Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33637 * 122.75169 * 2 1 4 4 S 1.76196 * 107.92429 * 180.02562 * 3 2 1 5 5 C 1.70974 * 90.28333 * 0.02562 * 4 3 2 6 6 C 1.50702 * 124.91430 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.67873 * 176.98212 * 6 5 4 8 8 C 1.53290 * 109.68276 * 297.49785 * 6 5 4 9 9 O 1.42963 * 109.22501 * 172.03088 * 8 6 5 10 10 C 1.42966 * 114.16311 * 297.41984 * 9 8 6 11 11 C 1.53293 * 109.22248 * 62.57668 * 10 9 8 12 12 N 1.47149 * 109.68246 * 56.42666 * 6 5 4 13 13 C 1.34781 * 120.98348 * 9.76211 * 12 6 5 14 14 O 1.21585 * 119.99588 * 4.55345 * 13 12 6 15 15 N 1.34771 * 119.99800 * 184.55209 * 13 12 6 16 16 C 1.46503 * 119.99621 * 184.97225 * 15 13 12 17 17 C 1.53005 * 109.47122 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47130 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46824 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00535 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99983 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99526 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46872 * 60.00063 * 23 21 19 25 25 H 1.48494 * 109.46967 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47061 * 300.00272 * 23 21 19 27 27 N 1.29032 * 110.16641 * 0.24146 * 5 4 3 28 28 H 1.08994 * 109.47369 * 89.97102 * 1 2 3 29 29 H 1.08999 * 109.47277 * 209.97940 * 1 2 3 30 30 H 1.09005 * 109.47322 * 329.97386 * 1 2 3 31 31 H 1.08003 * 126.03869 * 0.04413 * 3 2 1 32 32 H 1.09002 * 109.51587 * 52.10320 * 8 6 5 33 33 H 1.09005 * 109.55421 * 291.97684 * 8 6 5 34 34 H 1.08993 * 109.51280 * 182.50521 * 10 9 8 35 35 H 1.08999 * 109.50889 * 302.65399 * 10 9 8 36 36 H 1.09002 * 109.68324 * 67.42381 * 11 10 9 37 37 H 1.09004 * 109.68400 * 187.97412 * 11 10 9 38 38 H 0.96995 * 120.00421 * 4.97772 * 15 13 12 39 39 H 1.08999 * 109.47579 * 300.00572 * 16 15 13 40 40 H 1.09007 * 109.46922 * 60.00814 * 16 15 13 41 41 H 1.08999 * 109.47246 * 300.00635 * 17 16 15 42 42 H 1.08996 * 109.47080 * 60.00216 * 17 16 15 43 43 H 1.09001 * 109.46714 * 299.99950 * 18 17 16 44 44 H 1.08998 * 109.47038 * 60.00326 * 18 17 16 45 45 H 0.97004 * 119.99466 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1272 -0.0033 7 1 3.9432 -3.0724 0.0503 8 6 5.3246 -2.0853 -1.2842 9 8 6.3696 -3.0567 -1.1930 10 6 7.2954 -2.8221 -0.1292 11 6 6.5552 -2.9016 1.2108 12 7 5.3887 -2.0067 1.1505 13 6 5.1560 -1.1036 2.1236 14 8 4.1435 -0.4308 2.0990 15 7 6.0455 -0.9465 3.1238 16 6 5.7428 -0.0450 4.2383 17 6 6.9091 -0.0489 5.2286 18 6 6.5928 0.8920 6.3929 19 6 7.7418 0.8886 7.3679 20 1 8.6110 0.2769 7.1762 21 6 7.6840 1.6673 8.5043 22 7 6.6262 2.4134 8.7370 23 14 9.1086 1.6636 9.7126 24 1 10.3419 2.1234 9.0250 25 1 8.8020 2.5777 10.8420 26 1 9.3145 0.2874 10.2308 27 7 2.2198 -1.1083 -0.0066 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5143 31 1 1.8392 2.1308 0.0007 32 1 5.7594 -1.0928 -1.4020 33 1 4.6925 -2.3102 -2.1433 34 1 8.0807 -3.5775 -0.1567 35 1 7.7373 -1.8322 -0.2428 36 1 6.2240 -3.9250 1.3871 37 1 7.2186 -2.5861 2.0161 38 1 6.8861 -1.4301 3.1058 39 1 5.5929 0.9654 3.8580 40 1 4.8368 -0.3818 4.7422 41 1 7.0595 -1.0593 5.6090 42 1 7.8149 0.2879 4.7245 43 1 6.4423 1.9024 6.0127 44 1 5.6871 0.5547 6.8969 45 1 6.5854 2.9609 9.5367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190171537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = -8.582597 kcal Electronic energy + Delta-G solvation = -27505.911903 eV Core-core repulsion = 23651.382819 eV Total energy + Delta-G solvation = -3854.529084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03840 -39.45852 -38.75804 -35.74722 -35.03389 -33.75465 -32.83653 -31.09254 -30.90044 -28.40189 -27.50803 -26.52555 -25.46468 -23.43121 -23.04202 -22.03056 -20.75210 -20.00640 -19.49579 -18.39633 -17.33309 -16.91584 -16.48484 -16.20163 -16.02733 -15.68696 -15.47059 -15.05275 -14.82400 -14.58015 -14.36191 -14.25440 -13.80697 -13.64817 -13.14541 -13.07285 -12.64184 -12.48464 -12.32923 -12.20580 -11.90602 -11.81894 -11.79046 -11.36841 -11.17903 -10.91885 -10.75102 -10.65315 -10.60090 -10.32689 -9.92407 -9.56564 -9.51120 -9.41547 -9.17362 -8.78333 -8.61604 -8.39763 -7.83195 -6.04435 -4.07837 0.84002 1.59335 1.95055 2.31184 2.99527 3.15373 3.24377 3.29680 3.34734 3.36301 3.73207 3.96151 4.33660 4.41743 4.51989 4.58240 4.68767 4.80800 4.92373 5.08427 5.21041 5.26991 5.30547 5.31274 5.33631 5.46543 5.53351 5.61769 5.72342 5.75381 5.88276 6.02615 6.12409 6.34807 6.43035 6.56471 6.57407 6.63476 6.86972 6.96737 7.60005 7.72680 7.88062 7.91219 7.93928 8.34526 8.54500 8.98537 9.56383 11.06802 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002759 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.210871 B =10144.633265 C =11792.618042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.064 3.936 3 C -0.273 4.273 4 S 0.197 5.803 5 C 0.059 3.941 6 C 0.210 3.790 7 H 0.107 0.893 8 C 0.057 3.943 9 O -0.370 6.370 10 C 0.043 3.957 11 C 0.079 3.921 12 N -0.637 5.637 13 C 0.694 3.306 14 O -0.564 6.564 15 N -0.737 5.737 16 C 0.135 3.865 17 C -0.120 4.120 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 N -0.471 5.471 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.391 0.609 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -9.087 -23.637 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.413 4.413 4 S 0.455 5.545 5 C -0.218 4.218 6 C 0.103 3.897 7 H 0.125 0.875 8 C -0.021 4.021 9 O -0.288 6.288 10 C -0.035 4.035 11 C -0.044 4.044 12 N -0.379 5.379 13 C 0.396 3.604 14 O -0.442 6.442 15 N -0.394 5.394 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 N -0.188 5.188 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.187 0.813 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.542 -8.561 -23.596 25.350 hybrid contribution 0.227 0.064 1.311 1.332 sum -3.315 -8.497 -22.285 24.079 Atomic orbital electron populations 1.20277 0.87681 1.03089 1.02263 1.19986 0.97702 0.86483 1.02827 1.26719 0.95873 1.03639 1.15084 1.83325 1.06965 1.01302 1.62887 1.25938 0.93996 0.97853 1.04060 1.19989 0.87828 0.95943 0.85981 0.87533 1.23082 0.89425 0.93269 0.96370 1.88014 1.39160 1.50388 1.51204 1.23081 0.91694 1.02772 0.85907 1.22391 0.87654 0.95274 0.99113 1.47393 1.28373 1.39253 1.22835 1.16017 0.84211 0.80196 0.80000 1.91171 1.27960 1.48702 1.76326 1.45608 1.20659 1.49757 1.23340 1.21533 0.99570 0.92480 0.85173 1.21890 0.95592 1.01478 0.96819 1.19010 0.97227 0.93898 0.91096 1.21156 1.03154 1.26060 1.05845 0.92713 1.25030 0.95938 0.95402 0.98049 1.69957 1.28426 1.27707 1.27139 0.86640 0.82658 0.77917 0.80670 1.20238 1.21247 1.20233 1.65884 1.04075 1.31954 1.16916 0.91181 0.90945 0.91047 0.81346 0.92117 0.86773 0.87010 0.92127 0.89925 0.88788 0.77301 0.91828 0.92017 0.92805 0.92780 0.96278 0.96298 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.31 36.01 0.37 -0.39 16 2 C 0.06 0.88 6.74 -84.23 -0.57 0.32 16 3 C -0.27 -3.57 11.13 29.12 0.32 -3.24 16 4 S 0.20 2.63 19.44 -107.50 -2.09 0.54 16 5 C 0.06 0.81 4.15 -13.45 -0.06 0.75 16 6 C 0.21 2.38 3.57 -68.58 -0.25 2.14 16 7 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 8 C 0.06 0.50 6.26 37.31 0.23 0.74 16 9 O -0.37 -3.22 10.74 -35.23 -0.38 -3.60 16 10 C 0.04 0.29 6.99 37.31 0.26 0.55 16 11 C 0.08 0.61 6.64 -3.54 -0.02 0.59 16 12 N -0.64 -7.34 3.02 -171.75 -0.52 -7.86 16 13 C 0.69 10.32 7.77 -86.92 -0.68 9.64 16 14 O -0.56 -10.19 11.06 5.29 0.06 -10.13 16 15 N -0.74 -10.41 5.46 -65.22 -0.36 -10.76 16 16 C 0.14 2.35 5.68 -4.04 -0.02 2.33 16 17 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 18 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.47 -7.09 10.53 -8.06 -0.08 -7.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.61 5.65 -51.93 -0.29 0.32 16 38 H 0.39 4.41 6.00 -40.82 -0.25 4.16 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -34.39 375.96 -9.90 -44.29 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.82 Total: 0.48 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.09 Total: -1.78 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.22 Total: -51.76 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.32 Total: -13.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.09 Total: 0.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.39 -9.90 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190171537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.707 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds