Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35451 * 126.78356 * 2 1 4 4 C 1.41376 * 103.99274 * 179.97438 * 3 2 1 5 5 C 1.50691 * 126.80594 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47415 * 94.99922 * 5 4 3 7 7 C 1.47445 * 110.99628 * 53.77866 * 6 5 4 8 8 C 1.54324 * 107.23109 * 123.26337 * 7 6 5 9 9 C 1.55147 * 103.01821 * 22.28023 * 8 7 6 10 10 C 1.47841 * 111.00133 * 174.62386 * 6 5 4 11 11 H 1.08998 * 110.37806 * 332.57428 * 10 6 5 12 12 C 1.52998 * 110.37317 * 94.80787 * 10 6 5 13 13 N 1.46499 * 109.47406 * 298.70782 * 12 10 6 14 14 C 1.34777 * 120.00074 * 173.66525 * 13 12 10 15 15 O 1.21277 * 120.00079 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99520 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.46733 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00119 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99690 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00092 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00003 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99673 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47254 * 90.00362 * 22 20 18 24 24 H 1.48503 * 109.46853 * 210.00178 * 22 20 18 25 25 H 1.48499 * 109.47085 * 330.00045 * 22 20 18 26 26 N 1.30180 * 106.39115 * 0.25883 * 4 3 2 27 27 O 1.20918 * 111.60407 * 359.53954 * 26 4 3 28 28 H 1.08997 * 109.47337 * 90.00189 * 1 2 3 29 29 H 1.08999 * 109.47423 * 210.00497 * 1 2 3 30 30 H 1.09006 * 109.47114 * 329.99867 * 1 2 3 31 31 H 1.08003 * 128.00132 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47076 * 335.00123 * 5 4 3 33 33 H 1.09006 * 109.47591 * 215.00318 * 5 4 3 34 34 H 1.09001 * 109.88889 * 242.66325 * 7 6 5 35 35 H 1.08995 * 109.89378 * 3.69307 * 7 6 5 36 36 H 1.08997 * 110.70911 * 140.66285 * 8 7 6 37 37 H 1.08995 * 110.70269 * 263.90148 * 8 7 6 38 38 H 1.09004 * 110.98695 * 206.25721 * 9 8 7 39 39 H 1.08996 * 110.98729 * 82.44120 * 9 8 7 40 40 H 1.09004 * 109.47230 * 178.70517 * 12 10 6 41 41 H 1.09001 * 109.47288 * 58.70989 * 12 10 6 42 42 H 0.97004 * 119.99555 * 353.66765 * 13 12 10 43 43 H 1.08997 * 109.47169 * 60.00590 * 16 14 13 44 44 H 1.08994 * 109.47400 * 299.99749 * 16 14 13 45 45 H 0.97006 * 120.00250 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.2998 0.0003 6 7 5.4043 1.4445 1.3800 7 6 5.4884 0.1340 2.0505 8 6 6.9428 -0.0379 2.5372 9 6 7.4596 1.4228 2.6171 10 6 6.7410 2.0753 1.4098 11 1 7.2804 1.8654 0.4862 12 6 6.6127 3.5855 1.6191 13 7 5.8616 4.1708 0.5058 14 6 5.5133 5.4724 0.5383 15 8 5.8213 6.1590 1.4894 16 6 4.7400 6.0742 -0.6067 17 16 4.4261 7.8244 -0.2687 18 6 3.5358 8.2624 -1.7248 19 1 3.3439 7.5190 -2.4845 20 6 3.0800 9.5623 -1.8950 21 7 3.3134 10.4680 -0.9689 22 14 2.1368 10.0266 -3.4390 23 1 0.6847 9.8111 -3.2156 24 1 2.3818 11.4563 -3.7576 25 1 2.5941 9.1817 -4.5714 26 7 3.4763 -0.7565 -0.0047 27 8 2.3094 -1.0736 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 2.0345 2.1270 0.0004 32 1 4.7631 2.2867 -0.4347 33 1 5.6606 0.7573 -0.5887 34 1 4.8073 0.1082 2.9011 35 1 5.2338 -0.6592 1.3476 36 1 6.9673 -0.5096 3.5195 37 1 7.5245 -0.6137 1.8174 38 1 8.5420 1.4612 2.4946 39 1 7.1570 1.8933 3.5525 40 1 7.6062 4.0321 1.6617 41 1 6.0869 3.7794 2.5540 42 1 5.6148 3.6215 -0.2546 43 1 3.7908 5.5504 -0.7192 44 1 5.3186 5.9793 -1.5255 45 1 2.9952 11.3767 -1.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753100430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = 33.228195 kcal Electronic energy + Delta-G solvation = -26876.533031 eV Core-core repulsion = 23023.816999 eV Total energy + Delta-G solvation = -3852.716032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.16377 -40.01453 -38.68092 -35.10551 -34.38533 -33.71397 -32.42192 -31.74745 -30.71730 -28.72809 -28.09782 -26.76003 -25.52748 -24.71020 -23.31665 -21.75330 -20.66953 -20.19906 -19.96281 -17.95362 -17.86091 -17.38192 -16.82897 -16.36172 -15.92043 -15.41225 -15.09824 -15.00200 -14.79898 -14.21817 -14.08437 -13.93635 -13.59257 -13.58704 -13.52129 -13.19268 -13.08918 -12.70226 -12.61473 -12.57835 -11.94580 -11.89677 -11.65610 -11.54047 -11.41899 -11.23161 -11.06031 -11.01549 -10.98158 -10.75322 -10.41454 -9.80581 -9.53251 -9.34437 -9.06292 -8.80191 -8.68905 -8.21563 -6.48381 -6.20859 -3.91065 1.21260 1.93516 2.85274 3.05688 3.16720 3.22344 3.28237 3.32524 3.56055 3.70856 3.84866 4.11487 4.21170 4.36290 4.37008 4.61725 4.75365 4.82297 4.86651 4.88549 4.98704 5.06313 5.13057 5.13105 5.14221 5.24285 5.34297 5.40789 5.47194 5.47504 5.51789 5.57874 5.65621 5.70474 5.70898 5.83330 5.90131 5.91109 6.00470 6.14795 6.53010 6.64743 6.70848 7.60028 7.74316 8.00877 8.35798 8.67437 9.24383 10.86530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.002910 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.024711 B = 9618.349536 C =11953.660139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.214 4.214 4 C 0.027 3.973 5 C 0.126 3.874 6 N -0.514 5.514 7 C 0.035 3.965 8 C -0.140 4.140 9 C -0.119 4.119 10 C 0.060 3.940 11 H 0.064 0.936 12 C 0.138 3.862 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.365 5.365 27 O 0.096 5.904 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.174 0.826 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.391 0.609 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -25.780 3.118 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.236 4.236 4 C -0.132 4.132 5 C -0.003 4.003 6 N -0.239 5.239 7 C -0.093 4.093 8 C -0.178 4.178 9 C -0.158 4.158 10 C -0.049 4.049 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.070 5.070 27 O 0.030 5.970 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.227 0.773 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.183 -25.151 5.008 25.738 hybrid contribution -0.931 -0.472 -2.941 3.121 sum 1.253 -25.624 2.066 25.738 Atomic orbital electron populations 1.20352 0.83901 1.04757 1.04182 1.24502 0.96400 0.85973 1.02875 1.22485 0.91067 1.01360 1.08707 1.23237 0.97124 0.89846 1.02949 1.20719 0.90020 0.98732 0.90804 1.63641 1.25037 1.21055 1.14205 1.22952 0.96682 0.90270 0.99395 1.22764 0.96062 0.96983 1.02014 1.22680 0.99994 0.94870 0.98221 1.22910 0.88445 0.94497 0.99000 0.91812 1.21274 0.96460 0.89749 0.91192 1.46128 1.59293 1.10843 1.22894 1.20266 0.78961 0.81097 0.87945 1.90698 1.53540 1.60196 1.34755 1.23530 1.01834 1.05998 0.99054 1.85410 1.72262 0.96765 1.28787 1.22870 1.41065 0.98509 1.05929 0.90986 1.24984 0.95890 0.95317 0.97373 1.70017 1.43758 1.03296 1.33193 0.86182 0.79765 0.77827 0.81805 1.20278 1.20765 1.19716 1.73798 0.97216 1.16253 1.19749 1.84785 1.11261 1.33321 1.67654 0.89358 0.89933 0.88773 0.80835 0.88418 0.92685 0.90646 0.91300 0.90474 0.91445 0.90209 0.89837 0.91397 0.90455 0.77272 0.89377 0.89414 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.00 0.38 0.00 16 2 C -0.03 -0.30 7.49 -35.31 -0.26 -0.57 16 3 C -0.21 -2.16 11.06 -39.38 -0.44 -2.59 16 4 C 0.03 0.29 5.89 -82.10 -0.48 -0.19 16 5 C 0.13 1.23 5.16 -4.98 -0.03 1.21 16 6 N -0.51 -5.19 4.86 -224.82 -1.09 -6.28 16 7 C 0.03 0.33 6.23 -2.83 -0.02 0.31 16 8 C -0.14 -1.05 6.94 -24.90 -0.17 -1.22 16 9 C -0.12 -0.91 6.50 -24.59 -0.16 -1.07 16 10 C 0.06 0.55 2.69 -66.19 -0.18 0.37 16 11 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 12 C 0.14 1.65 5.39 -4.04 -0.02 1.63 16 13 N -0.74 -10.03 5.35 -60.29 -0.32 -10.35 16 14 C 0.53 10.00 7.85 -10.98 -0.09 9.91 16 15 O -0.52 -11.87 15.84 5.56 0.09 -11.78 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 N -0.37 -4.24 10.53 33.42 0.35 -3.89 16 27 O 0.10 1.03 11.20 17.17 0.19 1.22 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.10 0.91 5.41 -51.93 -0.28 0.63 16 33 H 0.06 0.51 7.96 -51.93 -0.41 0.09 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.72 5.67 -51.93 -0.29 0.42 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.07 8.12 -51.93 -0.42 0.64 16 42 H 0.39 4.37 5.48 -40.82 -0.22 4.14 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -35.30 383.21 -9.21 -44.50 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.65 Total: 1.72 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.05 Total: -7.98 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.33 Total: -45.90 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.28 Total: -10.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.30 -9.21 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753100430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.733 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds