 -9.81445 -9.62072 -9.46404 -9.08667 -8.99455 -8.91839 -8.25007 -6.51040 -6.22142 -3.92780 1.12807 1.89887 2.79799 2.96262 3.02788 3.21730 3.27623 3.32427 3.53012 3.63467 3.87587 4.00572 4.19893 4.24583 4.34175 4.44706 4.58674 4.64160 4.80614 4.90635 5.04612 5.05861 5.06333 5.10991 5.13205 5.14494 5.26725 5.33126 5.36843 5.48399 5.53129 5.55181 5.59543 5.74719 5.75036 5.84051 5.84847 5.93617 6.10053 6.17902 6.47804 6.52208 6.87952 7.55017 7.60295 7.97877 8.35469 8.52693 9.23528 10.85322 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003187 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.874768 B = 8783.609634 C =10416.504531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.016 4.016 3 O 0.103 5.897 4 N -0.358 5.358 5 C -0.003 4.003 6 C -0.254 4.254 7 C 0.132 3.868 8 N -0.673 5.673 9 C 0.105 3.895 10 H 0.063 0.937 11 C 0.114 3.886 12 N -0.744 5.744 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.153 4.153 16 S -0.057 6.057 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.390 0.610 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.268 0.732 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -15.925 22.066 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 O 0.037 5.963 4 N -0.060 5.060 5 C -0.183 4.183 6 C -0.260 4.260 7 C 0.003 3.997 8 N -0.305 5.305 9 C -0.005 4.005 10 H 0.081 0.919 11 C -0.011 4.011 12 N -0.400 5.400 13 C 0.319 3.681 14 O -0.385 6.385 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.168 4.168 26 C -0.193 4.193 27 C -0.220 4.220 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.204 0.796 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.224 0.776 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.745 -16.487 20.247 26.121 hybrid contribution 0.196 2.215 1.668 2.779 sum 0.942 -14.272 21.915 26.169 Atomic orbital electron populations 1.20471 0.83781 1.05301 1.04474 1.24490 0.96465 0.85854 1.01271 1.84888 1.11390 1.33118 1.66925 1.73967 0.97060 1.16760 1.18215 1.24966 0.99601 0.90381 1.03329 1.22102 0.92513 0.99131 1.12255 1.20612 1.01345 0.86092 0.91693 1.60838 1.22966 1.43882 1.02764 1.21289 0.92667 0.94172 0.92339 0.91885 1.21560 1.02968 0.80654 0.95886 1.46105 1.76595 1.08215 1.09054 1.20307 0.75381 0.89226 0.83180 1.90711 1.48072 1.69836 1.29902 1.23527 1.04505 0.93640 1.08709 1.85380 1.94152 1.06007 0.97473 1.22906 1.57113 0.92563 0.95721 0.90881 1.24991 0.94631 0.99515 0.94416 1.70027 1.46467 1.35439 0.98350 0.86123 0.78008 0.82885 0.78545 1.19558 1.20554 1.20530 1.22209 1.05159 0.92436 0.96978 1.22935 0.92732 1.00578 1.03024 1.22954 1.00960 1.02360 0.95721 0.89098 0.89106 0.88718 0.79597 0.89047 0.89479 0.82966 0.90367 0.90770 0.77603 0.89377 0.89514 0.92228 0.87514 0.86727 0.89787 0.89376 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.33 36.00 0.37 -0.09 16 2 C -0.02 -0.13 7.49 -35.30 -0.26 -0.40 16 3 O 0.10 1.19 11.20 17.17 0.19 1.38 16 4 N -0.36 -4.42 12.07 30.35 0.37 -4.05 16 5 C 0.00 -0.03 12.16 -17.06 -0.21 -0.24 16 6 C -0.25 -1.97 4.67 -104.42 -0.49 -2.45 16 7 C 0.13 0.77 5.84 -4.98 -0.03 0.74 16 8 N -0.67 -4.72 4.64 -108.00 -0.50 -5.22 16 9 C 0.11 0.86 2.42 -67.71 -0.16 0.69 16 10 H 0.06 0.52 7.50 -51.93 -0.39 0.13 16 11 C 0.11 1.30 5.18 -4.04 -0.02 1.28 16 12 N -0.74 -10.07 4.91 -60.29 -0.30 -10.37 16 13 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 14 O -0.51 -11.65 15.86 5.55 0.09 -11.56 16 15 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 17 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.15 -1.12 5.72 -90.62 -0.52 -1.64 16 26 C -0.16 -1.11 9.85 -26.69 -0.26 -1.37 16 27 C -0.18 -1.18 10.04 -26.69 -0.27 -1.45 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.42 7.63 -51.93 -0.40 0.03 16 31 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.47 5.74 -51.93 -0.30 0.17 16 34 H 0.35 2.82 6.28 -39.29 -0.25 2.58 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.39 4.63 6.87 -40.82 -0.28 4.35 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.11 0.85 6.92 -51.93 -0.36 0.49 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.53 6.06 -51.93 -0.31 0.22 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -34.74 388.58 -8.79 -43.53 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.48 Total: 4.09 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.52 Total: -10.93 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.30 Total: -45.17 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.28 Total: -10.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.74 -8.79 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731391233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.311 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds