Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34036 * 126.77664 * 2 1 4 4 N 1.20927 * 111.56765 * 179.97438 * 3 2 1 5 5 C 1.30172 * 111.60264 * 0.02562 * 4 3 2 6 6 C 1.35451 * 126.77327 * 179.68137 * 2 1 3 7 7 C 1.50697 * 128.01138 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47081 * 79.99760 * 7 6 2 9 9 C 1.46904 * 110.99886 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64251 * 34.29588 * 9 8 7 11 11 C 1.55159 * 110.71929 * 271.15632 * 9 8 7 12 12 C 1.54906 * 101.58355 * 206.13444 * 11 9 8 13 13 N 1.47434 * 104.82985 * 37.01132 * 12 11 9 14 14 C 1.34770 * 125.64546 * 155.84135 * 13 12 11 15 15 O 1.21288 * 119.99761 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00250 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47347 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00357 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00298 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99933 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99807 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46646 * 90.00638 * 22 20 18 24 24 H 1.48492 * 109.47474 * 210.00510 * 22 20 18 25 25 H 1.48503 * 109.47319 * 330.00896 * 22 20 18 26 26 C 1.47313 * 108.73369 * 335.71075 * 13 12 11 27 27 H 1.09000 * 109.84817 * 120.61533 * 26 13 12 28 28 C 1.52998 * 110.06625 * 241.87303 * 26 13 12 29 29 H 1.09002 * 109.47152 * 0.02611 * 1 2 3 30 30 H 1.09001 * 109.46980 * 240.02711 * 1 2 3 31 31 H 1.09004 * 109.47113 * 120.02692 * 1 2 3 32 32 H 1.07997 * 126.80320 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46974 * 200.00017 * 7 6 2 34 34 H 1.09001 * 109.47035 * 319.99989 * 7 6 2 35 35 H 1.00900 * 111.00183 * 56.04865 * 8 7 6 36 36 H 1.09005 * 111.00287 * 324.20893 * 11 9 8 37 37 H 1.09002 * 111.00462 * 88.01599 * 11 9 8 38 38 H 1.09003 * 110.36731 * 155.84529 * 12 11 9 39 39 H 1.08991 * 110.36789 * 278.06088 * 12 11 9 40 40 H 1.09000 * 109.47454 * 300.00388 * 16 14 13 41 41 H 1.09003 * 109.47372 * 60.00424 * 16 14 13 42 42 H 0.97004 * 119.99767 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.47269 * 177.73558 * 28 26 13 44 44 H 1.09001 * 109.47391 * 297.73568 * 28 26 13 45 45 H 1.08997 * 109.46791 * 57.73942 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 0.0005 5 6 3.6214 -0.5373 0.0004 6 6 2.3179 -1.0850 0.0060 7 6 1.9224 -2.5391 0.0136 8 7 1.5623 -2.9557 -1.3483 9 6 1.1697 -4.3709 -1.3794 10 1 0.6558 -4.6475 -0.4589 11 6 2.4065 -5.2787 -1.6115 12 6 1.7603 -6.5218 -2.2723 13 7 0.6930 -5.9797 -3.1330 14 6 0.1747 -6.5875 -4.2185 15 8 -0.7042 -6.0458 -4.8550 16 6 0.6872 -7.9401 -4.6414 17 16 -0.2000 -8.4856 -6.1217 18 6 0.5760 -10.0452 -6.3863 19 1 1.3523 -10.3828 -5.7156 20 6 0.1905 -10.8395 -7.4573 21 7 0.7699 -12.0048 -7.6546 22 14 -1.1518 -10.2553 -8.6178 23 1 -0.5425 -9.4833 -9.7305 24 1 -1.8759 -11.4291 -9.1680 25 1 -2.1038 -9.3889 -7.8774 26 6 0.2843 -4.6651 -2.6086 27 1 0.4389 -3.8992 -3.3686 28 6 -1.1878 -4.7003 -2.1932 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5134 0.8902 31 1 -0.3633 -0.5143 -0.8898 32 1 4.5528 -1.0839 0.0011 33 1 2.7588 -3.1412 0.3686 34 1 1.0672 -2.6796 0.6746 35 1 2.3170 -2.7752 -1.9931 36 1 3.1188 -4.8035 -2.2861 37 1 2.8818 -5.5406 -0.6662 38 1 2.4958 -7.0579 -2.8722 39 1 1.3395 -7.1798 -1.5122 40 1 1.7527 -7.8726 -4.8610 41 1 0.5269 -8.6574 -3.8364 42 1 0.5001 -12.5600 -8.4028 43 1 -1.4690 -3.7360 -1.7698 44 1 -1.8068 -4.9084 -3.0659 45 1 -1.3363 -5.4815 -1.4477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734390722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = 29.004676 kcal Electronic energy + Delta-G solvation = -26502.389280 eV Core-core repulsion = 22649.490103 eV Total energy + Delta-G solvation = -3852.899177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.30437 -40.25204 -38.02908 -36.18904 -33.92454 -33.48555 -32.45024 -31.79514 -30.87192 -28.88818 -28.15326 -26.57826 -25.62231 -24.52039 -23.00975 -22.82203 -21.41988 -20.96831 -19.03647 -17.99800 -17.69881 -17.45857 -16.91766 -16.51446 -15.85893 -15.28372 -15.06135 -14.95978 -14.80449 -14.25324 -14.05624 -13.89328 -13.78929 -13.55564 -13.49707 -13.09855 -12.96798 -12.79716 -12.73325 -12.59888 -12.50935 -12.18915 -11.85824 -11.71837 -11.47157 -11.27817 -11.26358 -11.02298 -10.95324 -10.73549 -10.60747 -9.86438 -9.59792 -9.46611 -9.01323 -8.88486 -8.59385 -8.50457 -6.92941 -6.29969 -4.01684 1.07140 1.80242 2.64718 2.71727 2.95582 3.15719 3.32662 3.49982 3.57295 3.75255 3.88750 4.18859 4.19713 4.21212 4.32457 4.46347 4.59651 4.66297 4.71545 4.92066 4.94957 5.01842 5.02614 5.05530 5.09141 5.18207 5.19627 5.28015 5.34066 5.40016 5.45747 5.48581 5.51133 5.66482 5.67972 5.69408 5.78935 5.98148 5.99708 6.22922 6.39442 6.55947 6.84210 7.58581 7.86794 7.93020 8.40232 8.45409 9.16254 10.79192 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.001971 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.124712 B =14202.397388 C =14565.725126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 O 0.093 5.907 4 N -0.368 5.368 5 C -0.002 4.002 6 C -0.211 4.211 7 C 0.141 3.859 8 N -0.675 5.675 9 C 0.082 3.918 10 H 0.097 0.903 11 C -0.165 4.165 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.548 3.452 15 O -0.514 6.514 16 C -0.118 4.118 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.147 3.853 27 H 0.081 0.919 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.348 0.652 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.271 0.729 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 21.170 20.986 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 O 0.029 5.971 4 N -0.072 5.072 5 C -0.181 4.181 6 C -0.216 4.216 7 C 0.012 3.988 8 N -0.306 5.306 9 C -0.028 4.028 10 H 0.115 0.885 11 C -0.204 4.204 12 C -0.021 4.021 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.389 6.389 16 C -0.269 4.269 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.043 3.957 27 H 0.099 0.901 28 C -0.215 4.215 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.205 0.795 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.759 23.050 19.904 30.506 hybrid contribution 1.453 -2.001 0.254 2.486 sum 3.212 21.049 20.158 29.321 Atomic orbital electron populations 1.20396 0.83686 1.04439 1.04728 1.24399 0.96370 0.85578 1.00438 1.84827 1.11474 1.33310 1.67503 1.73902 0.97203 1.16803 1.19308 1.24943 0.99704 0.90409 1.03032 1.20945 0.91982 0.97147 1.11500 1.20063 0.99959 0.87836 0.90923 1.60381 1.44880 1.18049 1.07248 1.22699 0.94965 0.86408 0.98760 0.88487 1.23520 0.98135 0.97310 1.01475 1.22207 0.89978 0.95928 0.93995 1.48612 1.39219 1.20131 1.28111 1.19939 0.81622 0.86459 0.78318 1.90697 1.29922 1.65661 1.52573 1.23263 1.04339 0.95548 1.03706 1.84789 1.51948 1.23875 1.30908 1.22305 1.25300 1.01974 1.17282 0.89432 1.24715 0.96072 0.93933 0.96610 1.69937 1.41350 1.10320 1.30066 0.86733 0.83169 0.79625 0.82317 1.19203 1.19941 1.15901 1.21411 0.94259 0.85264 0.94723 0.90089 1.22069 0.95587 1.01567 1.02296 0.90142 0.89244 0.88129 0.79533 0.93507 0.89521 0.83284 0.90309 0.89873 0.90135 0.91171 0.88738 0.88634 0.91942 0.91615 0.90995 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.28 36.01 0.37 0.07 16 2 C 0.00 -0.02 7.49 -35.30 -0.26 -0.29 16 3 O 0.09 0.85 11.20 17.18 0.19 1.04 16 4 N -0.37 -3.65 12.07 30.36 0.37 -3.29 16 5 C 0.00 -0.01 12.16 -17.06 -0.21 -0.22 16 6 C -0.21 -1.39 5.84 -104.42 -0.61 -2.00 16 7 C 0.14 0.70 5.96 -4.98 -0.03 0.67 16 8 N -0.67 -4.13 6.28 -106.05 -0.67 -4.80 16 9 C 0.08 0.57 2.77 -65.87 -0.18 0.39 16 10 H 0.10 0.60 7.56 -51.93 -0.39 0.20 16 11 C -0.16 -1.07 6.67 -24.58 -0.16 -1.23 16 12 C 0.10 0.96 6.69 -2.53 -0.02 0.95 16 13 N -0.62 -8.13 3.08 -162.80 -0.50 -8.63 16 14 C 0.55 9.85 7.67 -10.99 -0.08 9.76 16 15 O -0.51 -11.06 14.94 5.55 0.08 -10.98 16 16 C -0.12 -2.29 5.16 36.00 0.19 -2.11 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.45 13.97 55.49 0.78 -25.68 16 22 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C 0.15 1.59 3.22 -66.79 -0.22 1.37 16 27 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 28 C -0.16 -1.72 9.11 37.16 0.34 -1.38 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.35 2.25 8.25 -39.29 -0.32 1.92 16 36 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.72 7.85 -51.92 -0.41 1.32 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -34.73 386.98 -8.21 -42.94 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.92 Total: -1.91 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.66 Total: -5.98 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.03 Total: -42.39 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.28 Total: -9.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.73 -8.21 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734390722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.943 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds