Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34036 * 126.77664 * 2 1 4 4 N 1.20927 * 111.56765 * 179.97438 * 3 2 1 5 5 C 1.30172 * 111.60264 * 0.02562 * 4 3 2 6 6 C 1.35451 * 126.77327 * 179.68137 * 2 1 3 7 7 C 1.50697 * 128.01138 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47081 * 79.99760 * 7 6 2 9 9 C 1.46904 * 110.99886 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64251 * 34.29588 * 9 8 7 11 11 C 1.55159 * 110.71929 * 271.15632 * 9 8 7 12 12 C 1.54906 * 101.58355 * 206.13444 * 11 9 8 13 13 N 1.47434 * 104.82985 * 37.01132 * 12 11 9 14 14 C 1.34770 * 125.64546 * 155.84135 * 13 12 11 15 15 O 1.21288 * 119.99761 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00250 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47347 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00357 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00298 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99933 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99807 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46646 * 90.00638 * 22 20 18 24 24 H 1.48492 * 109.47474 * 210.00510 * 22 20 18 25 25 H 1.48503 * 109.47319 * 330.00896 * 22 20 18 26 26 C 1.47313 * 108.73369 * 335.71075 * 13 12 11 27 27 H 1.09000 * 109.84817 * 120.61533 * 26 13 12 28 28 C 1.52998 * 110.06625 * 241.87303 * 26 13 12 29 29 H 1.09002 * 109.47152 * 0.02611 * 1 2 3 30 30 H 1.09001 * 109.46980 * 240.02711 * 1 2 3 31 31 H 1.09004 * 109.47113 * 120.02692 * 1 2 3 32 32 H 1.07997 * 126.80320 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46974 * 200.00017 * 7 6 2 34 34 H 1.09001 * 109.47035 * 319.99989 * 7 6 2 35 35 H 1.00900 * 111.00183 * 56.04865 * 8 7 6 36 36 H 1.09005 * 111.00287 * 324.20893 * 11 9 8 37 37 H 1.09002 * 111.00462 * 88.01599 * 11 9 8 38 38 H 1.09003 * 110.36731 * 155.84529 * 12 11 9 39 39 H 1.08991 * 110.36789 * 278.06088 * 12 11 9 40 40 H 1.09000 * 109.47454 * 300.00388 * 16 14 13 41 41 H 1.09003 * 109.47372 * 60.00424 * 16 14 13 42 42 H 0.97004 * 119.99767 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.47269 * 177.73558 * 28 26 13 44 44 H 1.09001 * 109.47391 * 297.73568 * 28 26 13 45 45 H 1.08997 * 109.46791 * 57.73942 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 0.0005 5 6 3.6214 -0.5373 0.0004 6 6 2.3179 -1.0850 0.0060 7 6 1.9224 -2.5391 0.0136 8 7 1.5623 -2.9557 -1.3483 9 6 1.1697 -4.3709 -1.3794 10 1 0.6558 -4.6475 -0.4589 11 6 2.4065 -5.2787 -1.6115 12 6 1.7603 -6.5218 -2.2723 13 7 0.6930 -5.9797 -3.1330 14 6 0.1747 -6.5875 -4.2185 15 8 -0.7042 -6.0458 -4.8550 16 6 0.6872 -7.9401 -4.6414 17 16 -0.2000 -8.4856 -6.1217 18 6 0.5760 -10.0452 -6.3863 19 1 1.3523 -10.3828 -5.7156 20 6 0.1905 -10.8395 -7.4573 21 7 0.7699 -12.0048 -7.6546 22 14 -1.1518 -10.2553 -8.6178 23 1 -0.5425 -9.4833 -9.7305 24 1 -1.8759 -11.4291 -9.1680 25 1 -2.1038 -9.3889 -7.8774 26 6 0.2843 -4.6651 -2.6086 27 1 0.4389 -3.8992 -3.3686 28 6 -1.1878 -4.7003 -2.1932 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5134 0.8902 31 1 -0.3633 -0.5143 -0.8898 32 1 4.5528 -1.0839 0.0011 33 1 2.7588 -3.1412 0.3686 34 1 1.0672 -2.6796 0.6746 35 1 2.3170 -2.7752 -1.9931 36 1 3.1188 -4.8035 -2.2861 37 1 2.8818 -5.5406 -0.6662 38 1 2.4958 -7.0579 -2.8722 39 1 1.3395 -7.1798 -1.5122 40 1 1.7527 -7.8726 -4.8610 41 1 0.5269 -8.6574 -3.8364 42 1 0.5001 -12.5600 -8.4028 43 1 -1.4690 -3.7360 -1.7698 44 1 -1.8068 -4.9084 -3.0659 45 1 -1.3363 -5.4815 -1.4477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734390722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = 5.004311 kcal Electronic energy + Delta-G solvation = -26503.430014 eV Core-core repulsion = 22649.490103 eV Total energy + Delta-G solvation = -3853.939911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.86112 -41.27190 -39.06708 -36.87672 -34.68870 -34.60424 -33.99624 -32.72886 -31.74507 -30.05140 -28.74758 -27.85384 -27.15556 -25.19169 -23.87868 -23.40628 -22.02447 -21.59192 -20.37579 -19.47201 -18.58416 -18.10702 -17.99339 -17.46870 -17.11083 -16.70781 -16.14606 -16.07258 -15.66548 -15.48530 -15.03606 -14.91174 -14.62479 -14.57102 -14.03901 -13.96040 -13.89866 -13.81275 -13.61878 -13.35380 -13.25723 -13.11281 -13.01276 -12.98663 -12.76048 -12.70141 -12.45233 -12.00230 -11.91132 -11.87697 -11.67637 -11.30232 -11.18013 -10.90420 -10.54392 -10.08899 -9.69968 -9.33547 -9.01318 -8.52406 -6.23407 0.55598 0.96003 1.28497 1.30683 1.45226 1.53169 1.55858 2.05451 2.24309 2.25767 2.67870 2.85750 3.18916 3.42597 3.47225 3.58045 3.75629 3.85140 4.00394 4.10068 4.16428 4.22074 4.26019 4.36347 4.39771 4.45917 4.57181 4.63684 4.72357 4.75116 4.77705 4.80157 4.82790 4.96638 5.03044 5.10465 5.11056 5.14401 5.32262 5.33817 5.47871 5.69900 6.03663 6.10205 6.35531 6.40879 6.92751 7.11522 7.32952 8.59850 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.001971 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.124712 B =14202.397388 C =14565.725126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.008 4.008 3 O 0.071 5.929 4 N -0.406 5.406 5 C -0.002 4.002 6 C -0.214 4.214 7 C 0.147 3.853 8 N -0.679 5.679 9 C 0.100 3.900 10 H 0.117 0.883 11 C -0.152 4.152 12 C 0.090 3.910 13 N -0.613 5.613 14 C 0.547 3.453 15 O -0.560 6.560 16 C -0.102 4.102 17 S -0.176 6.176 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.237 1.237 26 C 0.141 3.859 27 H 0.061 0.939 28 C -0.151 4.151 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.208 0.792 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.346 0.654 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.277 0.723 43 H 0.088 0.912 44 H 0.031 0.969 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 21.882 23.137 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 O 0.011 5.989 4 N -0.114 5.114 5 C -0.181 4.181 6 C -0.218 4.218 7 C 0.018 3.982 8 N -0.310 5.310 9 C -0.011 4.011 10 H 0.135 0.865 11 C -0.191 4.191 12 C -0.033 4.033 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.439 6.439 16 C -0.253 4.253 17 S 0.051 5.949 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.161 1.161 26 C 0.038 3.962 27 H 0.080 0.920 28 C -0.209 4.209 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.225 0.775 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.050 0.950 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.909 23.780 22.108 32.525 hybrid contribution 1.501 -2.165 -0.273 2.648 sum 3.410 21.615 21.835 30.913 Atomic orbital electron populations 1.20520 0.81822 1.05235 1.05485 1.24998 0.97479 0.85295 0.99513 1.84786 1.11601 1.34356 1.68204 1.73895 0.97827 1.18253 1.21380 1.25417 1.01100 0.89968 1.01609 1.21164 0.91388 0.97960 1.11305 1.20119 1.01135 0.86722 0.90185 1.60295 1.45185 1.17415 1.08086 1.22521 0.94392 0.86983 0.97203 0.86495 1.23513 0.97712 0.95335 1.02575 1.22586 0.89095 0.97738 0.93866 1.48567 1.38967 1.20683 1.26621 1.19597 0.81514 0.85916 0.79534 1.90680 1.32070 1.66541 1.54563 1.23211 1.04077 0.97051 1.00958 1.84723 1.53185 1.22081 1.34918 1.22435 1.24767 1.03522 1.16828 0.91949 1.25553 0.98161 0.94094 0.98159 1.70011 1.42846 1.11400 1.31074 0.85876 0.80652 0.79604 0.80294 1.18753 1.18227 1.16142 1.21625 0.95261 0.83355 0.95977 0.92037 1.22001 0.94970 1.03102 1.00804 0.89482 0.87388 0.88151 0.77490 0.91833 0.88210 0.83446 0.90347 0.86752 0.90362 0.89441 0.87485 0.87272 0.91347 0.89309 0.94965 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.28 71.24 0.73 0.30 16 2 C -0.01 -0.10 7.49 25.04 0.19 0.08 16 3 O 0.07 1.27 11.20 71.66 0.80 2.08 16 4 N -0.41 -7.87 12.07 -59.26 -0.72 -8.58 16 5 C 0.00 -0.03 12.16 85.71 1.04 1.01 16 6 C -0.21 -2.29 5.84 -19.73 -0.12 -2.41 16 7 C 0.15 0.87 5.96 85.56 0.51 1.38 16 8 N -0.68 -5.98 6.28 -489.45 -3.07 -9.06 16 9 C 0.10 0.99 2.77 46.10 0.13 1.12 16 10 H 0.12 0.81 7.56 -2.39 -0.02 0.79 16 11 C -0.15 -1.33 6.67 31.99 0.21 -1.12 16 12 C 0.09 1.40 6.69 86.85 0.58 1.98 16 13 N -0.61 -15.02 3.08 -787.37 -2.42 -17.45 16 14 C 0.55 19.45 7.67 87.66 0.67 20.12 16 15 O -0.56 -24.52 14.94 -3.05 -0.05 -24.56 16 16 C -0.10 -3.93 5.16 71.23 0.37 -3.56 16 17 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 18 C -0.53 -30.79 10.04 67.96 0.68 -30.11 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 22 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 23 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 26 C 0.14 2.77 3.22 45.28 0.15 2.92 16 27 H 0.06 1.48 8.03 -2.39 -0.02 1.46 16 28 C -0.15 -3.07 9.11 71.98 0.66 -2.42 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.62 16 32 H 0.21 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.10 0.39 8.08 -2.39 -0.02 0.37 16 35 H 0.35 3.46 8.25 -89.69 -0.74 2.72 16 36 H 0.08 0.75 7.79 -2.38 -0.02 0.73 16 37 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 1.30 7.48 -2.39 -0.02 1.28 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.11 3.83 7.85 -2.40 -0.02 3.81 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.03 0.92 6.94 -2.39 -0.02 0.90 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -78.37 386.98 2.20 -76.18 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.22 Total: 7.20 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.27 Total: -7.53 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.91 Total: -90.39 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.76 Total: -22.49 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -78.37 2.20 -76.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734390722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.182 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds