Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34043 * 126.77921 * 2 1 4 4 N 1.20914 * 111.57294 * 179.97438 * 3 2 1 5 5 C 1.30181 * 111.60048 * 359.74294 * 4 3 2 6 6 C 1.35453 * 126.78103 * 179.97438 * 2 1 3 7 7 C 1.50702 * 128.00274 * 359.96981 * 6 2 1 8 8 N 1.46898 * 109.47298 * 78.07350 * 7 6 2 9 9 C 1.46898 * 111.00100 * 85.93824 * 8 7 6 10 10 H 1.08995 * 109.47062 * 339.21892 * 9 8 7 11 11 C 1.52996 * 109.47147 * 219.21495 * 9 8 7 12 12 N 1.46503 * 109.47141 * 55.00351 * 11 9 8 13 13 C 1.34770 * 119.99734 * 179.72537 * 12 11 9 14 14 O 1.21286 * 120.00466 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47636 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00030 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00404 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99614 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00291 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47306 * 119.99431 * 21 19 17 24 24 H 1.48500 * 109.46831 * 239.99358 * 21 19 17 25 25 C 1.53005 * 109.46788 * 99.21690 * 9 8 7 26 26 C 1.52997 * 117.50095 * 6.09142 * 25 9 8 27 27 C 1.53002 * 117.49981 * 297.42821 * 25 9 8 28 28 H 1.09001 * 109.47293 * 274.70396 * 1 2 3 29 29 H 1.09001 * 109.46894 * 34.70262 * 1 2 3 30 30 H 1.09004 * 109.46987 * 154.70439 * 1 2 3 31 31 H 1.08003 * 126.79704 * 180.25082 * 5 4 3 32 32 H 1.08997 * 109.47280 * 318.07233 * 7 6 2 33 33 H 1.09002 * 109.47199 * 198.07668 * 7 6 2 34 34 H 1.00900 * 111.00217 * 321.98721 * 8 7 6 35 35 H 1.09006 * 109.47392 * 295.00277 * 11 9 8 36 36 H 1.09002 * 109.47070 * 174.99936 * 11 9 8 37 37 H 0.96993 * 120.00061 * 359.97438 * 12 11 9 38 38 H 1.09009 * 109.46864 * 299.99530 * 15 13 12 39 39 H 1.08999 * 109.47636 * 59.99387 * 15 13 12 40 40 H 0.97001 * 120.00007 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54776 * 151.76214 * 25 9 8 42 42 H 1.08998 * 117.50043 * 359.97438 * 26 25 9 43 43 H 1.09002 * 117.50093 * 145.01994 * 26 25 9 44 44 H 1.08998 * 117.50148 * 214.97960 * 27 25 9 45 45 H 1.09001 * 117.49585 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6213 -0.5372 0.0063 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0018 8 7 1.5172 -2.9375 -1.3528 9 6 2.6809 -3.3417 -2.1530 10 1 3.5862 -2.9200 -1.7164 11 6 2.5183 -2.8283 -3.5851 12 7 2.2995 -1.3799 -3.5627 13 6 2.1344 -0.7054 -4.7177 14 8 2.1675 -1.2974 -5.7758 15 6 1.9099 0.7846 -4.6948 16 16 1.7262 1.3933 -6.3895 17 6 1.4825 3.1095 -6.0733 18 1 1.4809 3.4766 -5.0577 19 6 1.2914 3.9894 -7.1297 20 7 1.2928 3.5418 -8.3676 21 14 1.0337 5.8090 -6.7946 22 1 1.0758 6.0535 -5.3305 23 1 2.1069 6.5915 -7.4587 24 1 -0.2871 6.2283 -7.3284 25 6 2.7847 -4.8682 -2.1672 26 6 1.6485 -5.6596 -1.5163 27 6 3.0134 -5.5732 -0.8287 28 1 -0.3634 0.0843 1.0242 29 1 -0.3633 0.8449 -0.5851 30 1 -0.3633 -0.9292 -0.4391 31 1 4.5528 -1.0838 0.0119 32 1 1.0897 -2.6885 0.6889 33 1 2.7699 -3.1459 0.3207 34 1 1.0040 -2.1981 -1.8089 35 1 1.6634 -3.3178 -4.0517 36 1 3.4202 -3.0507 -4.1554 37 1 2.2770 -0.9058 -2.7168 38 1 1.0055 1.0070 -4.1284 39 1 2.7628 1.2734 -4.2240 40 1 1.1596 4.1568 -9.1058 41 1 3.2568 -5.2991 -3.0501 42 1 0.8273 -5.0929 -1.0777 43 1 1.3734 -6.6114 -1.9708 44 1 3.6356 -6.4681 -0.8310 45 1 3.0904 -4.9495 0.0619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731391233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = 30.446346 kcal Electronic energy + Delta-G solvation = -27502.964311 eV Core-core repulsion = 23650.127649 eV Total energy + Delta-G solvation = -3852.836662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.96040 -40.98057 -39.57867 -36.70667 -35.87750 -34.61310 -34.16825 -33.72979 -31.71800 -29.81476 -28.63014 -27.69410 -26.25251 -24.33681 -23.67045 -22.95181 -22.07660 -21.54327 -20.70909 -19.92213 -18.66224 -18.33791 -17.89558 -17.48577 -17.07599 -16.90793 -16.55851 -16.13276 -16.02073 -15.64799 -15.48695 -14.93159 -14.77289 -14.62605 -14.37216 -14.27345 -13.96007 -13.87835 -13.49739 -13.32165 -13.19541 -13.01178 -12.93094 -12.82498 -12.61509 -12.29597 -12.07669 -11.76043 -11.73508 -11.39611 -11.19109 -11.18378 -10.94720 -10.76098 -10.33565 -10.30879 -10.23299 -9.52160 -8.70529 -8.37625 -6.15977 0.46528 1.21328 1.22334 1.39234 1.42804 1.48410 1.55403 2.12654 2.19314 2.23936 2.94926 2.96619 3.23316 3.27362 3.38669 3.63793 3.66636 3.78890 3.84391 4.00097 4.04108 4.15389 4.20625 4.34923 4.38492 4.39133 4.51002 4.53010 4.64519 4.68949 4.75702 4.77494 4.86904 4.95593 4.98792 5.06155 5.17685 5.25291 5.30065 5.39383 5.42636 5.63781 5.92093 6.17208 6.22973 6.24754 7.03899 7.07116 7.27579 8.71807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003187 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.874768 B = 8783.609634 C =10416.504531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.018 4.018 3 O 0.075 5.925 4 N -0.399 5.399 5 C -0.004 4.004 6 C -0.249 4.249 7 C 0.137 3.863 8 N -0.667 5.667 9 C 0.119 3.881 10 H 0.069 0.931 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.536 3.464 14 O -0.555 6.555 15 C -0.130 4.130 16 S -0.139 6.139 17 C -0.548 4.548 18 H 0.079 0.921 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.997 3.003 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.160 4.160 26 C -0.157 4.157 27 C -0.170 4.170 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.204 0.796 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.344 0.656 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.272 0.728 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -16.377 24.745 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 O 0.013 5.987 4 N -0.106 5.106 5 C -0.183 4.183 6 C -0.255 4.255 7 C 0.008 3.992 8 N -0.299 5.299 9 C 0.008 3.992 10 H 0.087 0.913 11 C -0.011 4.011 12 N -0.371 5.371 13 C 0.322 3.678 14 O -0.433 6.433 15 C -0.281 4.281 16 S 0.089 5.911 17 C -0.696 4.696 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.179 4.179 26 C -0.194 4.194 27 C -0.206 4.206 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.221 0.779 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.263 -16.958 22.986 28.566 hybrid contribution 0.349 2.220 0.924 2.429 sum 0.612 -14.738 23.911 28.095 Atomic orbital electron populations 1.20648 0.81826 1.05836 1.05777 1.25091 0.97548 0.85419 1.00247 1.84841 1.11584 1.34439 1.67810 1.73969 0.97740 1.18356 1.20533 1.25423 1.01091 0.89903 1.01927 1.22293 0.91544 0.99875 1.11774 1.20753 1.02568 0.84794 0.91100 1.60890 1.22229 1.43648 1.03096 1.21161 0.93324 0.94635 0.90035 0.91317 1.21722 1.02229 0.78737 0.98406 1.45827 1.74297 1.09146 1.07855 1.19992 0.75409 0.88509 0.83905 1.90701 1.50515 1.70319 1.31732 1.23349 1.05828 0.94983 1.03984 1.85506 1.94512 1.07086 1.04037 1.23208 1.57297 0.92823 0.96223 0.90260 1.26100 0.93899 1.04932 0.93991 1.70176 1.47407 1.37453 0.99531 0.84932 0.78216 0.75977 0.79003 1.18254 1.19934 1.19547 1.22167 1.06125 0.91840 0.97806 1.22952 0.92951 1.00448 1.03073 1.23012 1.00224 1.02277 0.95130 0.87184 0.89553 0.87290 0.77869 0.87119 0.88338 0.83538 0.91159 0.91576 0.76242 0.87311 0.88674 0.91889 0.88014 0.86726 0.89800 0.88832 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.33 71.24 0.74 0.01 16 2 C -0.02 -0.28 7.49 25.04 0.19 -0.09 16 3 O 0.08 1.70 11.20 71.61 0.80 2.50 16 4 N -0.40 -9.63 12.07 -59.28 -0.72 -10.35 16 5 C 0.00 -0.08 12.16 85.71 1.04 0.97 16 6 C -0.25 -3.25 4.67 -19.74 -0.09 -3.34 16 7 C 0.14 1.13 5.84 85.56 0.50 1.63 16 8 N -0.67 -7.49 4.64 -495.59 -2.30 -9.79 16 9 C 0.12 1.67 2.42 44.92 0.11 1.78 16 10 H 0.07 0.93 7.50 -2.39 -0.02 0.91 16 11 C 0.11 2.47 5.18 86.38 0.45 2.91 16 12 N -0.72 -18.62 4.91 -463.06 -2.27 -20.89 16 13 C 0.54 20.23 7.85 87.66 0.69 20.92 16 14 O -0.56 -25.84 15.86 -3.05 -0.05 -25.89 16 15 C -0.13 -5.38 6.16 71.24 0.44 -4.94 16 16 S -0.14 -7.78 20.57 -56.49 -1.16 -8.95 16 17 C -0.55 -31.75 9.50 67.96 0.65 -31.11 16 18 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 19 C 0.02 0.91 5.49 84.86 0.47 1.37 16 20 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 21 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 C -0.16 -2.08 5.72 -10.79 -0.06 -2.14 16 26 C -0.16 -1.86 9.85 30.62 0.30 -1.56 16 27 C -0.17 -1.69 10.04 30.62 0.31 -1.38 16 28 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.65 7.63 -2.38 -0.02 0.63 16 31 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.65 5.74 -2.39 -0.01 0.64 16 34 H 0.34 4.65 6.28 -89.69 -0.56 4.09 16 35 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.40 8.83 6.87 -92.71 -0.64 8.19 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.09 3.77 8.14 -2.40 -0.02 3.75 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 42 H 0.11 1.38 6.92 -2.39 -0.02 1.36 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.80 6.06 -2.39 -0.01 0.78 16 Total: -1.00 -77.71 388.58 2.16 -75.56 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.17 Total: 22.39 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.71 Total: -14.98 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -5.00 Total: -96.79 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.75 Total: -23.39 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.95 kcal Total: -77.71 2.16 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731391233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.002 kcal (2) G-P(sol) polarization free energy of solvation -77.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds