Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29022 * 124.91415 * 2 1 4 4 C 1.31782 * 117.12541 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.75359 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47575 * 90.01804 * 5 4 3 7 7 O 1.21281 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99882 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99409 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46731 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.50832 * 304.89779 * 10 9 8 12 12 C 1.52875 * 109.58203 * 184.88574 * 10 9 8 13 13 N 1.47151 * 108.60696 * 187.92468 * 12 10 9 14 14 C 1.36943 * 120.97773 * 230.49979 * 13 12 10 15 15 H 1.08003 * 119.99858 * 153.47834 * 14 13 12 16 16 C 1.38807 * 119.99844 * 333.74609 * 14 13 12 17 17 N 1.31621 * 120.00233 * 342.94715 * 16 14 13 18 18 Si 1.86803 * 119.99741 * 162.94240 * 16 14 13 19 19 H 1.48506 * 109.47318 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47150 * 120.00115 * 18 16 14 21 21 H 1.48496 * 109.47445 * 240.00301 * 18 16 14 22 22 C 1.47150 * 118.03722 * 50.22401 * 13 12 10 23 23 C 1.53296 * 108.38369 * 309.71328 * 22 13 12 24 24 O 1.42957 * 109.51526 * 65.00007 * 10 9 8 25 25 C 1.33646 * 114.49874 * 0.22733 * 4 3 2 26 26 C 1.50699 * 126.03556 * 179.76984 * 25 4 3 27 27 S 1.70973 * 124.91742 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46881 * 90.00721 * 1 2 3 29 29 H 1.08998 * 109.47241 * 210.00149 * 1 2 3 30 30 H 1.08996 * 109.47723 * 330.00533 * 1 2 3 31 31 H 1.09009 * 109.46570 * 330.01917 * 5 4 3 32 32 H 1.08999 * 109.47262 * 210.02561 * 5 4 3 33 33 H 0.96998 * 120.00004 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47009 * 60.00880 * 9 8 6 35 35 H 1.08994 * 109.47189 * 299.99581 * 9 8 6 36 36 H 1.08993 * 109.62441 * 68.09922 * 12 10 9 37 37 H 1.09008 * 109.52236 * 307.68162 * 12 10 9 38 38 H 0.97004 * 119.99999 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.68539 * 69.44307 * 22 13 12 40 40 H 1.09007 * 109.68045 * 189.95855 * 22 13 12 41 41 H 1.09004 * 109.50856 * 172.22651 * 23 22 13 42 42 H 1.08997 * 109.51493 * 292.38079 * 23 22 13 43 43 H 1.09005 * 109.47183 * 90.00345 * 26 25 4 44 44 H 1.08996 * 109.46873 * 210.00007 * 26 25 4 45 45 H 1.08997 * 109.47365 * 330.00400 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.8571 2.4071 1.4206 7 8 4.3452 1.8084 2.3428 8 7 5.7181 3.4145 1.6663 9 6 6.0358 3.7860 3.0474 10 6 7.0293 4.9496 3.0468 11 1 7.9063 4.6792 2.4585 12 6 7.4561 5.2597 4.4817 13 7 8.2562 6.4947 4.4770 14 6 9.4763 6.5463 5.0967 15 1 10.2256 7.2457 4.7564 16 6 9.7519 5.6960 6.1586 17 7 8.7683 5.0883 6.7876 18 14 11.5189 5.4139 6.6950 19 1 12.4307 6.2081 5.8328 20 1 11.6808 5.8383 8.1088 21 1 11.8500 3.9718 6.5700 22 6 7.7093 7.6705 3.7816 23 6 7.2728 7.2413 2.3762 24 8 6.4103 6.1057 2.4776 25 6 3.9354 -0.4006 -0.0038 26 6 5.3575 -0.8993 -0.0093 27 16 2.4856 -1.4019 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 4.0904 2.8789 -0.5143 32 1 5.4431 1.7220 -0.5137 33 1 6.1272 3.8936 0.9288 34 1 6.4767 2.9317 3.5611 35 1 5.1234 4.0880 3.5615 36 1 8.0541 4.4363 4.8718 37 1 6.5712 5.3980 5.1031 38 1 8.9610 4.4937 7.5295 39 1 6.8506 8.0557 4.3313 40 1 8.4750 8.4430 3.7088 41 1 6.7401 8.0612 1.8942 42 1 8.1511 6.9799 1.7861 43 1 5.7033 -1.0222 1.0171 44 1 5.4042 -1.8580 -0.5257 45 1 5.9934 -0.1784 -0.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732381938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -20.361263 kcal Electronic energy + Delta-G solvation = -26908.675238 eV Core-core repulsion = 23053.635393 eV Total energy + Delta-G solvation = -3855.039845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.45969 -39.19017 -38.33779 -34.80222 -34.31718 -34.01965 -31.49528 -31.15877 -30.60075 -29.73334 -27.33768 -25.74890 -24.97559 -23.34551 -23.06535 -21.69902 -20.59048 -19.62552 -18.95629 -18.14370 -17.16134 -16.92988 -16.06891 -15.76974 -15.36670 -15.12468 -14.98326 -14.66604 -14.34188 -14.02124 -13.77906 -13.70902 -13.56779 -13.41928 -13.27021 -13.00474 -12.89954 -12.85048 -12.56402 -12.36775 -12.27363 -11.79345 -11.53934 -11.29244 -11.12820 -10.88032 -10.74101 -10.43538 -10.27262 -10.05522 -9.81218 -9.75357 -9.66534 -9.33566 -9.10044 -8.84691 -8.71060 -8.57818 -6.78462 -5.87194 -3.30998 0.55611 1.16557 1.55093 2.55539 2.78112 3.31506 3.39516 3.41765 3.43941 3.90574 4.24667 4.41466 4.58404 4.78645 4.81086 4.95893 5.04407 5.08042 5.17002 5.18149 5.28168 5.33636 5.38124 5.53184 5.56681 5.62093 5.65140 5.73770 5.84427 5.91230 6.00391 6.04676 6.11656 6.23491 6.35855 6.48942 6.67116 6.76447 7.04233 7.45352 7.62889 7.66814 7.68696 7.82672 8.30097 8.37905 9.07897 9.71064 10.28014 11.20940 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.002254 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.187217 B =12419.633692 C =13171.505461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 N -0.459 5.459 4 C 0.085 3.915 5 C -0.068 4.068 6 C 0.515 3.485 7 O -0.535 6.535 8 N -0.721 5.721 9 C 0.134 3.866 10 C 0.056 3.944 11 H 0.055 0.945 12 C 0.152 3.848 13 N -0.595 5.595 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.109 3.891 23 C 0.050 3.950 24 O -0.390 6.390 25 C -0.209 4.209 26 C -0.077 4.077 27 S 0.109 5.891 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.401 0.599 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.255 0.745 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -11.087 -18.304 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.234 4.234 3 N -0.173 5.173 4 C -0.046 4.046 5 C -0.111 4.111 6 C 0.300 3.700 7 O -0.411 6.411 8 N -0.372 5.372 9 C 0.010 3.990 10 C -0.003 4.003 11 H 0.073 0.927 12 C 0.025 3.975 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.018 4.018 23 C -0.028 4.028 24 O -0.309 6.309 25 C -0.330 4.330 26 C -0.136 4.136 27 S 0.364 5.636 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.235 0.765 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.923 -12.174 -17.510 24.432 hybrid contribution 1.911 0.889 0.215 2.119 sum -10.011 -11.285 -17.295 22.949 Atomic orbital electron populations 1.20419 0.85221 1.04270 1.03660 1.26804 1.01548 0.90748 1.04294 1.65987 1.04362 1.31701 1.15249 1.19280 0.89738 0.92775 1.02847 1.20186 0.97995 0.96962 0.95923 1.20279 0.78934 0.80087 0.90715 1.90721 1.51380 1.52946 1.46099 1.45955 1.46336 1.35282 1.09634 1.21390 0.99344 0.96127 0.82151 1.23051 0.93614 0.84733 0.98924 0.92664 1.21218 0.95488 0.91425 0.89351 1.44043 1.19666 1.05638 1.62498 1.19221 0.89091 1.20584 1.09625 0.91305 1.25063 0.97590 1.01247 0.95750 1.70035 1.29658 1.32742 1.22061 0.86199 0.84433 0.77802 0.78195 1.20226 1.21591 1.21433 1.21605 0.97297 0.91159 0.91704 1.23004 0.93524 0.88074 0.98195 1.87794 1.39118 1.20992 1.83010 1.25579 1.00300 0.95565 1.11514 1.20278 0.88555 1.01357 1.03384 1.83779 0.97646 1.12670 1.69461 0.89727 0.90201 0.89228 0.87149 0.87365 0.76457 0.89994 0.90802 0.88620 0.95109 0.93441 0.95533 0.91965 0.90002 0.93873 0.90109 0.91089 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 36.01 0.38 -0.19 16 2 C 0.04 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.46 -6.38 10.53 -8.06 -0.08 -6.46 16 4 C 0.09 1.11 5.23 -84.23 -0.44 0.67 16 5 C -0.07 -0.76 5.88 -29.04 -0.17 -0.93 16 6 C 0.52 7.66 7.82 -10.99 -0.09 7.58 16 7 O -0.54 -10.30 16.03 5.56 0.09 -10.21 16 8 N -0.72 -10.18 5.50 -60.29 -0.33 -10.51 16 9 C 0.13 2.29 5.34 -4.04 -0.02 2.27 16 10 C 0.06 1.06 2.80 -26.79 -0.07 0.98 16 11 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 12 C 0.15 3.57 4.71 -3.75 -0.02 3.56 16 13 N -0.59 -14.76 3.05 -172.08 -0.53 -15.29 16 14 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 15 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 16 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 17 N -0.90 -25.83 11.15 55.49 0.62 -25.21 16 18 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 C 0.11 2.25 6.74 -3.53 -0.02 2.23 16 23 C 0.05 0.87 6.99 37.31 0.26 1.13 16 24 O -0.39 -7.22 10.33 -35.23 -0.36 -7.59 16 25 C -0.21 -2.39 6.59 -35.92 -0.24 -2.62 16 26 C -0.08 -0.67 10.10 36.00 0.36 -0.30 16 27 S 0.11 1.09 23.18 -107.50 -2.49 -1.40 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.11 0.85 6.71 -51.93 -0.35 0.50 16 33 H 0.40 4.67 8.47 -40.82 -0.35 4.33 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 2.47 6.15 -51.93 -0.32 2.15 16 37 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.21 7.96 -51.92 -0.41 0.80 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -34.46 383.41 -9.57 -44.02 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.82 Total: 2.93 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.40 Total: 7.70 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.32 Total: -57.48 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.27 Total: -17.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.46 -9.57 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732381938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.662 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds