Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 126.77487 * 2 1 4 4 C 1.41381 * 103.98528 * 180.13891 * 3 2 1 5 5 C 1.50700 * 126.80464 * 179.88288 * 4 3 2 6 6 N 1.46907 * 109.46857 * 94.70988 * 5 4 3 7 7 C 1.47439 * 111.00232 * 283.90555 * 6 5 4 8 8 C 1.54314 * 107.37122 * 236.65925 * 7 6 5 9 9 C 1.55402 * 102.90020 * 337.89594 * 8 7 6 10 10 C 1.47837 * 110.99957 * 163.06112 * 6 5 4 11 11 H 1.09005 * 110.37576 * 27.53604 * 10 6 5 12 12 C 1.53006 * 110.37458 * 265.19648 * 10 6 5 13 13 N 1.46492 * 109.47137 * 61.71486 * 12 10 6 14 14 C 1.34783 * 119.99980 * 186.60861 * 13 12 10 15 15 O 1.21282 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99958 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47016 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00067 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99906 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00000 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00284 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99951 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46918 * 60.00511 * 22 20 18 24 24 H 1.48494 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47158 * 300.00354 * 22 20 18 26 26 N 1.30181 * 106.39269 * 359.62514 * 4 3 2 27 27 O 1.20918 * 111.60784 * 0.24171 * 26 4 3 28 28 H 1.09004 * 109.47053 * 180.30632 * 1 2 3 29 29 H 1.08999 * 109.47205 * 300.29595 * 1 2 3 30 30 H 1.08996 * 109.47137 * 60.30275 * 1 2 3 31 31 H 1.07998 * 128.00735 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46768 * 334.71476 * 5 4 3 33 33 H 1.08996 * 109.47304 * 214.70652 * 5 4 3 34 34 H 1.09004 * 109.89091 * 356.14984 * 7 6 5 35 35 H 1.09001 * 109.88782 * 117.16865 * 7 6 5 36 36 H 1.09008 * 110.70267 * 96.17905 * 8 7 6 37 37 H 1.09006 * 110.70799 * 219.41275 * 8 7 6 38 38 H 1.09000 * 110.86665 * 277.39036 * 9 8 7 39 39 H 1.08996 * 111.02301 * 153.63244 * 9 8 7 40 40 H 1.09005 * 109.46931 * 181.71653 * 12 10 6 41 41 H 1.08998 * 109.46742 * 301.71268 * 12 10 6 42 42 H 0.97002 * 120.00438 * 6.60689 * 13 12 10 43 43 H 1.09000 * 109.46982 * 299.99601 * 16 14 13 44 44 H 1.08999 * 109.47474 * 59.99630 * 16 14 13 45 45 H 0.96993 * 120.00152 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0033 5 6 4.9210 1.3001 -0.0072 6 7 5.4047 1.4504 1.3718 7 6 4.6409 2.4873 2.0896 8 6 5.6531 3.5336 2.6015 9 6 6.9882 2.7389 2.6316 10 6 6.8359 1.8199 1.3940 11 1 7.1026 2.3598 0.4853 12 6 7.7063 0.5710 1.5477 13 7 7.4949 -0.3157 0.4009 14 6 8.0566 -1.5408 0.3837 15 8 8.7375 -1.9088 1.3174 16 6 7.8396 -2.4527 -0.7963 17 16 8.7165 -4.0123 -0.5227 18 6 8.3019 -4.8614 -2.0099 19 1 7.6762 -4.3825 -2.7486 20 6 8.7802 -6.1452 -2.2325 21 7 9.5432 -6.7286 -1.3325 22 14 8.3401 -7.0456 -3.8090 23 1 8.8343 -6.2713 -4.9758 24 1 8.9705 -8.3901 -3.8036 25 1 6.8651 -7.1914 -3.9004 26 7 3.4763 -0.7564 0.0032 27 8 2.3095 -1.0736 0.0052 28 1 -0.3633 -1.0277 0.0055 29 1 -0.3633 0.5184 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0344 2.1271 0.0004 32 1 4.7628 2.2851 -0.4461 33 1 5.6604 0.7551 -0.5941 34 1 3.9297 2.9599 1.4119 35 1 4.1107 2.0415 2.9311 36 1 5.7210 4.3742 1.9108 37 1 5.3823 3.8752 3.6006 38 1 7.0700 2.1518 3.5463 39 1 7.8429 3.4060 2.5199 40 1 8.7556 0.8627 1.5929 41 1 7.4343 0.0494 2.4653 42 1 6.9506 -0.0213 -0.3460 43 1 6.7739 -2.6501 -0.9117 44 1 8.2206 -1.9756 -1.6992 45 1 9.8771 -7.6258 -1.4879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753100431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = 5.806018 kcal Electronic energy + Delta-G solvation = -27008.289458 eV Core-core repulsion = 23154.384311 eV Total energy + Delta-G solvation = -3853.905147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.86691 -41.01651 -39.92508 -35.88250 -35.57590 -34.61089 -34.28882 -32.46434 -31.96897 -30.02254 -28.60369 -27.72086 -27.47162 -25.68432 -23.95748 -22.69428 -21.62266 -21.38277 -20.61484 -19.81542 -18.63292 -18.18721 -17.89349 -17.55712 -17.15771 -16.90346 -16.51387 -16.26636 -15.87278 -15.75545 -15.00461 -14.85187 -14.67417 -14.51024 -14.39953 -13.99402 -13.96920 -13.91464 -13.68233 -13.22375 -13.20708 -13.16886 -12.88661 -12.68310 -12.58954 -12.50294 -12.25595 -12.05525 -11.86705 -11.75441 -11.54600 -11.15391 -11.13978 -10.95827 -10.33286 -10.20564 -10.12056 -9.39613 -8.69870 -8.36564 -6.15452 0.60011 1.23063 1.26402 1.41956 1.43361 1.54149 1.58509 2.23434 2.26636 2.32075 2.86130 2.96911 3.20206 3.27553 3.50421 3.68304 3.70025 3.84254 4.03511 4.13875 4.16676 4.18180 4.21812 4.25293 4.30067 4.42619 4.50742 4.56960 4.61361 4.62763 4.74852 4.75257 4.83952 4.91053 5.00521 5.03909 5.05600 5.14979 5.29704 5.34799 5.38305 5.42325 5.92446 5.97254 6.17173 6.40953 7.03753 7.19006 7.42171 8.72793 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.003091 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.429976 B = 9057.789208 C =11423.018088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.037 4.037 3 C -0.231 4.231 4 C 0.018 3.982 5 C 0.128 3.872 6 N -0.542 5.542 7 C 0.044 3.956 8 C -0.130 4.130 9 C -0.118 4.118 10 C 0.069 3.931 11 H 0.086 0.914 12 C 0.135 3.865 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.128 4.128 17 S -0.144 6.144 18 C -0.551 4.551 19 H 0.079 0.921 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 1.000 3.000 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.264 1.264 26 N -0.393 5.393 27 O 0.075 5.925 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.404 0.596 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 28.707 2.570 34.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.253 4.253 4 C -0.142 4.142 5 C 0.000 4.000 6 N -0.268 5.268 7 C -0.083 4.083 8 C -0.168 4.168 9 C -0.156 4.156 10 C -0.039 4.039 11 H 0.103 0.897 12 C 0.011 3.989 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.084 5.916 18 C -0.698 4.698 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.189 1.189 26 N -0.100 5.100 27 O 0.010 5.990 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.217 0.783 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.243 0.757 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.351 26.460 4.418 31.949 hybrid contribution -1.156 0.714 -2.326 2.693 sum -18.507 27.175 2.093 32.945 Atomic orbital electron populations 1.20553 0.81199 1.05478 1.05755 1.25372 0.98066 0.85590 1.01027 1.22687 0.89966 1.02096 1.10526 1.23730 0.98186 0.89662 1.02593 1.20663 0.90209 0.98620 0.90549 1.63231 1.02894 1.47002 1.13702 1.22869 0.96302 0.90710 0.98395 1.22798 0.93410 0.97510 1.03059 1.22726 0.99349 0.97319 0.96231 1.22801 0.86849 0.93369 1.00872 0.89651 1.21472 0.99255 0.89891 0.88317 1.45946 1.52635 1.14699 1.23156 1.20006 0.78687 0.82364 0.87025 1.90668 1.40374 1.75200 1.38124 1.23340 1.04999 0.99419 1.00210 1.85476 1.66468 1.10149 1.29556 1.23161 1.37669 1.03885 1.05109 0.90295 1.26148 0.94092 0.97134 1.01671 1.70171 1.33068 1.15014 1.36415 0.84993 0.78880 0.77086 0.76960 1.18450 1.19959 1.18875 1.73975 0.97558 1.18220 1.20237 1.84845 1.11501 1.34821 1.67848 0.89801 0.87325 0.87150 0.78293 0.88694 0.90741 0.90768 0.91996 0.89477 0.89463 0.91264 0.88297 0.90883 0.93187 0.75677 0.88659 0.87407 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 71.23 0.74 0.23 16 2 C -0.04 -0.63 7.49 25.04 0.19 -0.44 16 3 C -0.23 -3.53 10.82 22.40 0.24 -3.29 16 4 C 0.02 0.39 6.51 43.58 0.28 0.67 16 5 C 0.13 2.25 5.03 85.56 0.43 2.68 16 6 N -0.54 -9.92 4.70 -865.19 -4.06 -13.98 16 7 C 0.04 0.56 6.52 86.65 0.57 1.13 16 8 C -0.13 -1.11 6.97 31.87 0.22 -0.89 16 9 C -0.12 -1.41 6.50 32.07 0.21 -1.21 16 10 C 0.07 1.14 2.66 45.39 0.12 1.26 16 11 H 0.09 1.08 7.81 -2.38 -0.02 1.06 16 12 C 0.13 3.45 5.39 86.38 0.47 3.92 16 13 N -0.71 -21.73 5.37 -463.05 -2.49 -24.22 16 14 C 0.53 22.63 7.85 87.66 0.69 23.32 16 15 O -0.57 -28.87 15.84 -3.04 -0.05 -28.92 16 16 C -0.13 -5.83 6.16 71.24 0.44 -5.39 16 17 S -0.14 -8.57 20.57 -56.49 -1.16 -9.74 16 18 C -0.55 -33.42 9.50 67.95 0.65 -32.77 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 20 C 0.01 0.86 5.49 84.86 0.47 1.32 16 21 N -0.91 -58.02 13.22 21.65 0.29 -57.73 16 22 Si 1.00 45.52 29.55 68.60 2.03 47.54 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 N -0.39 -11.86 12.07 -49.54 -0.60 -12.46 16 27 O 0.07 2.00 11.20 71.61 0.80 2.80 16 28 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.10 1.02 7.76 -2.39 -0.02 1.00 16 33 H 0.07 1.46 4.97 -2.39 -0.01 1.45 16 34 H 0.07 0.68 7.13 -2.38 -0.02 0.66 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 1.03 8.06 -2.39 -0.02 1.02 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 42 H 0.40 10.38 5.38 -92.71 -0.50 9.88 16 43 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 44 H 0.11 4.38 8.14 -2.40 -0.02 4.36 16 45 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -87.47 385.99 0.97 -86.50 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.51 Total: 19.68 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.71 Total: -9.47 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -6.86 Total: -108.39 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: 0.75 Total: -26.12 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -87.47 0.97 -86.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753100431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.306 kcal (2) G-P(sol) polarization free energy of solvation -87.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds