Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33529 * 122.71420 * 2 1 4 4 S 1.76174 * 108.05762 * 179.88353 * 3 2 1 5 5 C 1.70973 * 90.33615 * 0.31588 * 4 3 2 6 6 N 1.38752 * 124.94186 * 179.83653 * 5 4 3 7 7 C 1.34773 * 120.00210 * 359.97438 * 6 5 4 8 8 O 1.21388 * 119.99961 * 359.97438 * 7 6 5 9 9 C 1.49311 * 119.99996 * 180.02562 * 7 6 5 10 10 O 1.21364 * 119.99772 * 354.69852 * 9 7 6 11 11 N 1.34780 * 119.99978 * 174.69942 * 9 7 6 12 12 C 1.46499 * 119.99767 * 4.03217 * 11 9 7 13 13 C 1.50703 * 109.47691 * 83.14540 * 12 11 9 14 14 H 1.08000 * 119.99231 * 359.97438 * 13 12 11 15 15 C 1.37867 * 120.00130 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00462 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99867 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47417 * 59.99766 * 17 15 13 19 19 H 1.48505 * 109.47499 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47218 * 299.99631 * 17 15 13 21 21 C 1.46497 * 120.00027 * 184.02755 * 11 9 7 22 22 C 1.53002 * 109.46986 * 84.99750 * 21 11 9 23 23 C 1.53000 * 109.46942 * 180.02562 * 22 21 11 24 24 C 1.53002 * 109.46960 * 175.00249 * 23 22 21 25 25 C 1.53005 * 109.46802 * 294.99886 * 23 22 21 26 26 N 1.29682 * 110.11181 * 359.82083 * 5 4 3 27 27 H 1.08997 * 109.47261 * 269.72922 * 1 2 3 28 28 H 1.09000 * 109.47707 * 29.73594 * 1 2 3 29 29 H 1.09007 * 109.47207 * 149.73417 * 1 2 3 30 30 H 1.08003 * 125.97566 * 359.95590 * 3 2 1 31 31 H 0.97002 * 119.99669 * 179.97438 * 6 5 4 32 32 H 1.09007 * 109.46851 * 203.14575 * 12 11 9 33 33 H 1.09001 * 109.47311 * 323.14155 * 12 11 9 34 34 H 0.97001 * 120.00634 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.47095 * 204.99599 * 21 11 9 36 36 H 1.08997 * 109.46811 * 325.00000 * 21 11 9 37 37 H 1.08994 * 109.47080 * 299.99858 * 22 21 11 38 38 H 1.09004 * 109.46926 * 60.00105 * 22 21 11 39 39 H 1.08995 * 109.47646 * 54.99747 * 23 22 21 40 40 H 1.08999 * 109.47121 * 59.99757 * 24 23 22 41 41 H 1.09002 * 109.46916 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.46697 * 299.99456 * 24 23 22 43 43 H 1.09005 * 109.47023 * 180.02562 * 25 23 22 44 44 H 1.09005 * 109.47220 * 299.99899 * 25 23 22 45 45 H 1.09000 * 109.47270 * 60.00067 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2286 1.1235 0.0000 4 16 3.9330 0.6777 0.0034 5 6 3.5102 -0.9789 -0.0049 6 7 4.4157 -2.0302 -0.0098 7 6 5.7398 -1.7791 -0.0086 8 8 6.1403 -0.6332 -0.0038 9 6 6.7142 -2.9105 -0.0145 10 8 6.3171 -4.0537 0.0769 11 7 8.0346 -2.6621 -0.1212 12 6 8.5206 -1.2802 -0.1424 13 6 8.6452 -0.7696 1.2700 14 1 8.3876 -1.4103 2.1004 15 6 9.0879 0.5153 1.5020 16 7 9.4019 1.2953 0.4908 17 14 9.2429 1.1478 3.2528 18 1 10.2011 0.2972 4.0035 19 1 9.7366 2.5482 3.2313 20 1 7.9149 1.1009 3.9156 21 6 8.9838 -3.7739 -0.2158 22 6 9.0995 -4.2230 -1.6738 23 6 10.0904 -5.3846 -1.7725 24 6 10.1130 -5.9150 -3.2075 25 6 11.4883 -4.8966 -1.3870 26 7 2.2200 -1.1097 -0.0057 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3634 0.8923 -0.5097 29 1 -0.3634 -0.8876 -0.5180 30 1 1.8361 2.1297 -0.0007 31 1 4.0956 -2.9459 -0.0141 32 1 9.4955 -1.2454 -0.6286 33 1 7.8172 -0.6561 -0.6936 34 1 9.7138 2.1992 0.6540 35 1 9.9604 -3.4494 0.1431 36 1 8.6307 -4.6058 0.3937 37 1 8.1228 -4.5475 -2.0326 38 1 9.4525 -3.3910 -2.2833 39 1 9.7843 -6.1819 -1.0952 40 1 10.4192 -5.1178 -3.8848 41 1 10.8193 -6.7423 -3.2779 42 1 9.1171 -6.2627 -3.4820 43 1 12.1944 -5.7241 -1.4578 44 1 11.7945 -4.0993 -2.0644 45 1 11.4722 -4.5187 -0.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190344476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -20.545137 kcal Electronic energy + Delta-G solvation = -27536.688340 eV Core-core repulsion = 23681.640521 eV Total energy + Delta-G solvation = -3855.047819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.70288 -39.55536 -38.34315 -36.72776 -35.52666 -34.30732 -32.54863 -31.10044 -29.51889 -27.50322 -27.20019 -27.02305 -25.74358 -23.72279 -23.11826 -21.88385 -20.74297 -19.84476 -18.83525 -17.91590 -17.09876 -16.62623 -16.54856 -15.98627 -15.63456 -15.24568 -15.02140 -14.63751 -14.44224 -14.07072 -13.96951 -13.86856 -13.38905 -12.90453 -12.89597 -12.63411 -12.52040 -12.48458 -12.40261 -12.14437 -11.93651 -11.78009 -11.21722 -11.16920 -10.93740 -10.85144 -10.73213 -10.63867 -10.58635 -10.46687 -10.32595 -10.03549 -9.73621 -9.54011 -8.96941 -8.95929 -8.38905 -8.07887 -7.90826 -6.10232 -4.14076 0.89178 1.38714 1.85720 2.10857 2.47663 2.95900 3.28195 3.32715 3.35701 3.64725 3.83142 4.38312 4.60858 4.79132 4.97271 5.03738 5.06555 5.26110 5.27290 5.42275 5.47722 5.57926 5.64903 5.72204 5.72542 5.78818 5.82243 5.87346 5.90784 5.99921 6.02658 6.14298 6.20580 6.29151 6.40429 6.48886 6.51925 6.59922 6.90740 7.26284 7.31724 7.77212 7.92191 7.95126 8.00931 8.11519 8.44093 8.87020 9.49815 10.98144 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004114 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.094041 B = 6804.366487 C = 9266.734056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.086 3.914 3 C -0.335 4.335 4 S 0.262 5.738 5 C 0.249 3.751 6 N -0.609 5.609 7 C 0.488 3.512 8 O -0.419 6.419 9 C 0.516 3.484 10 O -0.552 6.552 11 N -0.553 5.553 12 C 0.220 3.780 13 C -0.525 4.525 14 H 0.054 0.946 15 C 0.073 3.927 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.116 3.884 22 C -0.129 4.129 23 C -0.093 4.093 24 C -0.145 4.145 25 C -0.151 4.151 26 N -0.521 5.521 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.171 0.829 31 H 0.428 0.572 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 -5.731 -4.787 10.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 C -0.476 4.476 4 S 0.513 5.487 5 C -0.118 4.118 6 N -0.262 5.262 7 C 0.269 3.731 8 O -0.286 6.286 9 C 0.298 3.702 10 O -0.433 6.433 11 N -0.282 5.282 12 C 0.101 3.899 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.130 4.130 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.168 4.168 23 C -0.112 4.112 24 C -0.203 4.203 25 C -0.208 4.208 26 N -0.245 5.245 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.189 0.811 31 H 0.268 0.732 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.044 -5.302 -4.787 9.357 hybrid contribution -0.975 0.021 1.081 1.456 sum -7.019 -5.281 -3.705 9.533 Atomic orbital electron populations 1.20305 0.87571 1.02906 1.02604 1.19749 0.97419 0.86108 1.01392 1.27296 0.99434 1.03634 1.17194 1.85447 1.01102 0.95647 1.66485 1.23399 0.90456 0.94861 1.03037 1.42591 1.04065 1.08987 1.70565 1.20858 0.81973 0.91451 0.78804 1.90886 1.75165 1.21495 1.41037 1.19173 0.83963 0.87304 0.79805 1.90694 1.78909 1.21729 1.51932 1.48292 1.03716 1.11022 1.65162 1.20162 0.96627 0.74208 0.98892 1.21179 1.45315 0.98409 0.91453 0.92747 1.24782 0.94983 0.96327 0.96952 1.69897 1.44132 1.08176 1.30266 0.86672 0.78550 0.77954 0.84942 1.20287 1.21100 1.20191 1.21604 0.93311 0.89386 0.96397 1.22012 0.99446 0.98041 0.97299 1.21038 0.95485 0.97536 0.97114 1.21823 1.01404 1.00651 0.96374 1.21921 0.95911 1.00906 1.02077 1.66132 1.02332 1.32708 1.23368 0.90965 0.90929 0.90935 0.81136 0.73196 0.94657 0.90819 0.92653 0.89278 0.90667 0.91786 0.91455 0.91175 0.92735 0.92953 0.92853 0.93104 0.92526 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.31 36.00 0.37 -0.39 16 2 C 0.09 1.24 6.74 -84.21 -0.57 0.67 16 3 C -0.33 -4.63 11.11 29.08 0.32 -4.31 16 4 S 0.26 4.43 20.21 -107.50 -2.17 2.25 16 5 C 0.25 4.32 8.18 -87.55 -0.72 3.60 16 6 N -0.61 -10.49 5.39 -13.55 -0.07 -10.56 16 7 C 0.49 9.59 7.73 -11.65 -0.09 9.50 16 8 O -0.42 -9.25 9.85 5.46 0.05 -9.19 16 9 C 0.52 10.28 7.63 -11.65 -0.09 10.19 16 10 O -0.55 -11.00 16.12 5.48 0.09 -10.91 16 11 N -0.55 -11.10 2.49 -175.62 -0.44 -11.54 16 12 C 0.22 5.16 4.74 -5.19 -0.02 5.13 16 13 C -0.52 -13.69 8.36 -34.44 -0.29 -13.97 16 14 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 15 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 16 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.12 1.94 5.11 -4.04 -0.02 1.92 16 22 C -0.13 -1.86 4.97 -26.73 -0.13 -1.99 16 23 C -0.09 -1.09 2.92 -90.62 -0.26 -1.36 16 24 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 25 C -0.15 -1.71 8.95 37.16 0.33 -1.37 16 26 N -0.52 -8.61 10.58 -11.33 -0.12 -8.73 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.43 6.64 8.30 -40.82 -0.34 6.30 16 32 H 0.04 0.86 8.02 -51.93 -0.42 0.44 16 33 H 0.07 1.87 5.37 -51.93 -0.28 1.59 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.09 1.48 6.46 -51.93 -0.34 1.14 16 36 H 0.07 1.25 7.52 -51.93 -0.39 0.86 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.73 6.57 -51.93 -0.34 0.38 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -29.43 386.14 -8.77 -38.19 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.72 Total: 4.26 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.92 Total: 8.30 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.11 Total: -54.70 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.14 Total: -20.10 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.17 Total: 2.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.43 -8.77 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190344476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds