Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34032 * 126.77671 * 2 1 4 4 N 1.20916 * 111.56844 * 180.02562 * 3 2 1 5 5 C 1.30174 * 111.60336 * 359.74326 * 4 3 2 6 6 C 1.35451 * 126.77664 * 179.97438 * 2 1 3 7 7 C 1.50706 * 128.00522 * 359.96530 * 6 2 1 8 8 N 1.46898 * 109.46877 * 80.00115 * 7 6 2 9 9 C 1.46907 * 110.99938 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.63594 * 34.29357 * 9 8 7 11 11 C 1.55155 * 110.71871 * 271.15825 * 9 8 7 12 12 C 1.55118 * 101.48260 * 206.26298 * 11 9 8 13 13 N 1.47425 * 104.94540 * 36.77929 * 12 11 9 14 14 C 1.34776 * 125.65240 * 156.03081 * 13 12 11 15 15 O 1.21275 * 120.00246 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99822 * 359.95800 * 14 13 12 17 17 S 1.81001 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99890 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99991 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99949 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99886 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47263 * 90.00286 * 22 20 18 24 24 H 1.48499 * 109.47368 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.47307 * 330.00439 * 22 20 18 26 26 C 1.47020 * 108.69882 * 335.99214 * 13 12 11 27 27 H 1.09001 * 109.88334 * 241.63761 * 26 13 12 28 28 C 1.53002 * 109.87856 * 120.47934 * 26 13 12 29 29 H 1.09002 * 109.46970 * 269.99832 * 1 2 3 30 30 H 1.08991 * 109.47162 * 30.00293 * 1 2 3 31 31 H 1.09005 * 109.46817 * 150.00069 * 1 2 3 32 32 H 1.08007 * 126.79990 * 180.25185 * 5 4 3 33 33 H 1.09000 * 109.46628 * 199.99781 * 7 6 2 34 34 H 1.08997 * 109.47222 * 319.99630 * 7 6 2 35 35 H 1.00900 * 111.00367 * 56.04624 * 8 7 6 36 36 H 1.09005 * 111.00573 * 324.20738 * 11 9 8 37 37 H 1.09000 * 111.00330 * 88.05772 * 11 9 8 38 38 H 1.08998 * 110.21100 * 277.95635 * 12 11 9 39 39 H 1.09002 * 110.41829 * 155.70340 * 12 11 9 40 40 H 1.08997 * 109.47201 * 299.99891 * 16 14 13 41 41 H 1.09002 * 109.47397 * 59.99996 * 16 14 13 42 42 H 0.97008 * 119.99722 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47043 * 302.18957 * 28 26 13 44 44 H 1.09006 * 109.47346 * 62.19129 * 28 26 13 45 45 H 1.09003 * 109.47466 * 182.19141 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0045 6 6 2.3180 -1.0849 0.0005 7 6 1.9224 -2.5391 0.0019 8 7 1.5612 -2.9496 -1.3616 9 6 1.1697 -4.3650 -1.3990 10 1 0.6569 -4.6462 -0.4792 11 6 2.4069 -5.2706 -1.6366 12 6 1.7582 -6.5102 -2.3064 13 7 0.6868 -5.9644 -3.1594 14 6 0.1633 -6.5670 -4.2454 15 8 -0.7192 -6.0229 -4.8745 16 6 0.6751 -7.9168 -4.6781 17 16 -0.2204 -8.4562 -6.1557 18 6 0.5562 -10.0134 -6.4326 19 1 1.3370 -10.3532 -5.7683 20 6 0.1652 -10.8030 -7.5051 21 7 0.7450 -11.9665 -7.7117 22 14 -1.1848 -10.2150 -8.6545 23 1 -0.5835 -9.4367 -9.7671 24 1 -1.9106 -11.3872 -9.2061 25 1 -2.1336 -9.3536 -7.9040 26 6 0.2832 -4.6540 -2.6286 27 1 -0.7652 -4.6813 -2.3317 28 6 0.4983 -3.5739 -3.6906 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.5528 -1.0839 0.0091 33 1 2.7591 -3.1429 0.3534 34 1 1.0678 -2.6826 0.6630 35 1 2.3154 -2.7662 -2.0062 36 1 3.1182 -4.7917 -2.3096 37 1 2.8829 -5.5372 -0.6930 38 1 1.3394 -7.1720 -1.5483 39 1 2.4914 -7.0424 -2.9125 40 1 1.7393 -7.8469 -4.9030 41 1 0.5199 -8.6385 -3.8760 42 1 0.4714 -12.5184 -8.4610 43 1 1.5448 -3.5672 -3.9953 44 1 -0.1306 -3.7844 -4.5557 45 1 0.2340 -2.6004 -3.2776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734390724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = 33.113493 kcal Electronic energy + Delta-G solvation = -26616.938275 eV Core-core repulsion = 22764.217269 eV Total energy + Delta-G solvation = -3852.721006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.30577 -40.32244 -38.06717 -36.16853 -33.94633 -33.48194 -32.44915 -31.58506 -30.85829 -28.91764 -28.06279 -26.32772 -25.62465 -25.03454 -23.08560 -22.92888 -21.16837 -20.74343 -18.99251 -17.98576 -17.82731 -17.47180 -16.82506 -16.40093 -15.98081 -15.25683 -15.22085 -15.00432 -14.83168 -14.31782 -14.01360 -13.93449 -13.59747 -13.53465 -13.34686 -13.11815 -12.95883 -12.83111 -12.69151 -12.55262 -12.51981 -12.27981 -11.94231 -11.60445 -11.45417 -11.27729 -11.06130 -11.00737 -10.93471 -10.73375 -10.60471 -9.86169 -9.59052 -9.43898 -9.01213 -8.87124 -8.58889 -8.50341 -6.92799 -6.29898 -4.01585 1.07171 1.80551 2.65748 2.72135 2.95983 3.16748 3.32728 3.50091 3.57795 3.75415 3.89008 4.19175 4.20050 4.23093 4.32563 4.46304 4.59987 4.66526 4.72036 4.89451 4.96366 5.01180 5.04021 5.07153 5.09222 5.17558 5.18112 5.32025 5.37460 5.45233 5.45633 5.49427 5.49974 5.67300 5.68697 5.77829 5.85582 5.99947 6.03427 6.34990 6.43871 6.56221 6.85299 7.59283 7.87020 7.93091 8.40297 8.46184 9.16330 10.79260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.001978 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.866004 B =14153.939423 C =14563.409222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.004 4.004 3 O 0.093 5.907 4 N -0.368 5.368 5 C -0.002 4.002 6 C -0.209 4.209 7 C 0.138 3.862 8 N -0.671 5.671 9 C 0.082 3.918 10 H 0.096 0.904 11 C -0.163 4.163 12 C 0.102 3.898 13 N -0.623 5.623 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.118 4.118 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.147 3.853 27 H 0.076 0.924 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.187 0.813 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.349 0.651 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.271 0.729 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 21.422 20.697 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 O 0.029 5.971 4 N -0.072 5.072 5 C -0.182 4.182 6 C -0.214 4.214 7 C 0.009 3.991 8 N -0.302 5.302 9 C -0.029 4.029 10 H 0.114 0.886 11 C -0.203 4.203 12 C -0.022 4.022 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.388 6.388 16 C -0.269 4.269 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.043 3.957 27 H 0.094 0.906 28 C -0.211 4.211 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.204 0.796 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.274 23.304 19.625 30.551 hybrid contribution 1.467 -2.016 0.258 2.506 sum 3.741 21.288 19.883 29.368 Atomic orbital electron populations 1.20425 0.83701 1.05417 1.03937 1.24399 0.96357 0.85569 1.00525 1.84817 1.11474 1.33338 1.67508 1.73904 0.97210 1.16809 1.19266 1.24941 0.99716 0.90423 1.03085 1.20946 0.91951 0.97145 1.11351 1.20100 0.99987 0.87864 0.91113 1.60496 1.44866 1.18002 1.06870 1.22623 0.95205 0.86539 0.98523 0.88629 1.23540 0.98103 0.97285 1.01350 1.22244 0.89946 0.95903 0.94076 1.48554 1.39128 1.19922 1.28451 1.19925 0.81626 0.86399 0.78347 1.90691 1.29823 1.65488 1.52801 1.23264 1.04315 0.95631 1.03648 1.84789 1.51422 1.24222 1.31091 1.22306 1.24952 1.02212 1.17387 0.89436 1.24715 0.96113 0.93935 0.96575 1.69939 1.41303 1.10539 1.29896 0.86731 0.83192 0.79625 0.82286 1.19208 1.19942 1.15900 1.21368 0.98108 0.83223 0.92969 0.90608 1.21951 1.01590 0.98464 0.99056 0.89590 0.89877 0.87897 0.79554 0.93523 0.89504 0.83112 0.90372 0.89884 0.91145 0.90182 0.88753 0.88650 0.91944 0.93459 0.91428 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.30 36.01 0.37 0.06 16 2 C 0.00 -0.03 7.49 -35.30 -0.26 -0.29 16 3 O 0.09 0.84 11.20 17.20 0.19 1.03 16 4 N -0.37 -3.63 12.07 30.35 0.37 -3.26 16 5 C 0.00 -0.02 12.16 -17.06 -0.21 -0.23 16 6 C -0.21 -1.35 5.84 -104.42 -0.61 -1.96 16 7 C 0.14 0.67 5.88 -4.97 -0.03 0.64 16 8 N -0.67 -3.92 4.80 -106.05 -0.51 -4.43 16 9 C 0.08 0.55 3.11 -65.88 -0.21 0.34 16 10 H 0.10 0.56 7.86 -51.93 -0.41 0.15 16 11 C -0.16 -1.05 6.68 -24.47 -0.16 -1.21 16 12 C 0.10 0.95 6.69 -2.42 -0.02 0.94 16 13 N -0.62 -8.09 3.08 -162.89 -0.50 -8.60 16 14 C 0.55 9.84 7.65 -10.98 -0.08 9.76 16 15 O -0.51 -11.03 14.77 5.56 0.08 -10.95 16 16 C -0.12 -2.30 5.16 36.01 0.19 -2.11 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 22 Si 0.86 21.76 27.74 -169.99 -4.71 17.05 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C 0.15 1.57 3.48 -66.96 -0.23 1.34 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 C -0.15 -1.73 8.23 37.16 0.31 -1.43 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.41 8.06 -51.93 -0.42 0.00 16 32 H 0.19 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.35 2.21 7.65 -39.29 -0.30 1.91 16 36 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16 40 H 0.09 1.72 7.85 -51.92 -0.41 1.32 16 41 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.05 0.53 7.93 -51.93 -0.41 0.11 16 44 H 0.07 1.00 6.77 -51.93 -0.35 0.65 16 45 H 0.08 0.74 7.40 -51.93 -0.38 0.36 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -34.63 383.60 -8.11 -42.75 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.85 Total: -1.98 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.74 Total: -6.11 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.13 Total: -41.98 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.27 Total: -9.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.63 -8.11 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734390724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.859 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds