Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50698 * 126.80687 * 180.20620 * 4 3 2 6 6 N 1.46891 * 109.47164 * 94.99982 * 5 4 3 7 7 C 1.46900 * 110.99804 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.30668 * 327.17417 * 7 6 5 9 9 C 1.54389 * 110.34667 * 89.46349 * 7 6 5 10 10 N 1.48147 * 104.61704 * 95.00164 * 9 7 6 11 11 C 1.34777 * 127.83626 * 219.60745 * 10 9 7 12 12 O 1.21283 * 120.00027 * 359.95488 * 11 10 9 13 13 C 1.50698 * 120.00117 * 179.97438 * 11 10 9 14 14 S 1.81000 * 109.47420 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00054 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00325 * 179.97438 * 15 14 13 18 18 N 1.31640 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00621 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46948 * 59.99898 * 19 17 15 21 21 H 1.48496 * 109.47496 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46739 * 300.00153 * 19 17 15 23 23 C 1.48143 * 104.32531 * 39.59054 * 10 9 7 24 24 C 1.54294 * 110.34410 * 204.99895 * 7 6 5 25 25 H 1.09001 * 110.34182 * 122.15037 * 24 7 6 26 26 C 1.53000 * 110.33975 * 359.97438 * 24 7 6 27 27 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 28 28 O 1.20926 * 111.60451 * 359.97438 * 27 4 3 29 29 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 30 30 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 31 31 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 32 32 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46710 * 215.00425 * 5 4 3 34 34 H 1.09003 * 109.46657 * 334.99821 * 5 4 3 35 35 H 1.00903 * 111.00299 * 303.95432 * 6 5 4 36 36 H 1.08995 * 110.41078 * 213.79149 * 9 7 6 37 37 H 1.09007 * 110.40052 * 336.21975 * 9 7 6 38 38 H 1.09000 * 109.47238 * 300.00104 * 13 11 10 39 39 H 1.09000 * 109.46961 * 60.00032 * 13 11 10 40 40 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.40917 * 201.63089 * 23 10 9 42 42 H 1.08996 * 110.50508 * 79.24342 * 23 10 9 43 43 H 1.09003 * 109.47166 * 59.99955 * 26 24 7 44 44 H 1.09004 * 109.47216 * 179.97438 * 26 24 7 45 45 H 1.08995 * 109.47330 * 299.99984 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0132 6 7 5.3975 1.4430 1.3953 7 6 6.6652 2.1838 1.4412 8 1 7.2576 1.9754 0.5502 9 6 6.3972 3.6990 1.5679 10 7 6.4718 3.9715 3.0222 11 6 5.6905 4.7936 3.7504 12 8 4.7997 5.4171 3.2131 13 6 5.9241 4.9385 5.2321 14 16 4.7232 6.1042 5.9211 15 6 5.2131 6.0836 7.6135 16 1 6.0395 5.4640 7.9290 17 6 4.5377 6.8645 8.5411 18 7 3.5307 7.6202 8.1566 19 14 5.0574 6.8433 10.3352 20 1 6.4682 7.2930 10.4472 21 1 4.1830 7.7559 11.1148 22 1 4.9338 5.4634 10.8700 23 6 7.5997 3.1351 3.4945 24 6 7.4581 1.8121 2.7115 25 1 8.4399 1.4210 2.4445 26 6 6.6841 0.7846 3.5399 27 7 3.4764 -0.7563 0.0043 28 8 2.3095 -1.0736 -0.0015 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0344 2.1271 0.0004 33 1 5.6634 0.7583 -0.5729 34 1 4.7651 2.2876 -0.4213 35 1 4.6996 1.8851 1.9746 36 1 7.1608 4.2659 1.0353 37 1 5.4059 3.9428 1.1858 38 1 5.8075 3.9682 5.7149 39 1 6.9333 5.3118 5.4060 40 1 3.0583 8.1656 8.8049 41 1 7.5155 2.9535 4.5659 42 1 8.5519 3.6129 3.2643 43 1 6.5232 -0.1147 2.9453 44 1 7.2564 0.5320 4.4325 45 1 5.7214 1.2042 3.8318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755103066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = 33.839987 kcal Electronic energy + Delta-G solvation = -26776.086895 eV Core-core repulsion = 22923.397392 eV Total energy + Delta-G solvation = -3852.689503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.11666 -40.17169 -37.96827 -35.88615 -33.97711 -33.28822 -32.44111 -32.09280 -30.15242 -28.18722 -27.99945 -26.47700 -25.69607 -25.42209 -23.27318 -22.90559 -20.49796 -19.78395 -19.38895 -17.83470 -17.75569 -17.38118 -16.75150 -16.50058 -15.78139 -15.19671 -14.83196 -14.79578 -14.55942 -14.30789 -14.12950 -13.89587 -13.84943 -13.58047 -13.24453 -13.02048 -12.79812 -12.76987 -12.66241 -12.39450 -12.27862 -11.90772 -11.80687 -11.41560 -11.19011 -11.05773 -11.04670 -11.00917 -10.84246 -10.75768 -10.40180 -9.83652 -9.53840 -9.45017 -9.07138 -8.95379 -8.43405 -8.25964 -6.51994 -6.22765 -3.93696 1.25355 1.95870 2.86165 2.88228 3.01472 3.22852 3.24971 3.28397 3.59072 3.77619 4.00509 4.18836 4.22596 4.35001 4.40708 4.77624 4.83050 4.90264 4.92870 5.04022 5.05209 5.05503 5.10232 5.12373 5.23792 5.26864 5.31489 5.47015 5.48736 5.50276 5.57611 5.58941 5.68329 5.72702 5.81360 5.88324 5.97161 6.07324 6.12571 6.24959 6.40998 6.69823 7.00564 7.58114 7.67960 8.07792 8.33894 8.51421 9.22439 10.84632 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.002548 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.596204 B =10986.737467 C =12165.751321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.231 4.231 4 C 0.022 3.978 5 C 0.136 3.864 6 N -0.668 5.668 7 C 0.078 3.922 8 H 0.094 0.906 9 C 0.077 3.923 10 N -0.627 5.627 11 C 0.555 3.445 12 O -0.518 6.518 13 C -0.146 4.146 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.101 3.899 24 C -0.095 4.095 25 H 0.086 0.914 26 C -0.124 4.124 27 N -0.349 5.349 28 O 0.098 5.902 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.351 0.649 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -15.964 -18.144 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.253 4.253 4 C -0.138 4.138 5 C 0.006 3.994 6 N -0.300 5.300 7 C -0.033 4.033 8 H 0.113 0.887 9 C -0.049 4.049 10 N -0.364 5.364 11 C 0.344 3.656 12 O -0.393 6.393 13 C -0.296 4.296 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.023 4.023 24 C -0.115 4.115 25 H 0.104 0.896 26 C -0.182 4.182 27 N -0.052 5.052 28 O 0.030 5.970 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.188 0.812 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.352 -16.468 -18.806 25.108 hybrid contribution 0.790 1.054 1.607 2.078 sum 3.143 -15.415 -17.199 23.308 Atomic orbital electron populations 1.20354 0.83982 1.04893 1.04025 1.24503 0.96433 0.86123 1.02548 1.22498 0.91494 1.01182 1.10084 1.23357 0.96785 0.90127 1.03498 1.20212 0.90490 0.97185 0.91498 1.60654 1.05977 1.54837 1.08580 1.22588 0.91389 0.90287 0.99076 0.88743 1.22983 1.02721 0.96000 0.83156 1.48957 1.33882 1.45304 1.08258 1.20009 0.80068 0.77216 0.88335 1.90705 1.31336 1.44679 1.72552 1.23495 1.06584 1.06175 0.93393 1.85371 1.39689 1.52610 1.05701 1.22813 1.20798 1.31647 0.93072 0.90984 1.24988 0.94574 0.94513 0.99462 1.70010 1.19657 1.25531 1.35138 0.86224 0.78595 0.78217 0.82476 1.19923 1.20795 1.19906 1.22525 0.89548 0.90019 1.00159 1.22155 0.99250 0.95443 0.94623 0.89555 1.21515 0.99623 0.98711 0.98313 1.73847 0.96645 1.16337 1.18358 1.84833 1.11415 1.33294 1.67416 0.89465 0.89780 0.88847 0.81190 0.89190 0.92630 0.82889 0.91008 0.90169 0.89277 0.89340 0.92122 0.89732 0.91163 0.91506 0.93507 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.45 36.01 0.38 0.00 16 2 C -0.03 -0.29 7.49 -35.30 -0.26 -0.56 16 3 C -0.23 -2.22 11.06 -39.38 -0.44 -2.66 16 4 C 0.02 0.24 6.84 -82.10 -0.56 -0.33 16 5 C 0.14 1.23 6.13 -4.98 -0.03 1.20 16 6 N -0.67 -6.65 4.47 -106.51 -0.48 -7.13 16 7 C 0.08 0.68 3.37 -66.31 -0.22 0.46 16 8 H 0.09 0.66 7.82 -51.93 -0.41 0.25 16 9 C 0.08 0.84 6.49 -2.41 -0.02 0.83 16 10 N -0.63 -8.72 3.32 -169.31 -0.56 -9.29 16 11 C 0.55 10.57 7.93 -10.99 -0.09 10.48 16 12 O -0.52 -11.83 16.13 5.55 0.09 -11.74 16 13 C -0.15 -3.00 5.13 36.00 0.18 -2.81 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 19 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.10 1.07 6.46 -2.41 -0.02 1.05 16 24 C -0.09 -0.84 3.66 -89.22 -0.33 -1.16 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.12 -1.26 8.09 37.16 0.30 -0.96 16 27 N -0.35 -4.34 12.07 33.42 0.40 -3.93 16 28 O 0.10 1.10 11.20 17.19 0.19 1.29 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.35 4.16 8.03 -39.29 -0.32 3.84 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.00 7.73 -51.93 -0.40 0.59 16 38 H 0.09 1.72 7.95 -51.92 -0.41 1.30 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 0.93 7.02 -51.93 -0.36 0.57 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -35.18 389.40 -8.78 -43.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.89 Total: 1.27 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.90 Total: -7.40 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.10 Total: -45.76 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.28 Total: -10.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.18 -8.78 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755103066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.794 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds