Wall clock time and date at job start Sat Apr 11 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29526 * 121.53096 * 2 1 4 4 S 1.69479 * 107.84103 * 180.21654 * 3 2 1 5 5 C 1.72010 * 96.02953 * 359.74694 * 4 3 2 6 6 C 1.50706 * 127.31709 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36633 * 359.97438 * 5 4 3 8 8 C 1.47340 * 123.08750 * 179.97438 * 7 5 4 9 9 O 1.21619 * 120.00040 * 90.00119 * 8 7 5 10 10 N 1.34779 * 119.99922 * 270.00175 * 8 7 5 11 11 C 1.47146 * 120.98129 * 359.97438 * 10 8 7 12 12 C 1.53300 * 108.38527 * 129.49024 * 11 10 8 13 13 O 1.42960 * 109.22017 * 52.30202 * 12 11 10 14 14 C 1.42962 * 114.16544 * 297.42005 * 13 12 11 15 15 H 1.08997 * 109.55497 * 302.63085 * 14 13 12 16 16 C 1.53005 * 109.51097 * 182.51023 * 14 13 12 17 17 H 1.08999 * 109.47285 * 180.25578 * 16 14 13 18 18 C 1.52995 * 109.47474 * 60.24912 * 16 14 13 19 19 N 1.46504 * 109.46654 * 300.25122 * 16 14 13 20 20 C 1.36943 * 119.99781 * 205.00227 * 19 16 14 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99622 * 180.27904 * 20 19 16 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.47152 * 120.98094 * 180.02562 * 10 8 7 29 29 H 1.09000 * 109.47506 * 270.25115 * 1 2 3 30 30 H 1.09001 * 109.47091 * 30.24929 * 1 2 3 31 31 H 1.09005 * 109.47110 * 150.24665 * 1 2 3 32 32 H 1.09004 * 109.46282 * 270.02014 * 6 5 4 33 33 H 1.08997 * 109.47408 * 30.01783 * 6 5 4 34 34 H 1.09002 * 109.47135 * 150.02960 * 6 5 4 35 35 H 1.09009 * 109.68345 * 249.21423 * 11 10 8 36 36 H 1.09003 * 109.68433 * 9.72783 * 11 10 8 37 37 H 1.08999 * 109.51280 * 172.22517 * 12 11 10 38 38 H 1.08996 * 109.50628 * 292.37951 * 12 11 10 39 39 H 1.09001 * 109.47135 * 179.97438 * 18 16 14 40 40 H 1.08999 * 109.47409 * 300.00591 * 18 16 14 41 41 H 1.09007 * 109.46569 * 60.00163 * 18 16 14 42 42 H 0.97000 * 120.00410 * 25.00552 * 19 16 14 43 43 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.68474 * 110.79081 * 28 10 8 45 45 H 1.09003 * 109.68283 * 350.22792 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7029 -0.0061 5 6 3.6017 -1.0018 -0.0012 6 6 4.6678 -2.0670 -0.0038 7 6 2.2352 -1.1867 0.0057 8 6 1.6036 -2.5179 0.0111 9 8 1.3480 -3.0654 1.0666 10 7 1.3093 -3.1289 -1.1536 11 6 1.6086 -2.4860 -2.4430 12 6 2.3728 -3.4875 -3.3166 13 8 1.6427 -4.7153 -3.3737 14 6 1.4879 -5.3634 -2.1089 15 1 2.4691 -5.5526 -1.6734 16 6 0.7499 -6.6899 -2.3013 17 1 0.6283 -7.1814 -1.3361 18 6 1.5585 -7.5926 -3.2351 19 7 -0.5676 -6.4347 -2.8889 20 6 -1.5881 -7.3273 -2.6953 21 1 -1.4213 -8.2194 -2.1099 22 6 -2.8348 -7.0884 -3.2569 23 7 -3.0378 -6.0015 -3.9707 24 14 -4.2246 -8.3097 -2.9993 25 1 -4.9821 -7.9466 -1.7747 26 1 -5.1350 -8.2781 -4.1721 27 1 -3.6616 -9.6753 -2.8464 28 6 0.6780 -4.4579 -1.1734 29 1 -0.3634 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5100 32 1 4.9201 -2.3258 -1.0322 33 1 5.5561 -1.6933 0.5053 34 1 4.2980 -2.9525 0.5133 35 1 0.6789 -2.2028 -2.9366 36 1 2.2213 -1.5997 -2.2779 37 1 2.4835 -3.0827 -4.3226 38 1 3.3574 -3.6690 -2.8859 39 1 1.0330 -8.5377 -3.3718 40 1 1.6802 -7.1011 -4.2004 41 1 2.5389 -7.7824 -2.7979 42 1 -0.7173 -5.6337 -3.4150 43 1 -3.9092 -5.8344 -4.3628 44 1 -0.3452 -4.3730 -1.5395 45 1 0.6750 -4.8780 -0.1676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755447307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:25 Heat of formation + Delta-G solvation = -23.617415 kcal Electronic energy + Delta-G solvation = -28457.088448 eV Core-core repulsion = 24601.907405 eV Total energy + Delta-G solvation = -3855.181043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81786 -39.18599 -37.90125 -35.51722 -34.53611 -33.60735 -32.31514 -30.37781 -29.93961 -28.75230 -28.41381 -27.35269 -24.39183 -23.52317 -23.40174 -22.10742 -20.69649 -19.72846 -18.72657 -18.39249 -17.33752 -17.06193 -16.44250 -15.88926 -15.42864 -15.04042 -14.76916 -14.65287 -14.60959 -14.26799 -13.84899 -13.74429 -13.65186 -13.37530 -13.17723 -12.90262 -12.84478 -12.48744 -12.45636 -12.41266 -11.96074 -11.88901 -11.47805 -11.40446 -11.21596 -10.98546 -10.85670 -10.78760 -10.51140 -10.33730 -10.11968 -9.91076 -9.85323 -9.62492 -9.58662 -8.93061 -8.91561 -8.45255 -6.93431 -5.74410 -3.02924 0.24278 1.03876 1.44502 1.87274 2.44440 2.92889 3.44955 3.50608 3.51695 3.93540 4.02222 4.35080 4.56835 4.60416 4.77181 4.87577 4.96142 5.02493 5.04452 5.07679 5.19011 5.26307 5.34186 5.35260 5.41165 5.45792 5.54146 5.60493 5.66012 5.75972 5.80944 5.84267 5.97237 6.18828 6.29072 6.30846 6.38800 6.50135 6.64226 6.76373 7.11704 7.27761 7.43079 7.72089 8.01904 8.43826 9.56345 10.12792 10.50061 11.47746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003150 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.157024 B = 8885.395599 C = 9613.434343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.156 3.844 3 N -0.465 5.465 4 S 0.273 5.727 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.207 4.207 8 C 0.589 3.411 9 O -0.527 6.527 10 N -0.600 5.600 11 C 0.073 3.927 12 C 0.050 3.950 13 O -0.356 6.356 14 C 0.079 3.921 15 H 0.055 0.945 16 C 0.182 3.818 17 H 0.060 0.940 18 C -0.160 4.160 19 N -0.717 5.717 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.085 3.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.390 0.610 43 H 0.254 0.746 44 H 0.101 0.899 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.144 12.526 5.227 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 N -0.286 5.286 4 S 0.429 5.571 5 C -0.268 4.268 6 C -0.145 4.145 7 C -0.227 4.227 8 C 0.374 3.626 9 O -0.403 6.403 10 N -0.333 5.333 11 C -0.050 4.050 12 C -0.028 4.028 13 O -0.274 6.274 14 C 0.019 3.981 15 H 0.073 0.927 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.221 4.221 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.037 4.037 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.676 14.107 5.661 23.313 hybrid contribution -1.557 -1.784 0.094 2.370 sum 16.119 12.324 5.755 21.091 Atomic orbital electron populations 1.20686 0.85833 1.04462 1.04366 1.21312 0.99081 0.86795 0.95000 1.76413 1.00080 1.25836 1.26232 1.83970 1.10695 0.95133 1.67266 1.26051 0.97124 1.02671 1.00997 1.20420 0.94824 0.95388 1.03866 1.20186 0.92560 0.95918 1.14062 1.17364 0.77951 0.83607 0.83724 1.90825 1.53391 1.65600 1.30523 1.48189 1.60280 1.19599 1.05250 1.22461 1.01785 0.96408 0.84361 1.22866 0.93835 0.85715 1.00394 1.88125 1.75056 1.34750 1.29497 1.22935 0.97523 0.93711 0.83905 0.92722 1.20258 0.86642 0.89646 0.96282 0.92204 1.22353 0.97873 1.00795 1.01038 1.42385 1.04916 1.26753 1.61907 1.19238 0.89673 1.01506 1.26654 0.91225 1.24705 0.97730 0.97817 1.00448 1.69665 1.22856 1.26539 1.38726 0.86239 0.82525 0.80647 0.77058 1.21780 1.21880 1.20828 1.22538 0.98569 0.80468 1.02075 0.89234 0.89552 0.89802 0.89273 0.89802 0.89668 0.89728 0.89902 0.87873 0.93370 0.92731 0.92549 0.94895 0.77508 0.93600 0.88088 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.96 36.00 0.36 -0.64 16 2 C 0.16 1.89 6.75 -83.20 -0.56 1.33 16 3 N -0.46 -5.61 11.97 32.50 0.39 -5.22 16 4 S 0.27 2.58 23.69 -107.50 -2.55 0.03 16 5 C -0.14 -1.38 6.51 -34.43 -0.22 -1.61 16 6 C -0.09 -0.65 10.19 36.01 0.37 -0.28 16 7 C -0.21 -2.55 3.68 -105.95 -0.39 -2.94 16 8 C 0.59 8.64 5.66 -12.56 -0.07 8.57 16 9 O -0.53 -9.57 16.58 5.26 0.09 -9.48 16 10 N -0.60 -8.42 3.02 -173.55 -0.52 -8.95 16 11 C 0.07 0.85 6.54 -3.53 -0.02 0.83 16 12 C 0.05 0.58 6.99 37.31 0.26 0.84 16 13 O -0.36 -5.73 9.22 -35.23 -0.32 -6.05 16 14 C 0.08 1.26 2.53 -26.56 -0.07 1.20 16 15 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.18 3.49 2.73 -67.93 -0.19 3.30 16 17 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 18 C -0.16 -2.87 9.35 37.16 0.35 -2.52 16 19 N -0.72 -17.20 4.29 -53.42 -0.23 -17.43 16 20 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 24 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.08 1.41 5.87 -3.51 -0.02 1.39 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.97 7.39 -51.93 -0.38 0.58 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 35 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.08 0.82 6.30 -51.93 -0.33 0.49 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.39 10.11 7.20 -40.82 -0.29 9.82 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.10 1.98 7.27 -51.93 -0.38 1.60 16 45 H 0.10 1.69 7.08 -51.93 -0.37 1.33 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -32.22 381.31 -8.91 -41.13 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.75 Total: 7.38 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.45 Total: 2.48 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.36 Total: -58.34 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.24 Total: -15.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.55 Total: 0.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.22 -8.91 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.512 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds