Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33635 * 122.75222 * 2 1 4 4 S 1.76195 * 107.92383 * 180.02562 * 3 2 1 5 5 C 1.70977 * 90.28561 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91972 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47346 * 270.02973 * 6 5 4 8 8 C 1.50703 * 109.46883 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99892 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00211 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47008 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.51827 * 305.10167 * 12 11 10 14 14 C 1.53301 * 109.51282 * 185.00162 * 12 11 10 15 15 N 1.47148 * 108.38622 * 187.77478 * 14 12 11 16 16 C 1.36932 * 120.98428 * 230.51079 * 15 14 12 17 17 H 1.08003 * 120.00196 * 154.04729 * 16 15 14 18 18 C 1.38806 * 120.00082 * 333.77790 * 16 15 14 19 19 N 1.31624 * 119.99582 * 343.08776 * 18 16 15 20 20 Si 1.86798 * 120.00546 * 163.09121 * 18 16 15 21 21 H 1.48495 * 109.47064 * 59.99643 * 20 18 16 22 22 H 1.48505 * 109.47376 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46734 * 299.99609 * 20 18 16 24 24 C 1.47158 * 118.03476 * 50.78178 * 15 14 12 25 25 C 1.53710 * 108.16341 * 309.15904 * 24 15 14 26 26 O 1.42958 * 109.14554 * 52.53800 * 25 24 15 27 27 N 1.29035 * 110.16230 * 0.24615 * 5 4 3 28 28 H 1.09000 * 109.47084 * 89.99852 * 1 2 3 29 29 H 1.08999 * 109.47461 * 210.00123 * 1 2 3 30 30 H 1.09000 * 109.46890 * 330.00465 * 1 2 3 31 31 H 1.07998 * 126.03964 * 0.03731 * 3 2 1 32 32 H 1.09004 * 109.46983 * 150.02325 * 6 5 4 33 33 H 1.08998 * 109.46857 * 30.03186 * 6 5 4 34 34 H 1.08999 * 109.47172 * 60.00315 * 7 6 5 35 35 H 1.08998 * 109.47317 * 299.99932 * 7 6 5 36 36 H 0.97011 * 119.99799 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46785 * 60.00319 * 11 10 8 38 38 H 1.08998 * 109.47138 * 300.00283 * 11 10 8 39 39 H 1.08999 * 109.67904 * 68.04773 * 14 12 11 40 40 H 1.08998 * 109.67627 * 307.49596 * 14 12 11 41 41 H 0.97006 * 120.00011 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.67939 * 68.94327 * 24 15 14 43 43 H 1.09003 * 109.67961 * 189.49029 * 24 15 14 44 44 H 1.09002 * 109.65710 * 292.57231 * 25 24 15 45 45 H 1.09004 * 109.43847 * 172.37301 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0002 6 6 4.4834 -2.1273 -0.0010 7 6 4.8141 -2.5145 -1.4438 8 6 5.7941 -3.6594 -1.4445 9 8 6.1887 -4.1205 -0.3944 10 7 6.2312 -4.1716 -2.6119 11 6 7.1834 -5.2850 -2.6126 12 6 7.5143 -5.6721 -4.0554 13 1 6.5921 -5.8873 -4.5953 14 6 8.4116 -6.9151 -4.0591 15 7 8.8668 -7.1548 -5.4377 16 6 8.7437 -8.3899 -6.0159 17 1 8.6734 -8.4788 -7.0900 18 6 8.7149 -9.5282 -5.2221 19 7 9.1316 -9.4713 -3.9748 20 14 8.0851 -11.1408 -5.9237 21 1 8.9211 -11.5350 -7.0860 22 1 8.1578 -12.1962 -4.8815 23 1 6.6759 -10.9732 -6.3616 24 6 9.4637 -6.0296 -6.1745 25 6 8.5103 -4.8285 -6.0697 26 8 8.2018 -4.5934 -4.6937 27 7 2.2198 -1.1084 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8393 2.1307 0.0006 32 1 4.0434 -2.9820 0.5129 33 1 5.3961 -1.8251 0.5124 34 1 5.2541 -1.6599 -1.9576 35 1 3.9014 -2.8167 -1.9572 36 1 5.9153 -3.8030 -3.4518 37 1 6.7436 -6.1395 -2.0985 38 1 8.0963 -4.9826 -2.0995 39 1 7.8464 -7.7768 -3.7039 40 1 9.2726 -6.7481 -3.4120 41 1 9.1118 -10.2669 -3.4201 42 1 10.4290 -5.7750 -5.7368 43 1 9.5958 -6.3047 -7.2209 44 1 7.5921 -5.0403 -6.6176 45 1 8.9912 -3.9457 -6.4910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753651888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -45.940423 kcal Electronic energy + Delta-G solvation = -26253.883334 eV Core-core repulsion = 22397.734294 eV Total energy + Delta-G solvation = -3856.149041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07673 -40.69367 -39.94159 -36.48057 -35.87984 -35.19145 -33.25801 -32.66390 -31.84895 -29.16064 -28.55573 -27.88335 -26.30003 -25.04380 -23.51298 -22.86998 -21.72515 -21.03822 -20.66688 -18.92627 -18.70254 -18.06771 -17.52270 -17.13509 -16.88347 -16.60146 -16.17907 -16.00584 -15.87104 -15.51832 -15.22917 -15.03380 -14.92867 -14.56514 -14.47134 -14.12769 -13.89323 -13.65738 -13.43016 -13.27179 -13.16190 -12.99663 -12.86357 -12.64404 -12.53322 -12.20762 -12.20011 -12.16291 -12.12405 -11.87058 -11.31703 -11.03518 -10.77536 -10.61488 -10.54576 -10.37013 -10.11857 -9.62854 -8.75785 -7.91747 -5.39276 -0.27924 0.42010 0.80570 1.46192 1.48447 1.55560 1.63051 1.76323 2.15201 2.47685 2.79299 3.08375 3.23251 3.50184 3.67076 3.94572 4.02950 4.07102 4.10149 4.19346 4.27494 4.30469 4.40761 4.45984 4.52876 4.54726 4.59985 4.68992 4.77050 4.78701 4.84570 4.85089 4.98097 4.99307 5.05406 5.07263 5.22911 5.37199 5.39847 5.52552 5.59442 6.26153 6.32727 6.54852 6.80075 7.04904 7.23726 7.74074 8.27619 9.13717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.001909 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390824 B =14660.276972 C =15146.522695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 C -0.261 4.261 4 S 0.149 5.851 5 C 0.039 3.961 6 C -0.025 4.025 7 C -0.120 4.120 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.710 5.710 11 C 0.143 3.857 12 C 0.077 3.923 13 H 0.065 0.935 14 C 0.158 3.842 15 N -0.614 5.614 16 C -0.267 4.267 17 H 0.074 0.926 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.101 3.899 25 C 0.057 3.943 26 O -0.389 6.389 27 N -0.499 5.499 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.204 0.796 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.416 0.584 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.066 0.934 40 H -0.001 1.001 41 H 0.251 0.749 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 24.438 4.036 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.400 4.400 4 S 0.405 5.595 5 C -0.238 4.238 6 C -0.067 4.067 7 C -0.161 4.161 8 C 0.300 3.700 9 O -0.465 6.465 10 N -0.362 5.362 11 C 0.018 3.982 12 C 0.017 3.983 13 H 0.083 0.917 14 C 0.031 3.969 15 N -0.338 5.338 16 C -0.397 4.397 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.025 4.025 25 C -0.020 4.020 26 O -0.308 6.308 27 N -0.215 5.215 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.221 0.779 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.912 24.170 4.950 28.324 hybrid contribution -0.813 -1.544 -0.526 1.823 sum -14.726 22.625 4.424 27.355 Atomic orbital electron populations 1.20439 0.85568 1.03992 1.03671 1.20775 0.99562 0.86492 1.02062 1.27213 0.94933 1.04916 1.12947 1.83956 1.07354 1.01211 1.67028 1.26988 0.93848 0.99339 1.03637 1.19901 0.95912 0.93744 0.97117 1.21573 0.99315 0.97057 0.98139 1.21071 0.81675 0.84255 0.82981 1.90711 1.60081 1.63062 1.32688 1.45841 1.45606 1.35342 1.09411 1.21060 0.92727 0.89734 0.94685 1.22744 0.95051 0.88163 0.92325 0.91731 1.21100 0.94928 0.94964 0.85860 1.44360 1.69767 1.07268 1.12445 1.19522 1.44329 0.83580 0.92220 0.90793 1.25859 1.00706 1.01066 0.97092 1.70180 1.49633 1.29338 1.08983 0.85293 0.78741 0.78933 0.77195 1.19996 1.22220 1.20107 1.21927 0.94731 0.88947 0.96860 1.23154 0.98375 0.98593 0.81903 1.87795 1.77852 1.39898 1.25259 1.66161 1.05266 1.33168 1.16941 0.89877 0.91444 0.88592 0.77935 0.89627 0.88552 0.86007 0.86952 0.74753 0.90954 0.92192 0.91549 0.98247 0.93951 0.96674 0.90953 0.92702 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.31 71.24 0.73 -0.13 16 2 C 0.04 0.71 6.74 41.52 0.28 0.99 16 3 C -0.26 -3.37 11.13 66.78 0.74 -2.63 16 4 S 0.15 2.10 23.18 -56.49 -1.31 0.79 16 5 C 0.04 0.74 6.64 88.52 0.59 1.33 16 6 C -0.03 -0.50 5.08 29.85 0.15 -0.35 16 7 C -0.12 -2.10 5.68 29.85 0.17 -1.93 16 8 C 0.51 13.42 7.83 87.66 0.69 14.11 16 9 O -0.58 -20.44 15.98 -3.04 -0.05 -20.49 16 10 N -0.71 -18.37 5.51 -463.06 -2.55 -20.92 16 11 C 0.14 4.78 5.34 86.38 0.46 5.24 16 12 C 0.08 2.81 2.81 30.69 0.09 2.89 16 13 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.16 7.60 4.73 86.36 0.41 8.01 16 15 N -0.61 -30.46 3.04 -696.73 -2.12 -32.58 16 16 C -0.27 -14.38 9.65 84.03 0.81 -13.57 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 18 C -0.05 -2.85 4.95 84.86 0.42 -2.44 16 19 N -0.94 -55.25 11.14 21.65 0.24 -55.01 16 20 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.10 4.02 6.76 86.49 0.58 4.60 16 25 C 0.06 1.78 7.00 72.22 0.51 2.29 16 26 O -0.39 -13.31 10.33 -148.98 -1.54 -14.85 16 27 N -0.50 -10.77 10.53 -179.40 -1.89 -12.66 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.09 1.97 8.10 -2.38 -0.02 1.96 16 33 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.42 8.48 8.47 -92.70 -0.79 7.69 16 37 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 3.57 6.14 -2.39 -0.01 3.56 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 2.69 7.96 -2.39 -0.02 2.68 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -72.46 385.99 -0.34 -72.80 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.21 Total: 18.23 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.63 Total: 18.42 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -6.32 Total: -121.17 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.59 Total: -35.34 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.79 kcal Total: -72.46 -0.34 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753651888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.863 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds