Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29022 * 124.91415 * 2 1 4 4 C 1.31782 * 117.12541 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.75359 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47575 * 90.01804 * 5 4 3 7 7 O 1.21281 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99882 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99409 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46731 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.50832 * 304.89779 * 10 9 8 12 12 C 1.52875 * 109.58203 * 184.88574 * 10 9 8 13 13 N 1.47151 * 108.60696 * 187.92468 * 12 10 9 14 14 C 1.36943 * 120.97773 * 230.49979 * 13 12 10 15 15 H 1.08003 * 119.99858 * 153.47834 * 14 13 12 16 16 C 1.38807 * 119.99844 * 333.74609 * 14 13 12 17 17 N 1.31621 * 120.00233 * 342.94715 * 16 14 13 18 18 Si 1.86803 * 119.99741 * 162.94240 * 16 14 13 19 19 H 1.48506 * 109.47318 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47150 * 120.00115 * 18 16 14 21 21 H 1.48496 * 109.47445 * 240.00301 * 18 16 14 22 22 C 1.47150 * 118.03722 * 50.22401 * 13 12 10 23 23 C 1.53296 * 108.38369 * 309.71328 * 22 13 12 24 24 O 1.42957 * 109.51526 * 65.00007 * 10 9 8 25 25 C 1.33646 * 114.49874 * 0.22733 * 4 3 2 26 26 C 1.50699 * 126.03556 * 179.76984 * 25 4 3 27 27 S 1.70973 * 124.91742 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46881 * 90.00721 * 1 2 3 29 29 H 1.08998 * 109.47241 * 210.00149 * 1 2 3 30 30 H 1.08996 * 109.47723 * 330.00533 * 1 2 3 31 31 H 1.09009 * 109.46570 * 330.01917 * 5 4 3 32 32 H 1.08999 * 109.47262 * 210.02561 * 5 4 3 33 33 H 0.96998 * 120.00004 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47009 * 60.00880 * 9 8 6 35 35 H 1.08994 * 109.47189 * 299.99581 * 9 8 6 36 36 H 1.08993 * 109.62441 * 68.09922 * 12 10 9 37 37 H 1.09008 * 109.52236 * 307.68162 * 12 10 9 38 38 H 0.97004 * 119.99999 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.68539 * 69.44307 * 22 13 12 40 40 H 1.09007 * 109.68045 * 189.95855 * 22 13 12 41 41 H 1.09004 * 109.50856 * 172.22651 * 23 22 13 42 42 H 1.08997 * 109.51493 * 292.38079 * 23 22 13 43 43 H 1.09005 * 109.47183 * 90.00345 * 26 25 4 44 44 H 1.08996 * 109.46873 * 210.00007 * 26 25 4 45 45 H 1.08997 * 109.47365 * 330.00400 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.8571 2.4071 1.4206 7 8 4.3452 1.8084 2.3428 8 7 5.7181 3.4145 1.6663 9 6 6.0358 3.7860 3.0474 10 6 7.0293 4.9496 3.0468 11 1 7.9063 4.6792 2.4585 12 6 7.4561 5.2597 4.4817 13 7 8.2562 6.4947 4.4770 14 6 9.4763 6.5463 5.0967 15 1 10.2256 7.2457 4.7564 16 6 9.7519 5.6960 6.1586 17 7 8.7683 5.0883 6.7876 18 14 11.5189 5.4139 6.6950 19 1 12.4307 6.2081 5.8328 20 1 11.6808 5.8383 8.1088 21 1 11.8500 3.9718 6.5700 22 6 7.7093 7.6705 3.7816 23 6 7.2728 7.2413 2.3762 24 8 6.4103 6.1057 2.4776 25 6 3.9354 -0.4006 -0.0038 26 6 5.3575 -0.8993 -0.0093 27 16 2.4856 -1.4019 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 4.0904 2.8789 -0.5143 32 1 5.4431 1.7220 -0.5137 33 1 6.1272 3.8936 0.9288 34 1 6.4767 2.9317 3.5611 35 1 5.1234 4.0880 3.5615 36 1 8.0541 4.4363 4.8718 37 1 6.5712 5.3980 5.1031 38 1 8.9610 4.4937 7.5295 39 1 6.8506 8.0557 4.3313 40 1 8.4750 8.4430 3.7088 41 1 6.7401 8.0612 1.8942 42 1 8.1511 6.9799 1.7861 43 1 5.7033 -1.0222 1.0171 44 1 5.4042 -1.8580 -0.5257 45 1 5.9934 -0.1784 -0.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732381938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -45.177848 kcal Electronic energy + Delta-G solvation = -26909.751366 eV Core-core repulsion = 23053.635393 eV Total energy + Delta-G solvation = -3856.115973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43326 -40.46439 -39.76693 -36.46673 -35.83878 -34.83254 -33.27796 -32.70813 -31.37477 -30.69973 -29.02278 -27.22272 -25.97286 -25.07864 -24.01222 -23.19611 -21.86830 -21.22466 -19.81604 -19.05176 -18.86434 -18.21284 -17.53844 -17.09911 -16.95383 -16.28040 -16.13008 -15.95935 -15.68614 -15.52156 -15.12284 -15.05010 -14.61539 -14.43260 -14.39163 -14.29475 -14.15937 -13.89313 -13.62674 -13.20769 -13.11472 -13.04354 -13.02102 -12.72307 -12.68679 -12.51830 -12.19782 -12.07374 -12.06160 -11.87766 -11.32157 -11.06887 -10.79724 -10.59881 -10.56629 -10.14976 -10.13976 -9.52995 -8.77206 -7.92590 -5.40331 -0.25892 0.39681 0.73650 1.45107 1.47027 1.57750 1.61510 1.63837 2.29502 2.47699 2.78280 3.15251 3.22636 3.48635 3.74090 3.94450 4.05232 4.06274 4.07665 4.12442 4.27080 4.32733 4.44332 4.47191 4.52355 4.58050 4.61335 4.66210 4.67714 4.69649 4.81885 4.91479 4.95048 4.97163 5.05897 5.09765 5.21476 5.28599 5.37203 5.50953 5.59063 6.25642 6.31904 6.54894 6.80700 7.03822 7.24176 7.72929 8.26667 9.13555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.002254 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.187217 B =12419.633692 C =13171.505461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.029 3.971 3 N -0.497 5.497 4 C 0.057 3.943 5 C -0.059 4.059 6 C 0.515 3.485 7 O -0.584 6.584 8 N -0.707 5.707 9 C 0.145 3.855 10 C 0.078 3.922 11 H 0.069 0.931 12 C 0.158 3.842 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.075 0.925 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.289 1.289 22 C 0.101 3.899 23 C 0.057 3.943 24 O -0.391 6.391 25 C -0.221 4.221 26 C -0.078 4.078 27 S 0.140 5.860 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.417 0.583 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.067 0.933 37 H -0.004 1.004 38 H 0.251 0.749 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -11.261 -21.055 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.249 4.249 3 N -0.212 5.212 4 C -0.074 4.074 5 C -0.101 4.101 6 C 0.303 3.697 7 O -0.464 6.464 8 N -0.360 5.360 9 C 0.020 3.980 10 C 0.019 3.981 11 H 0.087 0.913 12 C 0.032 3.968 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.093 0.907 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.215 1.215 22 C -0.025 4.025 23 C -0.020 4.020 24 O -0.310 6.310 25 C -0.342 4.342 26 C -0.136 4.136 27 S 0.395 5.605 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.222 -12.311 -20.325 26.279 hybrid contribution 1.627 0.982 1.093 2.192 sum -9.595 -11.329 -19.232 24.296 Atomic orbital electron populations 1.20579 0.83083 1.04825 1.05108 1.27442 1.03097 0.90953 1.03395 1.66023 1.05146 1.33178 1.16853 1.19595 0.89951 0.93838 1.04060 1.20230 0.99433 0.97256 0.93154 1.20965 0.77751 0.79099 0.91933 1.90702 1.53111 1.54556 1.47993 1.45756 1.46282 1.35312 1.08637 1.21023 0.97808 0.95255 0.83875 1.22655 0.94371 0.85375 0.95705 0.91268 1.20999 0.93432 0.90462 0.91929 1.44351 1.19480 1.07258 1.62795 1.19592 0.90130 1.20245 1.09411 0.90690 1.25866 1.01277 1.01468 0.96157 1.70203 1.31662 1.33699 1.22702 0.85159 0.80068 0.77510 0.77411 1.18645 1.22135 1.21521 1.21841 0.97050 0.90265 0.93302 1.23087 0.94502 0.88512 0.95936 1.87808 1.39631 1.21174 1.82414 1.26008 1.01918 0.95649 1.10649 1.20384 0.87286 1.02860 1.03116 1.83585 0.96693 1.11574 1.68636 0.87738 0.88312 0.89951 0.85752 0.83701 0.74559 0.90866 0.93024 0.91450 0.98635 0.93982 0.96885 0.90808 0.86159 0.92443 0.91288 0.89199 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.46 71.24 0.75 -0.31 16 2 C 0.03 0.63 7.39 88.52 0.65 1.29 16 3 N -0.50 -13.60 10.53 -179.41 -1.89 -15.49 16 4 C 0.06 1.42 5.23 41.52 0.22 1.64 16 5 C -0.06 -1.21 5.88 29.10 0.17 -1.04 16 6 C 0.52 14.96 7.82 87.66 0.69 15.65 16 7 O -0.58 -22.88 16.03 -3.03 -0.05 -22.93 16 8 N -0.71 -19.15 5.50 -463.05 -2.55 -21.70 16 9 C 0.15 5.05 5.34 86.38 0.46 5.51 16 10 C 0.08 2.91 2.80 30.55 0.09 2.99 16 11 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 12 C 0.16 7.70 4.71 86.21 0.41 8.10 16 13 N -0.61 -30.69 3.05 -698.35 -2.13 -32.82 16 14 C -0.26 -14.24 9.65 84.03 0.81 -13.43 16 15 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 16 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 17 N -0.94 -55.54 11.15 21.65 0.24 -55.30 16 18 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 C 0.10 4.07 6.74 86.35 0.58 4.65 16 23 C 0.06 1.80 6.99 72.08 0.50 2.31 16 24 O -0.39 -13.76 10.33 -148.98 -1.54 -15.30 16 25 C -0.22 -4.78 6.59 24.64 0.16 -4.62 16 26 C -0.08 -1.21 10.10 71.24 0.72 -0.49 16 27 S 0.14 2.62 23.18 -56.49 -1.31 1.32 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.15 1.81 6.71 -2.39 -0.02 1.79 16 33 H 0.42 8.64 8.47 -92.71 -0.79 7.85 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 3.64 6.15 -2.39 -0.01 3.63 16 37 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 2.76 7.96 -2.38 -0.02 2.74 16 41 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 1.12 6.76 -2.39 -0.02 1.11 16 Total: -1.00 -77.40 383.41 -0.35 -77.75 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.22 Total: 18.57 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.62 Total: 19.79 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.33 Total: -125.31 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.59 Total: -38.23 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.32 kcal Total: -77.40 -0.35 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732381938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.568 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds