Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 126.77487 * 2 1 4 4 C 1.41381 * 103.98528 * 180.13891 * 3 2 1 5 5 C 1.50700 * 126.80464 * 179.88288 * 4 3 2 6 6 N 1.46907 * 109.46857 * 94.70988 * 5 4 3 7 7 C 1.47439 * 111.00232 * 283.90555 * 6 5 4 8 8 C 1.54314 * 107.37122 * 236.65925 * 7 6 5 9 9 C 1.55402 * 102.90020 * 337.89594 * 8 7 6 10 10 C 1.47837 * 110.99957 * 163.06112 * 6 5 4 11 11 H 1.09005 * 110.37576 * 27.53604 * 10 6 5 12 12 C 1.53006 * 110.37458 * 265.19648 * 10 6 5 13 13 N 1.46492 * 109.47137 * 61.71486 * 12 10 6 14 14 C 1.34783 * 119.99980 * 186.60861 * 13 12 10 15 15 O 1.21282 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99958 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47016 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00067 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99906 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00000 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00284 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99951 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46918 * 60.00511 * 22 20 18 24 24 H 1.48494 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47158 * 300.00354 * 22 20 18 26 26 N 1.30181 * 106.39269 * 359.62514 * 4 3 2 27 27 O 1.20918 * 111.60784 * 0.24171 * 26 4 3 28 28 H 1.09004 * 109.47053 * 180.30632 * 1 2 3 29 29 H 1.08999 * 109.47205 * 300.29595 * 1 2 3 30 30 H 1.08996 * 109.47137 * 60.30275 * 1 2 3 31 31 H 1.07998 * 128.00735 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46768 * 334.71476 * 5 4 3 33 33 H 1.08996 * 109.47304 * 214.70652 * 5 4 3 34 34 H 1.09004 * 109.89091 * 356.14984 * 7 6 5 35 35 H 1.09001 * 109.88782 * 117.16865 * 7 6 5 36 36 H 1.09008 * 110.70267 * 96.17905 * 8 7 6 37 37 H 1.09006 * 110.70799 * 219.41275 * 8 7 6 38 38 H 1.09000 * 110.86665 * 277.39036 * 9 8 7 39 39 H 1.08996 * 111.02301 * 153.63244 * 9 8 7 40 40 H 1.09005 * 109.46931 * 181.71653 * 12 10 6 41 41 H 1.08998 * 109.46742 * 301.71268 * 12 10 6 42 42 H 0.97002 * 120.00438 * 6.60689 * 13 12 10 43 43 H 1.09000 * 109.46982 * 299.99601 * 16 14 13 44 44 H 1.08999 * 109.47474 * 59.99630 * 16 14 13 45 45 H 0.96993 * 120.00152 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0033 5 6 4.9210 1.3001 -0.0072 6 7 5.4047 1.4504 1.3718 7 6 4.6409 2.4873 2.0896 8 6 5.6531 3.5336 2.6015 9 6 6.9882 2.7389 2.6316 10 6 6.8359 1.8199 1.3940 11 1 7.1026 2.3598 0.4853 12 6 7.7063 0.5710 1.5477 13 7 7.4949 -0.3157 0.4009 14 6 8.0566 -1.5408 0.3837 15 8 8.7375 -1.9088 1.3174 16 6 7.8396 -2.4527 -0.7963 17 16 8.7165 -4.0123 -0.5227 18 6 8.3019 -4.8614 -2.0099 19 1 7.6762 -4.3825 -2.7486 20 6 8.7802 -6.1452 -2.2325 21 7 9.5432 -6.7286 -1.3325 22 14 8.3401 -7.0456 -3.8090 23 1 8.8343 -6.2713 -4.9758 24 1 8.9705 -8.3901 -3.8036 25 1 6.8651 -7.1914 -3.9004 26 7 3.4763 -0.7564 0.0032 27 8 2.3095 -1.0736 0.0052 28 1 -0.3633 -1.0277 0.0055 29 1 -0.3633 0.5184 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0344 2.1271 0.0004 32 1 4.7628 2.2851 -0.4461 33 1 5.6604 0.7551 -0.5941 34 1 3.9297 2.9599 1.4119 35 1 4.1107 2.0415 2.9311 36 1 5.7210 4.3742 1.9108 37 1 5.3823 3.8752 3.6006 38 1 7.0700 2.1518 3.5463 39 1 7.8429 3.4060 2.5199 40 1 8.7556 0.8627 1.5929 41 1 7.4343 0.0494 2.4653 42 1 6.9506 -0.0213 -0.3460 43 1 6.7739 -2.6501 -0.9117 44 1 8.2206 -1.9756 -1.6992 45 1 9.8771 -7.6258 -1.4879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753100431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = 33.574534 kcal Electronic energy + Delta-G solvation = -27007.085325 eV Core-core repulsion = 23154.384311 eV Total energy + Delta-G solvation = -3852.701014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.04758 -39.99505 -38.60134 -35.01699 -34.33302 -33.66470 -32.34828 -31.75678 -30.68776 -28.66966 -28.03220 -26.78886 -25.45493 -24.63280 -23.17803 -21.94314 -20.72036 -20.15929 -19.81351 -17.80462 -17.76000 -17.39347 -16.77742 -16.31683 -15.85811 -15.42631 -15.10882 -14.94615 -14.73089 -14.23857 -14.06206 -13.89068 -13.71641 -13.61892 -13.36828 -13.21639 -13.05807 -12.69969 -12.57466 -12.51792 -11.93364 -11.79236 -11.61805 -11.53868 -11.41447 -11.16466 -10.97857 -10.97504 -10.95241 -10.69473 -10.33407 -9.73956 -9.49096 -9.25186 -8.98337 -8.73249 -8.70287 -8.13735 -6.39728 -6.13409 -3.82766 1.33069 2.00131 2.95356 3.13155 3.26548 3.29301 3.32782 3.37763 3.55870 3.79608 3.90960 4.18829 4.28531 4.31284 4.34332 4.57096 4.73442 4.80790 4.82943 4.84854 4.96064 5.02287 5.08809 5.12339 5.19956 5.21354 5.28798 5.38172 5.41130 5.45994 5.48422 5.58713 5.61792 5.69965 5.76958 5.82618 5.86474 6.01422 6.05147 6.27904 6.54700 6.63845 6.79586 7.67431 7.82667 8.20067 8.43471 8.76641 9.31635 10.94090 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.003091 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.429976 B = 9057.789208 C =11423.018088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.234 4.234 4 C 0.023 3.977 5 C 0.128 3.872 6 N -0.516 5.516 7 C 0.044 3.956 8 C -0.141 4.141 9 C -0.120 4.120 10 C 0.061 3.939 11 H 0.064 0.936 12 C 0.137 3.863 13 N -0.734 5.734 14 C 0.534 3.466 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.534 4.534 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.335 5.335 27 O 0.107 5.893 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.166 0.834 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.390 0.610 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 25.635 4.170 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.255 4.255 4 C -0.137 4.137 5 C -0.001 4.001 6 N -0.242 5.242 7 C -0.084 4.084 8 C -0.179 4.179 9 C -0.158 4.158 10 C -0.047 4.047 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.391 5.391 14 C 0.320 3.680 15 O -0.394 6.394 16 C -0.303 4.303 17 S 0.168 5.832 18 C -0.682 4.682 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.036 5.036 27 O 0.037 5.963 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.183 0.817 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.227 0.773 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.276 23.338 6.024 28.536 hybrid contribution -1.691 1.550 -2.895 3.694 sum -16.967 24.888 3.129 30.283 Atomic orbital electron populations 1.20322 0.84237 1.04788 1.03828 1.24498 0.96410 0.86365 1.02715 1.22301 0.91465 1.00662 1.11121 1.23224 0.96373 0.90159 1.03953 1.20575 0.91298 0.97558 0.90623 1.63386 1.02352 1.45216 1.13231 1.22866 0.95850 0.90898 0.98750 1.22829 0.95209 0.97827 1.02050 1.22712 0.97634 0.97494 0.97977 1.22863 0.87784 0.95241 0.98823 0.91827 1.21261 0.97765 0.89081 0.90616 1.46116 1.54455 1.16381 1.22098 1.20243 0.78550 0.81058 0.88130 1.90686 1.37967 1.73948 1.36836 1.23521 1.05882 1.02506 0.98431 1.85337 1.64450 1.05363 1.28067 1.22840 1.37143 1.03112 1.05136 0.91065 1.24976 0.94661 0.96364 0.97556 1.70009 1.31978 1.14464 1.33957 0.86241 0.78783 0.78488 0.82093 1.19993 1.20835 1.19935 1.73984 0.96400 1.16134 1.17094 1.84920 1.11385 1.33108 1.66869 0.89795 0.89342 0.89314 0.81670 0.91906 0.89362 0.92559 0.90413 0.91378 0.90395 0.89864 0.90166 0.91457 0.90564 0.77285 0.89172 0.89586 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.00 0.38 0.03 16 2 C -0.04 -0.33 7.49 -35.30 -0.26 -0.59 16 3 C -0.23 -2.04 10.82 -39.38 -0.43 -2.47 16 4 C 0.02 0.26 6.51 -82.10 -0.53 -0.27 16 5 C 0.13 1.25 5.03 -4.97 -0.02 1.22 16 6 N -0.52 -5.14 4.70 -224.82 -1.06 -6.20 16 7 C 0.04 0.34 6.52 -2.84 -0.02 0.32 16 8 C -0.14 -0.84 6.97 -24.77 -0.17 -1.01 16 9 C -0.12 -0.86 6.50 -24.45 -0.16 -1.02 16 10 C 0.06 0.56 2.66 -66.19 -0.18 0.38 16 11 H 0.06 0.51 7.81 -51.93 -0.41 0.11 16 12 C 0.14 1.78 5.39 -4.04 -0.02 1.75 16 13 N -0.73 -11.27 5.37 -60.29 -0.32 -11.59 16 14 C 0.53 11.04 7.85 -10.98 -0.09 10.95 16 15 O -0.52 -12.71 15.84 5.56 0.09 -12.63 16 16 C -0.15 -3.40 6.16 36.01 0.22 -3.18 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.93 9.50 30.94 0.29 -15.63 16 19 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 20 C 0.07 2.18 5.49 -17.43 -0.10 2.08 16 21 N -0.87 -27.05 13.22 55.49 0.73 -26.31 16 22 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 N -0.34 -4.92 12.07 33.43 0.40 -4.52 16 27 O 0.11 1.39 11.20 17.17 0.19 1.58 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.06 0.46 7.76 -51.93 -0.40 0.05 16 33 H 0.09 0.93 4.97 -51.93 -0.26 0.67 16 34 H 0.06 0.36 7.13 -51.93 -0.37 -0.01 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 42 H 0.39 5.16 5.38 -40.82 -0.22 4.94 16 43 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -37.86 385.99 -9.16 -47.02 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.69 Total: 1.02 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.09 Total: -7.43 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.24 Total: -48.63 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.28 Total: -11.04 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.86 -9.16 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753100431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.593 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds