Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29432 * 124.79991 * 2 1 4 4 C 1.30944 * 117.36104 * 179.73189 * 3 2 1 5 5 C 1.50696 * 122.90747 * 180.34488 * 4 3 2 6 6 C 1.35662 * 114.19200 * 0.51901 * 4 3 2 7 7 C 1.46677 * 126.13545 * 179.78966 * 6 4 3 8 8 O 1.21693 * 119.99643 * 324.27297 * 7 6 4 9 9 N 1.34772 * 120.00544 * 144.27351 * 7 6 4 10 10 C 1.47153 * 120.98002 * 354.24644 * 9 7 6 11 11 C 1.53288 * 108.39033 * 230.56094 * 10 9 7 12 12 O 1.42965 * 109.22106 * 307.70041 * 11 10 9 13 13 C 1.42964 * 114.16858 * 62.57817 * 12 11 10 14 14 H 1.09007 * 109.54935 * 57.36765 * 13 12 11 15 15 C 1.52998 * 109.51644 * 177.49463 * 13 12 11 16 16 H 1.08996 * 109.47659 * 174.75041 * 15 13 12 17 17 C 1.53004 * 109.46909 * 54.74764 * 15 13 12 18 18 N 1.46500 * 109.47185 * 294.74907 * 15 13 12 19 19 C 1.36934 * 120.00420 * 204.99732 * 18 15 13 20 20 H 1.08000 * 119.99513 * 0.02562 * 19 18 15 21 21 C 1.38813 * 120.00568 * 179.97438 * 19 18 15 22 22 N 1.31611 * 120.00030 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99603 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47187 * 89.99789 * 23 21 19 25 25 H 1.48503 * 109.46656 * 209.99853 * 23 21 19 26 26 H 1.48504 * 109.47066 * 329.99104 * 23 21 19 27 27 C 1.47152 * 120.98595 * 174.27819 * 9 7 6 28 28 S 1.70948 * 124.80565 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47183 * 269.98059 * 1 2 3 30 30 H 1.08998 * 109.47581 * 29.97592 * 1 2 3 31 31 H 1.09001 * 109.47251 * 149.98190 * 1 2 3 32 32 H 1.09004 * 109.47391 * 270.19307 * 5 4 3 33 33 H 1.09005 * 109.47129 * 30.18606 * 5 4 3 34 34 H 1.08997 * 109.47312 * 150.18934 * 5 4 3 35 35 H 1.09006 * 109.67881 * 110.83352 * 10 9 7 36 36 H 1.08998 * 109.68374 * 350.28971 * 10 9 7 37 37 H 1.09000 * 109.51366 * 67.62330 * 11 10 9 38 38 H 1.09000 * 109.51571 * 187.77972 * 11 10 9 39 39 H 1.08992 * 109.47437 * 59.99855 * 17 15 13 40 40 H 1.09000 * 109.47178 * 180.02562 * 17 15 13 41 41 H 1.08999 * 109.46798 * 299.99922 * 17 15 13 42 42 H 0.97006 * 120.00380 * 24.99777 * 18 15 13 43 43 H 0.97005 * 119.99902 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.67861 * 249.16230 * 27 9 7 45 45 H 1.08997 * 109.68026 * 9.71713 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0054 5 6 4.5197 2.0418 0.0137 6 6 3.9352 -0.4057 -0.0008 7 6 5.3188 -0.8924 -0.0013 8 8 6.1776 -0.2840 -0.6122 9 7 5.6392 -2.0134 0.6748 10 6 4.6485 -2.6963 1.5220 11 6 5.2750 -2.9379 2.8999 12 8 6.5327 -3.5977 2.7360 13 6 7.5027 -2.8372 2.0117 14 1 7.6643 -1.8819 2.5112 15 6 8.8203 -3.6126 1.9532 16 1 9.5299 -3.0764 1.3231 17 6 8.5679 -5.0034 1.3676 18 7 9.3699 -3.7442 3.3048 19 6 10.7163 -3.9194 3.4824 20 1 11.3731 -3.9602 2.6260 21 6 11.2372 -4.0436 4.7631 22 7 12.5312 -4.2125 4.9336 23 14 10.1012 -3.9724 6.2443 24 1 9.6286 -5.3415 6.5719 25 1 10.8371 -3.4115 7.4058 26 1 8.9350 -3.1075 5.9326 27 6 6.9901 -2.5904 0.5882 28 16 2.4828 -1.4036 -0.0006 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 4.7570 2.3244 -1.0119 33 1 4.0755 2.8922 0.5312 34 1 5.4321 1.7398 0.5278 35 1 4.3748 -3.6500 1.0708 36 1 3.7617 -2.0712 1.6264 37 1 5.4277 -1.9830 3.4030 38 1 4.6112 -3.5629 3.4973 39 1 8.1590 -4.9056 0.3620 40 1 9.5065 -5.5561 1.3263 41 1 7.8584 -5.5397 1.9977 42 1 8.7801 -3.7073 4.0740 43 1 12.8953 -4.2989 5.8286 44 1 6.9522 -3.5335 0.0431 45 1 7.6539 -1.8952 0.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734185723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -10.032616 kcal Electronic energy + Delta-G solvation = -27767.293262 eV Core-core repulsion = 23912.701300 eV Total energy + Delta-G solvation = -3854.591961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89424 -40.02278 -38.43831 -35.76164 -34.75399 -33.47748 -32.52880 -30.76871 -29.70586 -29.21978 -28.79351 -26.98307 -24.89789 -23.56048 -23.33703 -22.64629 -21.02937 -19.86619 -18.93765 -18.46074 -17.73251 -17.19572 -16.64770 -16.07845 -15.85598 -15.47205 -15.15243 -14.87169 -14.64756 -14.46439 -14.20582 -13.85214 -13.74990 -13.37437 -13.31421 -12.99144 -12.90717 -12.75267 -12.59668 -12.57388 -12.32938 -12.14211 -11.77563 -11.64648 -11.32736 -10.97846 -10.80168 -10.71035 -10.51237 -10.28415 -10.07435 -10.06324 -9.96952 -9.68601 -9.57471 -9.08420 -8.92616 -8.68337 -7.25926 -5.75253 -3.10491 -0.11079 0.71051 1.12658 2.09933 2.51192 2.80909 3.40360 3.45046 3.47498 3.54281 3.76909 4.17308 4.43123 4.53003 4.61883 4.67791 4.72889 4.84327 4.89203 4.90698 4.95565 5.15403 5.24392 5.28485 5.40157 5.43294 5.49651 5.52638 5.53730 5.54581 5.64877 5.68013 5.83406 5.94881 6.06949 6.18080 6.32284 6.45628 6.72580 6.98059 7.05718 7.24478 7.26363 7.78144 8.00859 8.43897 9.23007 9.95350 10.16135 11.42949 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.002744 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.534472 B =10199.853048 C =10369.610145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.053 3.947 3 N -0.477 5.477 4 C 0.147 3.853 5 C -0.082 4.082 6 C -0.300 4.300 7 C 0.599 3.401 8 O -0.517 6.517 9 N -0.607 5.607 10 C 0.062 3.938 11 C 0.049 3.951 12 O -0.361 6.361 13 C 0.071 3.929 14 H 0.066 0.934 15 C 0.191 3.809 16 H 0.069 0.931 17 C -0.163 4.163 18 N -0.744 5.744 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.085 3.915 28 S 0.173 5.827 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.366 0.634 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.801 6.660 -10.784 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.223 4.223 3 N -0.193 5.193 4 C 0.010 3.990 5 C -0.141 4.141 6 C -0.423 4.423 7 C 0.385 3.615 8 O -0.394 6.394 9 N -0.341 5.341 10 C -0.062 4.062 11 C -0.029 4.029 12 O -0.279 6.279 13 C 0.012 3.988 14 H 0.084 0.916 15 C 0.081 3.919 16 H 0.087 0.913 17 C -0.223 4.223 18 N -0.387 5.387 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.037 4.037 28 S 0.431 5.569 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.199 0.801 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.551 6.180 -11.081 30.332 hybrid contribution -0.379 0.866 1.090 1.443 sum -27.930 7.046 -9.991 30.489 Atomic orbital electron populations 1.20540 0.84632 1.04642 1.04347 1.27531 1.02275 0.91813 1.00652 1.66100 1.04287 1.31426 1.17440 1.20609 0.90018 0.93476 0.94919 1.20493 0.95918 0.93736 1.03978 1.25382 0.98033 0.97273 1.21629 1.16721 0.85510 0.80078 0.79204 1.90848 1.48783 1.55989 1.43790 1.48006 1.13441 1.25961 1.46708 1.22795 0.92013 0.98543 0.92864 1.22885 0.86965 0.98728 0.94359 1.88082 1.21449 1.42971 1.75366 1.23051 0.89922 0.95944 0.89884 0.91609 1.20169 0.89122 0.93877 0.88762 0.91296 1.22387 1.01832 0.99582 0.98503 1.42698 1.05777 1.88733 1.01462 1.19072 0.82174 1.41903 0.94111 0.89131 1.24651 0.95505 1.01907 0.97017 1.69701 1.10432 1.56537 1.21486 0.86536 0.80384 0.77907 0.83650 1.21060 1.21889 1.20322 1.22548 0.82303 0.99924 0.98900 1.84031 0.95609 1.10897 1.66373 0.89011 0.88890 0.89715 0.89509 0.90377 0.89875 0.89785 0.89180 0.92761 0.87549 0.94330 0.92316 0.92515 0.80082 0.93085 0.89590 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.46 36.01 0.38 0.03 16 2 C 0.05 0.43 7.38 -13.29 -0.10 0.33 16 3 N -0.48 -5.16 10.50 -7.71 -0.08 -5.24 16 4 C 0.15 1.71 6.79 -83.89 -0.57 1.14 16 5 C -0.08 -0.87 9.57 36.00 0.34 -0.52 16 6 C -0.30 -3.47 5.58 -37.10 -0.21 -3.68 16 7 C 0.60 8.17 7.21 -12.86 -0.09 8.08 16 8 O -0.52 -8.47 15.13 5.19 0.08 -8.39 16 9 N -0.61 -7.63 3.02 -173.82 -0.52 -8.16 16 10 C 0.06 0.62 5.72 -3.54 -0.02 0.60 16 11 C 0.05 0.55 6.98 37.31 0.26 0.81 16 12 O -0.36 -5.56 9.24 -35.23 -0.33 -5.89 16 13 C 0.07 1.14 2.61 -26.58 -0.07 1.07 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 15 C 0.19 3.62 2.77 -67.93 -0.19 3.43 16 16 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 17 C -0.16 -2.83 9.06 37.16 0.34 -2.49 16 18 N -0.74 -17.67 4.91 -53.43 -0.26 -17.93 16 19 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 23 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 27 C 0.09 1.17 5.84 -3.54 -0.02 1.15 16 28 S 0.17 1.39 19.87 -107.50 -2.14 -0.75 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.96 7.09 -51.93 -0.37 0.59 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.77 4.52 -34.47 -0.16 0.61 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.55 6.42 -51.93 -0.33 0.21 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.01 7.55 -51.93 -0.39 0.62 16 42 H 0.37 8.77 5.45 -40.82 -0.22 8.54 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.09 1.10 6.27 -51.93 -0.33 0.77 16 45 H 0.11 1.52 7.06 -51.93 -0.37 1.15 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.76 371.22 -8.20 -42.96 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.40 Total: 5.72 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.20 Total: 3.00 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.09 Total: -59.98 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.25 Total: -14.28 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.14 Total: -0.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.76 -8.20 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734185723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.925 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds