Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33529 * 122.71420 * 2 1 4 4 S 1.76174 * 108.05762 * 179.88353 * 3 2 1 5 5 C 1.70973 * 90.33615 * 0.31588 * 4 3 2 6 6 N 1.38752 * 124.94186 * 179.83653 * 5 4 3 7 7 C 1.34773 * 120.00210 * 359.97438 * 6 5 4 8 8 O 1.21388 * 119.99961 * 359.97438 * 7 6 5 9 9 C 1.49311 * 119.99996 * 180.02562 * 7 6 5 10 10 O 1.21364 * 119.99772 * 354.69852 * 9 7 6 11 11 N 1.34780 * 119.99978 * 174.69942 * 9 7 6 12 12 C 1.46499 * 119.99767 * 4.03217 * 11 9 7 13 13 C 1.50703 * 109.47691 * 83.14540 * 12 11 9 14 14 H 1.08000 * 119.99231 * 359.97438 * 13 12 11 15 15 C 1.37867 * 120.00130 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00462 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99867 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47417 * 59.99766 * 17 15 13 19 19 H 1.48505 * 109.47499 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47218 * 299.99631 * 17 15 13 21 21 C 1.46497 * 120.00027 * 184.02755 * 11 9 7 22 22 C 1.53002 * 109.46986 * 84.99750 * 21 11 9 23 23 C 1.53000 * 109.46942 * 180.02562 * 22 21 11 24 24 C 1.53002 * 109.46960 * 175.00249 * 23 22 21 25 25 C 1.53005 * 109.46802 * 294.99886 * 23 22 21 26 26 N 1.29682 * 110.11181 * 359.82083 * 5 4 3 27 27 H 1.08997 * 109.47261 * 269.72922 * 1 2 3 28 28 H 1.09000 * 109.47707 * 29.73594 * 1 2 3 29 29 H 1.09007 * 109.47207 * 149.73417 * 1 2 3 30 30 H 1.08003 * 125.97566 * 359.95590 * 3 2 1 31 31 H 0.97002 * 119.99669 * 179.97438 * 6 5 4 32 32 H 1.09007 * 109.46851 * 203.14575 * 12 11 9 33 33 H 1.09001 * 109.47311 * 323.14155 * 12 11 9 34 34 H 0.97001 * 120.00634 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.47095 * 204.99599 * 21 11 9 36 36 H 1.08997 * 109.46811 * 325.00000 * 21 11 9 37 37 H 1.08994 * 109.47080 * 299.99858 * 22 21 11 38 38 H 1.09004 * 109.46926 * 60.00105 * 22 21 11 39 39 H 1.08995 * 109.47646 * 54.99747 * 23 22 21 40 40 H 1.08999 * 109.47121 * 59.99757 * 24 23 22 41 41 H 1.09002 * 109.46916 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.46697 * 299.99456 * 24 23 22 43 43 H 1.09005 * 109.47023 * 180.02562 * 25 23 22 44 44 H 1.09005 * 109.47220 * 299.99899 * 25 23 22 45 45 H 1.09000 * 109.47270 * 60.00067 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2286 1.1235 0.0000 4 16 3.9330 0.6777 0.0034 5 6 3.5102 -0.9789 -0.0049 6 7 4.4157 -2.0302 -0.0098 7 6 5.7398 -1.7791 -0.0086 8 8 6.1403 -0.6332 -0.0038 9 6 6.7142 -2.9105 -0.0145 10 8 6.3171 -4.0537 0.0769 11 7 8.0346 -2.6621 -0.1212 12 6 8.5206 -1.2802 -0.1424 13 6 8.6452 -0.7696 1.2700 14 1 8.3876 -1.4103 2.1004 15 6 9.0879 0.5153 1.5020 16 7 9.4019 1.2953 0.4908 17 14 9.2429 1.1478 3.2528 18 1 10.2011 0.2972 4.0035 19 1 9.7366 2.5482 3.2313 20 1 7.9149 1.1009 3.9156 21 6 8.9838 -3.7739 -0.2158 22 6 9.0995 -4.2230 -1.6738 23 6 10.0904 -5.3846 -1.7725 24 6 10.1130 -5.9150 -3.2075 25 6 11.4883 -4.8966 -1.3870 26 7 2.2200 -1.1097 -0.0057 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3634 0.8923 -0.5097 29 1 -0.3634 -0.8876 -0.5180 30 1 1.8361 2.1297 -0.0007 31 1 4.0956 -2.9459 -0.0141 32 1 9.4955 -1.2454 -0.6286 33 1 7.8172 -0.6561 -0.6936 34 1 9.7138 2.1992 0.6540 35 1 9.9604 -3.4494 0.1431 36 1 8.6307 -4.6058 0.3937 37 1 8.1228 -4.5475 -2.0326 38 1 9.4525 -3.3910 -2.2833 39 1 9.7843 -6.1819 -1.0952 40 1 10.4192 -5.1178 -3.8848 41 1 10.8193 -6.7423 -3.2779 42 1 9.1171 -6.2627 -3.4820 43 1 12.1944 -5.7241 -1.4578 44 1 11.7945 -4.0993 -2.0644 45 1 11.4722 -4.5187 -0.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190344476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -37.192604 kcal Electronic energy + Delta-G solvation = -27537.410228 eV Core-core repulsion = 23681.640521 eV Total energy + Delta-G solvation = -3855.769707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.22726 -40.84909 -39.83101 -38.04005 -36.90662 -35.81002 -34.48098 -32.22523 -30.89240 -29.03347 -28.47443 -27.97130 -27.15709 -25.04070 -24.94675 -23.28493 -22.08079 -20.87460 -20.23243 -19.29086 -18.80582 -18.35731 -17.98978 -17.40786 -17.18356 -16.77736 -16.33580 -16.16682 -15.89393 -15.38081 -15.18589 -15.04133 -14.60055 -14.33628 -14.25785 -14.08053 -13.75671 -13.69581 -13.55179 -13.28896 -13.19026 -12.99041 -12.81616 -12.72040 -12.45539 -12.26231 -12.12514 -11.91766 -11.87364 -11.82986 -11.62435 -11.51592 -11.39388 -10.82782 -10.71664 -10.29209 -10.24904 -9.65679 -9.26607 -8.14337 -6.23796 -0.43539 0.10487 0.37633 0.83161 1.11321 1.40113 1.41800 1.48235 1.70681 2.11346 2.31204 2.46719 3.17322 3.19520 3.50921 3.92042 3.94307 4.06879 4.27599 4.32859 4.40128 4.53328 4.62007 4.65410 4.73914 4.82507 4.83579 4.86424 4.87390 4.91873 4.93856 5.06247 5.12526 5.15110 5.32041 5.36077 5.39532 5.43661 5.49446 5.53846 5.66857 5.76372 6.09490 6.22237 6.45274 6.69375 6.77431 6.90732 7.42961 8.93217 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004114 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.094041 B = 6804.366487 C = 9266.734056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.070 3.930 3 C -0.309 4.309 4 S 0.213 5.787 5 C 0.230 3.770 6 N -0.598 5.598 7 C 0.490 3.510 8 O -0.448 6.448 9 C 0.515 3.485 10 O -0.552 6.552 11 N -0.557 5.557 12 C 0.238 3.762 13 C -0.529 4.529 14 H 0.045 0.955 15 C 0.030 3.970 16 N -0.914 5.914 17 Si 0.944 3.056 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.113 3.887 22 C -0.120 4.120 23 C -0.089 4.089 24 C -0.142 4.142 25 C -0.150 4.150 26 N -0.523 5.523 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.206 0.794 31 H 0.435 0.565 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -6.113 -4.529 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.449 4.449 4 S 0.463 5.537 5 C -0.136 4.136 6 N -0.251 5.251 7 C 0.271 3.729 8 O -0.317 6.317 9 C 0.297 3.703 10 O -0.433 6.433 11 N -0.286 5.286 12 C 0.118 3.882 13 C -0.568 4.568 14 H 0.063 0.937 15 C -0.171 4.171 16 N -0.553 5.553 17 Si 0.770 3.230 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.009 4.009 22 C -0.158 4.158 23 C -0.108 4.108 24 C -0.200 4.200 25 C -0.207 4.207 26 N -0.248 5.248 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.223 0.777 31 H 0.276 0.724 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.240 -5.725 -4.529 10.281 hybrid contribution -0.757 0.126 0.985 1.249 sum -7.997 -5.599 -3.543 10.385 Atomic orbital electron populations 1.20451 0.84345 1.04363 1.03867 1.20485 0.99349 0.85439 1.00916 1.27586 0.96821 1.05181 1.15306 1.85601 1.04420 0.96527 1.67175 1.23457 0.90738 0.94630 1.04800 1.42367 1.03414 1.09481 1.69856 1.20785 0.82651 0.90911 0.78598 1.90888 1.75908 1.22277 1.42660 1.19258 0.83988 0.87461 0.79607 1.90682 1.78873 1.21698 1.52030 1.48255 1.04371 1.10612 1.65358 1.19702 0.95461 0.75708 0.97338 1.21354 1.44742 0.98443 0.92237 0.93714 1.25433 0.94897 0.96612 1.00120 1.69990 1.45070 1.08413 1.31863 0.85836 0.78316 0.77756 0.81111 1.19386 1.20482 1.20567 1.21806 0.92547 0.88351 0.98184 1.21931 0.99891 0.98800 0.95210 1.21029 0.94865 0.96459 0.98421 1.21799 1.01970 1.01126 0.95079 1.21910 0.96023 1.01444 1.01323 1.66197 1.01954 1.33993 1.22653 0.89672 0.88249 0.90784 0.77737 0.72405 0.95806 0.92524 0.92635 0.89290 0.90324 0.92554 0.92309 0.90593 0.92868 0.91239 0.92823 0.91215 0.93023 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.31 71.23 0.73 -0.48 16 2 C 0.07 1.85 6.74 41.48 0.28 2.13 16 3 C -0.31 -7.90 11.11 66.75 0.74 -7.16 16 4 S 0.21 7.22 20.21 -56.49 -1.14 6.07 16 5 C 0.23 7.99 8.18 179.27 1.47 9.45 16 6 N -0.60 -20.91 5.39 -315.12 -1.70 -22.61 16 7 C 0.49 19.76 7.73 87.23 0.67 20.44 16 8 O -0.45 -20.53 9.85 -3.36 -0.03 -20.56 16 9 C 0.52 20.89 7.63 87.23 0.67 21.55 16 10 O -0.55 -22.00 16.12 -3.29 -0.05 -22.05 16 11 N -0.56 -22.89 2.49 -827.90 -2.06 -24.95 16 12 C 0.24 11.53 4.74 85.63 0.41 11.94 16 13 C -0.53 -28.14 8.36 25.60 0.21 -27.92 16 14 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 15 C 0.03 1.61 5.46 84.65 0.46 2.08 16 16 N -0.91 -51.61 13.29 21.44 0.28 -51.32 16 17 Si 0.94 43.24 29.54 68.60 2.03 45.27 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.11 3.81 5.11 86.38 0.44 4.25 16 22 C -0.12 -3.44 4.97 30.59 0.15 -3.28 16 23 C -0.09 -1.99 2.92 -10.79 -0.03 -2.02 16 24 C -0.14 -2.73 9.19 71.98 0.66 -2.07 16 25 C -0.15 -3.22 8.95 71.98 0.64 -2.58 16 26 N -0.52 -16.76 10.58 -189.75 -2.01 -18.77 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.21 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.43 13.57 8.30 -92.71 -0.77 12.81 16 32 H 0.02 1.20 8.02 -2.38 -0.02 1.18 16 33 H 0.06 3.00 5.37 -2.45 -0.01 2.99 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.09 2.99 6.46 -2.39 -0.02 2.98 16 36 H 0.08 2.60 7.52 -2.39 -0.02 2.58 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.05 1.20 6.57 -2.39 -0.02 1.19 16 Total: -1.00 -63.31 386.14 3.07 -60.24 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.24 Total: 22.36 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 7.51 Total: 26.32 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.48 Total: -117.65 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.09 Total: -42.61 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.14 Total: 6.07 kcal Total: -63.31 3.07 -60.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190344476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.049 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds