Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37475 * 123.35066 * 2 1 4 4 C 1.33815 * 115.09563 * 179.76660 * 3 2 1 5 5 S 1.70615 * 110.95825 * 0.49108 * 4 3 2 6 6 C 1.36648 * 123.35086 * 180.29856 * 2 1 3 7 7 C 1.46578 * 125.45696 * 0.02562 * 6 2 1 8 8 O 1.21701 * 120.00358 * 359.97438 * 7 6 2 9 9 N 1.34784 * 120.00083 * 180.02562 * 7 6 2 10 10 C 1.46497 * 120.00213 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47147 * 34.99794 * 10 9 7 12 12 C 1.53002 * 109.47141 * 274.99946 * 10 9 7 13 13 C 1.52996 * 109.47171 * 154.99987 * 10 9 7 14 14 H 1.09000 * 109.46980 * 294.99773 * 13 10 9 15 15 C 1.52998 * 109.47194 * 54.99900 * 13 10 9 16 16 N 1.46899 * 109.47351 * 175.00265 * 13 10 9 17 17 C 1.46901 * 111.00309 * 155.00155 * 16 13 10 18 18 C 1.50698 * 109.46936 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00088 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99896 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99896 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00131 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99718 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46946 * 60.00303 * 25 23 21 27 27 H 1.48498 * 109.47199 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47467 * 300.00509 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.70292 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.70392 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.70373 * 1 2 3 32 32 H 1.08000 * 122.44940 * 0.02562 * 3 2 1 33 33 H 1.08005 * 124.51936 * 180.17801 * 4 3 2 34 34 H 0.97004 * 119.99664 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46976 * 299.99952 * 12 10 9 36 36 H 1.08997 * 109.47336 * 59.99541 * 12 10 9 37 37 H 1.08996 * 109.47228 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47020 * 179.97438 * 15 13 10 39 39 H 1.09000 * 109.46950 * 299.99888 * 15 13 10 40 40 H 1.09000 * 109.47261 * 60.00044 * 15 13 10 41 41 H 1.00895 * 111.00174 * 31.03656 * 16 13 10 42 42 H 1.09001 * 109.46351 * 299.99417 * 17 16 13 43 43 H 1.08994 * 109.47291 * 59.99787 * 17 16 13 44 44 H 0.96997 * 119.99503 * 0.02562 * 20 18 17 45 45 H 0.96996 * 119.99731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7081 -0.0037 6 6 2.2583 -1.1414 -0.0059 7 6 1.7284 -2.5081 -0.0136 8 8 0.5257 -2.6945 -0.0146 9 7 2.5731 -3.5584 -0.0185 10 6 2.0435 -4.9243 -0.0267 11 1 1.1279 -4.9554 -0.6174 12 6 1.7403 -5.3623 1.4075 13 6 3.0788 -5.8689 -0.6404 14 1 3.2290 -5.6116 -1.6889 15 6 4.4034 -5.7327 0.1130 16 7 2.5985 -7.2535 -0.5401 17 6 3.2038 -8.0974 -1.5792 18 6 2.6889 -9.5072 -1.4443 19 8 1.8961 -9.7821 -0.5684 20 7 3.1094 -10.4627 -2.2969 21 6 2.6413 -11.7453 -2.1739 22 1 1.9354 -11.9902 -1.3940 23 6 3.0744 -12.7302 -3.0532 24 7 3.9330 -12.4322 -4.0024 25 14 2.4373 -14.4781 -2.8852 26 1 0.9603 -14.4836 -3.0396 27 1 3.0485 -15.3310 -3.9361 28 1 2.7969 -15.0096 -1.5460 29 1 -0.3633 -0.0053 1.0277 30 1 -0.3633 -0.8873 -0.5184 31 1 -0.3633 0.8927 -0.5092 32 1 1.8201 2.1334 0.0004 33 1 4.3206 1.7490 0.0084 34 1 3.5317 -3.4098 -0.0173 35 1 2.6559 -5.3312 1.9982 36 1 1.0029 -4.6893 1.8448 37 1 1.3459 -6.3784 1.4014 38 1 5.1409 -6.4061 -0.3240 39 1 4.7598 -4.7053 0.0384 40 1 4.2533 -5.9900 1.1615 41 1 1.5913 -7.2911 -0.5851 42 1 2.9416 -7.7069 -2.5625 43 1 4.2876 -8.0942 -1.4640 44 1 3.7436 -10.2428 -2.9970 45 1 4.2355 -13.1199 -4.6160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755224162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -41.819757 kcal Electronic energy + Delta-G solvation = -26342.489396 eV Core-core repulsion = 22486.519041 eV Total energy + Delta-G solvation = -3855.970355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.33322 -38.74720 -38.16467 -37.13766 -34.49522 -33.79236 -31.59367 -31.23086 -30.91455 -29.26923 -28.18996 -26.57068 -24.72212 -24.09377 -23.46387 -21.66114 -19.99452 -19.41287 -19.04384 -18.50422 -17.90073 -16.57323 -16.21656 -15.91145 -15.58824 -15.46379 -15.25374 -14.79210 -14.43335 -14.15244 -13.94314 -13.83104 -13.72403 -13.46621 -13.16454 -12.81169 -12.68801 -12.53351 -12.42366 -12.20446 -12.11439 -12.03765 -11.81111 -11.58510 -11.42920 -11.30120 -11.07587 -10.91259 -10.70582 -10.43771 -10.20959 -10.09346 -9.49554 -9.41447 -9.11542 -8.83866 -8.46613 -8.12011 -7.95843 -6.41261 -3.82049 0.13498 1.08568 1.47323 2.00260 2.83891 2.93951 3.20804 3.26407 3.31001 3.91050 4.09719 4.32216 4.43726 4.47722 4.63592 4.82333 4.85123 4.94024 5.13679 5.14081 5.21885 5.25620 5.41235 5.44771 5.54806 5.55821 5.58151 5.65064 5.73842 5.78283 5.91117 5.93470 5.95349 5.99632 6.12416 6.20251 6.27629 6.35960 6.43490 7.13331 7.23782 7.55575 7.59798 7.93758 8.06414 8.61562 9.18216 9.54530 10.05957 10.76388 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.001843 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.134709 B =15191.523738 C =15572.049581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.020 4.020 3 C -0.149 4.149 4 C -0.226 4.226 5 S 0.193 5.807 6 C -0.274 4.274 7 C 0.592 3.408 8 O -0.524 6.524 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.090 0.910 12 C -0.158 4.158 13 C 0.076 3.924 14 H 0.048 0.952 15 C -0.145 4.145 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.396 0.604 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 28.402 5.938 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.035 4.035 3 C -0.180 4.180 4 C -0.363 4.363 5 S 0.461 5.539 6 C -0.394 4.394 7 C 0.378 3.622 8 O -0.402 6.402 9 N -0.372 5.372 10 C 0.039 3.961 11 H 0.108 0.892 12 C -0.216 4.216 13 C -0.035 4.035 14 H 0.066 0.934 15 C -0.203 4.203 16 N -0.290 5.290 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.210 26.916 6.842 27.958 hybrid contribution -0.887 0.680 -1.275 1.696 sum 2.323 27.597 5.567 28.249 Atomic orbital electron populations 1.20758 0.88567 1.04005 1.03177 1.19567 0.97990 0.90370 0.95575 1.19961 0.92580 0.99762 1.05714 1.25263 1.00709 1.01735 1.08621 1.83008 1.04155 0.98477 1.68289 1.24442 0.97205 0.97441 1.20346 1.16897 0.86221 0.82779 0.76289 1.90793 1.14254 1.85177 1.49973 1.46056 1.09626 1.05953 1.75613 1.21119 0.96992 0.79453 0.98572 0.89232 1.22130 1.01883 1.02673 0.94884 1.21722 0.94985 0.88787 0.98012 0.93408 1.21893 0.96276 1.00015 1.02091 1.60186 1.13397 1.05792 1.49590 1.21736 1.00355 0.93338 0.92785 1.19778 0.86280 0.86246 0.85069 1.90528 1.37728 1.82209 1.36161 1.41851 1.40844 1.08373 1.28944 1.19655 1.24368 0.84016 1.14857 0.87951 1.25265 0.96664 1.00396 0.95644 1.69604 1.31865 1.35102 1.17787 0.85912 0.78980 0.81364 0.77926 1.19912 1.20999 1.19886 0.90583 0.88737 0.91637 0.83707 0.81321 0.76769 0.92122 0.92741 0.89828 0.91877 0.93423 0.91042 0.82778 0.93792 0.89518 0.77477 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.55 36.01 0.34 -0.60 16 2 C -0.02 -0.18 5.90 -105.47 -0.62 -0.81 16 3 C -0.15 -1.06 9.97 -41.41 -0.41 -1.47 16 4 C -0.23 -1.40 10.92 29.18 0.32 -1.08 16 5 S 0.19 1.33 22.16 -107.50 -2.38 -1.05 16 6 C -0.27 -2.73 6.45 -36.80 -0.24 -2.97 16 7 C 0.59 7.06 7.74 -12.89 -0.10 6.96 16 8 O -0.52 -7.73 13.91 5.19 0.07 -7.66 16 9 N -0.72 -7.42 4.98 -55.15 -0.27 -7.69 16 10 C 0.14 1.66 2.30 -67.93 -0.16 1.51 16 11 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 12 C -0.16 -1.89 9.02 37.16 0.34 -1.56 16 13 C 0.08 0.90 2.66 -67.72 -0.18 0.72 16 14 H 0.05 0.56 7.80 -51.93 -0.40 0.15 16 15 C -0.14 -1.50 8.93 37.16 0.33 -1.17 16 16 N -0.66 -10.10 5.14 -108.00 -0.55 -10.66 16 17 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 18 C 0.44 10.30 7.82 -10.98 -0.09 10.22 16 19 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 20 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.04 6.01 -51.93 -0.31 0.73 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.40 3.30 5.69 -40.82 -0.23 3.07 16 35 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.11 7.17 -51.93 -0.37 0.74 16 38 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.05 0.37 6.29 -51.93 -0.33 0.05 16 40 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 41 H 0.35 5.72 7.62 -39.29 -0.30 5.42 16 42 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 43 H 0.09 1.37 7.43 -51.93 -0.39 0.98 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -32.50 381.72 -8.55 -41.06 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.16 Total: 15.25 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.74 Total: 2.59 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.16 Total: -56.43 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.38 Total: -1.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.50 -8.55 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755224162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.762 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds